Search Results (6,080)

The skin microbiome plays a central role in maintaining cutaneous homeostasis, and its disruption has been implicated in a wide range of inflammatory and degenerative skin disorders. This review critically evaluates the current evidence on topical probiotics in dermatology, integrating microbiological mechanisms, formulation strategies, and translational and regulatory challenges within a single framework—an angle that remains insufficiently addressed in previous reviews. A targeted search of PubMed and ScienceDirect (2009–2025) was conducted to identify relevant original studies. The results suggest that topical probiotics may promote skin health through three broad, interconnected axes: (i) modulation of host responses (e.g., inflammation, immune signaling, and oxidative stress); (ii) microbial ecology and pathogen control (e.g., competition, acidification, and antimicrobial metabolite production); and (iii) support of barrier function and tissue repair (e.g., lipid metabolism, re-epithelialization, and extracellular matrix remodeling). Efficacy appears to depend strongly on strain specificity, formulation design, and microbial viability during storage and application. In addition to conventional dosage forms, advanced platforms—hydrogels, microgels, microparticles, and microneedle-based systems—have been investigated to improve stability and local delivery. Promising preclinical and clinical results have been reported for acne, wound healing, skin barrier repair, and anti-aging applications. Nevertheless, major translational challenges remain, including limited standardization, instability of live microorganisms, insufficiently representative experimental models, and regulatory uncertainty. Overall, topical probiotics represent a promising microbiome-based strategy in dermatology, but robust clinical validation and formulation optimization are still needed to support broader clinical implementation. Full article

Coral-associated microbial communities play a critical role in the health and resilience of reef ecosystems; however, the relative importance of host identity and environmental factors in shaping these communities remains unclear, particularly in understudied regions such as the Gulf of California. In this study, we characterized the taxonomic composition, diversity patterns, persistent taxa (core bacteriome), and predicted functional potential of bacterial communities associated with three coral genera (Pocillopora, Porites, and Pavona) and surrounding seawater using 16S rRNA gene amplicon sequencing and PICRUSt2-based functional inference. Bacterial community structure differed significantly among coral hosts (PERMANOVA, p < 0.01), whereas geographic location and measured physicochemical parameters had no detectable effect. Coral-associated bacterial communities exhibited lower alpha diversity than seawater and formed distinct host-specific clusters in beta-diversity analyses. Core bacteriome analysis revealed a combination of conserved and host-specific taxa, with Acinetobacter consistently present across hosts, while genera such as Pseudovibrio and Ruegeria showed host-specific associations. Differential abundance analyses further confirmed distinct bacterial signatures among coral genera. Predicted functional profiles were dominated by central metabolic pathways and exhibited significant differences among hosts, although overall functional composition remained relatively conserved. Stratified analyses indicated that similar metabolic pathways were supported by different taxonomic assemblages, suggesting functional redundancy. Overall, our results demonstrate that host identity is the primary driver of both taxonomic composition and predicted functional potential in coral-associated bacterial communities in the Gulf of California, highlighting the coexistence of stability and host-specific differentiation within the coral holobiont. Full article

Fungal communities associated with the phyllosphere can influence plant health, stress responses, and disease dynamics in managed crop systems. However, limited information is available on fungal microbiome structure across phyllosphere compartments of Eucalyptus cinerea cultivated for cut foliage production. In this study, fungal communities (including epiphytic and endophytic fungi) associated with leaf, stem, and bark tissues of intensively managed E. cinerea grown in Ireland were characterised using ITS amplicon sequencing. Samples were collected from five trees, with tissues pooled by compartment to generate 15 biological samples. Following quality control and denoising, 405 fungal amplicon sequence variants (ASVs) were retained for analysis. Observed richness, Shannon and Simpson indices, and Faith’s phylogenetic diversity differed among compartments, with bark exhibiting higher values than leaf and stem tissues (p < 0.05). PERMANOVA analysis indicated that both compartment (R² = 0.239, p = 0.002) and tree identity (R² = 0.451, p = 0.002) significantly influenced fungal community composition. Bark communities were dominated by Diaporthe (52.9%), Peniophora (12.8%), and Talaromyces (10.4%), whereas leaf and stem communities were characterised primarily by Vishniacozyma and Sporobolomyces. Differential abundance analysis identified 26 and 23 differentially abundant ASVs between bark and leaf, and bark and stem tissues, respectively, whereas no significant differences were detected between leaf and stem communities. Weighted UniFrac analyses further revealed separation of bark-associated communities from photosynthetic tissues. These findings demonstrate compartment-associated variation in fungal community structure within the phyllosphere of managed E. cinerea and highlight the importance of considering both host-level and tissue-level effects in plant microbiome studies. This study provides a baseline assessment of fungal assemblages associated with commercially managed Eucalyptus under Irish growing conditions and supports future investigations into the functional significance of these microbial communities for plant health and resilience. Full article

Innate immunity predictors of HIV-1 risk and pathogenesis vary with reproductive hormones, pregnancy, and lactation, yet the underlying mechanisms remain unclear. We hypothesized that pregnancy-associated physiological adaptations alter systemic microRNA (miRNA) expression, thereby regulating immunity, pathogenesis and susceptibility to infection. We analyzed 174 serum samples from 88 participants in a longitudinal cohort from Uganda and Zimbabwe across pre-pregnancy (PP), pregnancy (P), and postpartum breastfeeding (BF). Cell-free peripheral blood miRNAs (n = 2083) were profiled using HTG EdgeSeq. Pregnancy-specific miRNAs were identified by intersecting differentially expressed (DE) miRNAs from P vs. PP and P vs. BF comparisons. miRNA targets and pathways were analyzed using miRWalk, Cytoscape/ClueGO, and cytoHubba. Pregnancy was associated with DE miRNAs (29 upregulated and 131 downregulated) targeting 2733 validated genes. Enriched pathways (FDR < 0.05) included adaptive immune response, Hippo Signaling, Cellular Senescence, HSV-1 infection, and two cancer-related pathways. Pregnancy-enriched targets within each pathway overlapped with the HIV–host interactome by 37–88%. Network analysis identified 47 hub genes interacting with 18 HIV-1 proteins, with Tat and gp120 being most connected viral and HLA-A being the most connected host protein. These findings indicate that pregnancy-driven systemic miRNAs target the HIV–host interactome and specifically identify pregnancy-enriched central hub genes involved in cell cycle control, viral immune evasion and replication to be further investigated for their predictive value in HIV acquisition and pathogenesis in longitudinal cohorts and experimental settings. Full article

In this Perspective, we present a non-systematic narrative synthesis and propose a hypothesis-generating framework that links regional anesthesia, local anesthetic strategies, surgery-induced NETosis, and perioperative metastatic biology. Surgical tumor resection coincides with a biologically vulnerable perioperative period characterized by inflammatory activation, innate immune remodeling, and potential metastatic susceptibility. Preclinical evidence suggests that this interval may represent a transient metastatic window in which circulating tumor cells and host inflammatory responses overlap, potentially favoring metastatic implantation. Among the mechanisms implicated in this process, neutrophil extracellular traps (NETs) have been implicated in tumor-cell capture, endothelial interaction, immune evasion, and metastatic outgrowth. Experimental studies further suggest that surgery-induced NETosis may contribute to prometastatic signaling and tumor-cell metabolic adaptation during the postoperative period. Human evidence remains more limited and heterogeneous. Observational studies indicate that NET-related biology is active during oncologic surgery, with the presence of tissue NETs and circulating NET-associated biomarkers correlating with tumor stage, inflammatory context, or tumor burden in selected malignancies. Perioperative clinical studies also suggest that regional anesthesia and local anesthetic-based strategies, including intravenous lidocaine, may influence neutrophil activation and postoperative NET-associated biomarkers. However, robust evidence of clinical oncologic outcomes remains limited, and a clear distinction between surrogate perioperative endpoints and long-term clinical outcomes is still lacking. Within this context, we propose that regional anesthesia may influence pathways associated with perioperative tumor–host interactions not primarily through opioid sparing but through modulation of mechanisms related to surgery-induced NETosis during a short-lived biological window. The neutral results of large survival-based trials do not necessarily invalidate this hypothesis; rather, they underscore the limitations of conventional oncologic endpoints in capturing transient perioperative biological effects. This Perspective outlines a translational research agenda centered on biomarker-driven perioperative studies integrating NET-specific markers, circulating tumor cell dynamics, and temporally precise postoperative sampling. Full article

During the 2024 growing season, black carrot (Daucus carota subsp. sativus) plants showing symptoms consistent with phytoplasma infection, including leaf chlorosis, reduced leaf size, witches’ broom, excessive fibrous root formation, multiple lateral taproots, and floral phyllody, were observed in production fields in Hatay Province, Türkiye. To identify the associated phytoplasma, 23 symptomatic plants and two asymptomatic control plants were analysed using PCR-based molecular detection, sequencing, BLASTn comparison, and phylogenetic analyses of the 16S rRNA, secA, tuf, and imp gene regions. The SAP11 gene was also screened as an additional virulence-associated molecular marker, but no functional characterization was performed. All symptomatic samples yielded amplicons of the expected sizes for the targeted loci, whereas no amplification was obtained from asymptomatic controls. Sequence comparisons revealed >99% nucleotide identity with members of the peanut witches’ broom group, and multilocus phylogenetic analyses consistently placed the black carrot phytoplasma isolate within the 16SrII-D subgroup. To our knowledge, this study provides the first documented evidence of a 16SrII-D phytoplasma associated with black carrot in Türkiye. The finding is relevant for plant pathology and plant protection because it indicates the occurrence of a phytoplasma lineage with potential epidemiological importance in an economically important vegetable production area. These results provide a basis for future studies on disease distribution, insect vectors, alternative host plants, epidemiology, and management strategies in black carrot production systems. Full article

Anthrax is an endemic and undercharacterized zoonotic disease in the Middle East, including Jordan. Between 2018 and 2020, we conducted a comprehensive investigation of 13 confirmed anthrax outbreaks in Jordan, analyzing 822 samples from animal farm environments, including carcasses, asymptomatic livestock, and abiotic environmental surfaces. All samples were tested by qPCR targeting the chromosomal marker (ba177) and the plasmid marker pXO1 (pag). Among carcass samples, 75/195 (38.5%) were ba177-positive, of which 81% harbored the pXO1. Of specimens from live-animals and from environmental surfaces, 218/627 (35%) were positive by qPCR, likely reflecting environmental contamination during active outbreak periods. Serological analysis using anti-protective antigen (PA) ELISA revealed a high seroprevalence of 53% (75/141) among asymptomatic animals, indicating widespread sub-clinical exposure to B. anthracis antigens and previously undocumented endemicity. An integrated approach combining qPCR with ELISA demonstrated that 11% of seropositive animals with paired swab testing also yielded swab samples that were positive by qPCR, suggesting environment-to-host transition. Molecular strain typing using canonical SNP (canSNP) analysis identified the rare sublineage C.USA.A1055 within lineage C.Br.A1005 across two distinct outbreaks, suggesting the environmental persistence of this endemic lineage. Overall, our findings provide the first systematic molecular and serological surveillance baseline data for Jordan, demonstrating a complex genomic persistence and subclinical exposure landscape. This study suggests the need for enhanced surveillance strategies under the One Health framework to mitigate the risk of anthrax endemicity. Full article

Food systems are usually discussed in terms of nutrition, food safety, productivity, sustainability or emissions. Less attention is given to the microbial dimension of the farm-to-fork pathway and to the way food systems shape the dietary substrates, food matrices and microbial exposures that reach the gut. Soils, plants, foods, processing environments, animals and the human gut all host microbial communities that influence nutrient cycling, plant performance, food characteristics, metabolism, immune regulation and ecological resilience. This review examines how food systems may modulate gut microbiota and microbiome resilience within a One Health framework. Evidence from soil, crop and food microbiome studies suggests that local conditions and farming practices can leave detectable microbial signatures on plants and edible tissues. However, the soil–food–gut continuum should not be understood as a simple transfer route. Microorganisms and microbial products are repeatedly filtered by plant traits, farming systems, animal-production interfaces, harvesting, processing, storage, preparation and host physiology. The review also considers how this continuity may be weakened or redirected. Agricultural intensification, pollutants, post-harvest processing, antimicrobial use, ultra-processed foods, additive mixtures, low-fibre diets, early-life microbial disruption and reduced contact with environmental biodiversity may alter microbial communities at different points of the food system. Antimicrobial resistance is also discussed as a functional microbial trait that can circulate across human, animal, food and environmental interfaces. One Health approaches to food systems should therefore combine microbial risk control with microbial stewardship: protecting useful microbial diversity and function while preserving food safety. The aim is not to maximise microbial exposure, but to understand which microbial functions matter and how food systems can support gut microbiota resilience across environments, foods and hosts. Full article

Feline panleukopenia virus (FPV) causes severe enteric and systemic disease in cats, with particular importance in shelter environments where susceptible kittens, high population turnover, environmental contamination, and variable vaccination histories increase infection pressure. Recent virome and microbiome studies suggest that FPV-associated enteritis may occur within a broader context of viral co-detection and intestinal microbial disturbance, but direct FPV-specific bacteriome evidence remains limited. This review aims to synthesize current evidence on FPV-associated enteritis in shelter cats by integrating viral pathogenesis, diagnostic interpretation, enteric virome co-detection, gut dysbiosis, recovery dynamics, and intervention-related ecological effects. The literature was organized using an evidence-tier framework that distinguishes direct FPV/feline panleukopenia evidence from feline enteric microbiome proxy evidence and broader comparative or mechanistic microbiome studies. This approach was used to define the limits of inference and to separate evidence-supported conclusions from hypothesis-generating ecological models. Feline panleukopenia in shelter cats should be interpreted not only as an individual viral infection, but also as an ecological process shaped by host susceptibility, shelter exposure, diagnostic complexity, viral co-detection, and microbial community disturbance. Current evidence supports a cautious framework in which virome co-detection and dysbiosis-associated patterns are not treated as direct proof of causation. Future longitudinal, context-controlled, and multi-layer studies integrating validated FPV diagnostics, virome and bacteriome profiling, clinical metadata, treatment records, and functional endpoints are needed to clarify the biological and clinical significance of gut ecosystem disruption in feline panleukopenia. Full article

The Ordos Basin and the adjacent Shanxi region in northern China host multiple energy resources. However, the exhumation history of this region (especially the Cenozoic exhumation history) remains poorly constrained despite its importance for understanding basin evolution and multi-energy resource accumulation within the North China Craton (NCC). This study presents new apatite fission-track (AFT) data and thermal-history models from the eastern Ordos Basin and integrates them with previously published low-temperature thermochronological datasets to reconstruct the regional tectono-thermal evolution and evaluate its implications for mineral and hydrocarbon systems. The new AFT ages range from 39.5 to 24.8 Ma and are concentrated in the Late Eocene-Oligocene, recording two rapid cooling episodes at 39.5–32.7 Ma and 26.6–24.8 Ma. Together with regional thermochronological data, these results define five major tectono-thermal episodes since the Late Ordovician and reveal pronounced spatial variations in exhumation. This pattern indicates that Cenozoic deformation became increasingly localized along inherited basin-margin fault systems while the interior of the Ordos Basin remained comparatively stable. The reconstructed tectono-thermal history demonstrates that Late Jurassic-Early Cretaceous tectono-thermal reactivation coincided with peak hydrocarbon generation and accumulation, whereas Cenozoic uplift and fault reactivation primarily influenced hydrocarbon preservation and coalbed methane enrichment through differential exhumation and structural reorganization. These results refine the Cenozoic exhumation history of the eastern Ordos Basin and establish a regional tectono-thermal framework for understanding the coupled evolution of basin development and the accumulation and preservation of multi-energy resources. Full article

Petrophysical characterization of rocks is essential for the reliable interpretation of gravity and magnetic fields in ore districts where sedimentary, volcanogenic, and intrusive rocks occur in complex structural relationships. This study uses a database comprising 643 bulk-density determinations and 650 magnetic-susceptibility determinations obtained from drill-core and hand-specimen samples from the southeastern part of the Sarysu–Teniz uplift, Central Kazakhstan. In this study, these measurements are presented and interpreted in an aggregated form by the main lithostratigraphic and lithological groups; for each group, the number of determinations, weighted-average values, and diagnostic petrophysical characteristics are reported. The unit-level weighted-average density values range from 2.14 to 2.73 g/cm³, whereas mean magnetic-susceptibility values vary from 0 to 913 × 10⁻⁵ SI. Carbonate-dominated units, including limestones, marls, dolomites, and dolomitized limestones, are non-magnetic to practically non-magnetic, mostly at 0–14 × 10⁻⁵ SI. The highest values are recorded in andesite-basalts and quartz syenite porphyries, reaching 766–913 × 10⁻⁵ SI; granodiorites have an average value of approximately 452 × 10⁻⁵ SI. Density values partly overlap between sedimentary and intrusive rocks, especially within the interval range of 2.48–2.66 g/cm³, whereas magnetic susceptibility provides a more reliable criterion for distinguishing carbonate host rocks from magnetite-bearing magmatic assemblages. The combined density–magnetic susceptibility framework indicates that exploration targeting should prioritize bodies with elevated magnetic susceptibility or sharp magnetic gradients, especially where χ > 450 × 10⁻⁵ SI, provided that these features coincide with faults, lithological contacts, practically non-magnetic carbonate host rocks, and independent geochemical evidence or known mineral occurrences. Consequently, magnetic anomalies are interpreted as indirect structural–lithological indicators rather than as direct evidence of ore bodies. Full article

Anthropogenic CO₂ emissions have perturbed the global carbon cycle and increased atmospheric carbon concentrations to critical levels, making carbon capture and storage (CCS) a key strategy for mitigating climate warming. Natural carbon sequestration has operated continuously in marine environments throughout Earth history. Here, we investigate the growth mechanisms and carbon-sink significance of calcite concretions in the Mesoproterozoic Xiamaling Formation from the Zhaojiashan section and the Zhenzhuquan section in the North China Craton, using petrographic, elemental geochemical and C-O-Re-Os isotopic evidence. The presence of erosional surfaces and local truncation of host-rock laminae suggests that these concretions formed synsedimentarily or during early diagenesis near the sediment-water interface. The δ¹³C values (−5.05‰ to 1.54‰) of samples, together with δ¹⁸O-δ¹³C relationships, indicate a marine carbonate affinity and suggest that dissolved inorganic carbon was the dominant carbon source. In addition, the concretions display initial ¹⁸⁷Os/¹⁸⁸Os ratios as low as 0.136, close to the mantle Os end-member, implying a contribution from mantle-derived material during concretion formation. The middle rare earth element and yttrium (MREYs)-enriched patterns and slight positive Ce anomalies further indicate that concretion growth occurred mainly within the Mn- and Fe-reduction zones. We estimate that the calcite-concretion-bearing interval of the Xiamaling Formation sequestered 70.24 Gt C, equivalent to 257.56 Gt CO₂, serving as an archive of marine carbon burial in the Mesoproterozoic ocean. Microbially mediated carbonate precipitation may represent an effective carbon immobilization mechanism in marine sediments and has potential implications for the development of subseafloor carbon storage strategies, especially where biocatalysts and/or brine could accelerate seawater CO₂ mineral trapping to industrially relevant rates. Full article

Some groups of Diphyllobothriid tapeworms can cause foodborne or waterborne taeniasis, yet their systematics and evolution remain poorly understood. Based on mitochondrial genome data, this study reconstructed the phylogenetic trees of 11 cestode orders using maximum likelihood and Bayesian methods, clarified the valid species of Spirometra, traced the evolutionary history of four key ecological traits, and estimated the divergence times of major groups. Phylogenetic analyses supported Diphyllobothriidea and Bothriocephalidea as distinct clades, with Diphyllobothriidea forming a sister group to Haplobothriidea. In addition, three novel types of mitochondrial gene arrangements were identified in tapeworms, and variations in these arrangement types appear to correspond to changes in proglottid morphology. Species validation has shown that the available Spirometra mitogenomes represent only four valid species. Phylogenetic analysis identified two genetic lineages within S. mansoni, and a comparison of their representative sequences showed that the differences mainly lie in 12 PCGs, 7 tRNAs, 2 rRNAs, and 2 mNCRs. Ancestral character reconstruction suggested that tapeworms likely originated from freshwater fish hosts, with gradual adaptation to terrestrial hosts representing the main pathway of diversification, whereas transitions to marine environments were independent evolutionary events occurring in only a few groups. Molecular clock analyses indicated that tapeworm diversification began in the mid-to-late Oligocene, with episodic species radiations in different groups closely linked to host diversification and climatic changes. Notably, most groups within the family Diphyllobothriidae radiated during the Pleistocene, whereas Spirometra radiated during the Pliocene, coinciding with the origin of human-specialized cestodes. This study clarifies the phylogenetic position of diphyllobothriid tapeworms, infers the evolutionary patterns of ancestral traits across different tapeworm groups, and provides a theoretical basis for elucidating the origin and species diversity of tapeworms, as well as for assessing the transmission risk of pathogenic species. Full article

We report the study of Cur@HKUST-1 composites, obtained through one-pot infiltration of HKUST-1 with curcumin (Cur) as a guest-sensitizing molecule. Cur features a HOMO energy above the valence band (VB) of HKUST-1, enabling modulation of the electronic structure of the host framework by introducing additional energy states within the bandgap. Structural characterization, including X-ray diffraction (XRD), Fourier-transform infrared spectroscopy (FTIR), and thermogravimetric analysis (TGA), confirmed successful guest incorporation and preservation of HKUST-1 crystallinity. An initial Cur amount of 50% (relative to the BTC linker) was added to the synthetic mixture, and differential UV-vis analysis has shown an infiltration efficiency of 28.0%, corresponding to an infiltration degree of 14% in the Cur@HKUST-1 composite, highlighting a challenging loading process, primarily due to the size and conformations of the Cur structure. Textural analysis revealed a reduction in surface area and pore volume, consistent with a high degree of guest infiltration. Optical properties evaluated by diffuse reflectance UV-vis spectroscopy revealed new absorption bands and a notable decrease of 1.83 eV in the bandgap energy from 3.68 eV (HKUST-1) to 1.85 eV (Cur@HKUST-1) due to guest molecule infiltration. Density functional theory (DFT) calculations supported the experimental findings, showing that guest HOMOs promoted the formation of a new valence band (VB), while the original VB remains lower in energy. Density-of-states analysis confirmed that the new VB originates from 2p orbitals belonging to the guest, while the conduction band remains predominantly Cu-based from the HKUST-1 framework. Photoelectrochemical characterization revealed that the guest-modified material exhibits an enhanced photocurrent response compared to HKUST-1. Cur@HKUST-1 displayed higher stability and stronger photocurrent density, attributed to its narrower bandgap and increased charge carrier density. These results demonstrate the potential of rational guest selection to engineer band structure and improve the light-harvesting performance of MOFs in solar-driven applications. Full article

The Songpan-Ganzi and Eastern Kunlun region on the northern margin of the Tibetan Plateau is a key area for the evolution of the Paleo-Tethys tectonic domain and hosts abundant gold, lithium, and polymetallic mineral resources. To reveal the deep structure of this region and its metallogenic background, this study constructed a lithospheric electrical structure model based on magnetotelluric (MT) data along a profile traversing tectonic units such as the Qiangtang, Songpan-Ganzi, and Eastern Kunlun blocks. Data processing, dimensionality analysis, and two-dimensional inversion were performed. The results show that a large-scale, funnel-shaped conductor, originating from the upper mantle and penetrating the middle-lower crust, exists beneath the Songpan-Ganzi and Qiangtang terranes, indicating a major channel for deep-seated thermal material upwelling. Driven by Cenozoic tectonic reactivation, the thermal materials ascended along pre-existing lithospheric weak zones formed during the closure of the Paleo-Tethys Ocean. It spread extensively within the upper-middle crust of the Songpan-Ganzi terrane and migrated to the Eastern Kunlun orogenic belt via complex fault systems, ultimately forming low-resistivity bodies that closely coincide with the locations of major shallow ore-controlling faults. This electrical model suggests the presence of a “thermal material channel” system extending from the mantle to the shallow crust. The study suggests that the migration pathways of ore-forming fluids, represented by gold deposits in the Eastern Kunlun metallogenic belt, are highly correlated with the fault-magma channel system constituted by intra-crustal conductors. In contrast, the lithium-rich granitic magmatism associated with lithium mineralization within the Songpan-Ganzi terrane may be related to the deep thermal background reflected by the large-scale conductor in the upper mantle. From the perspective of electrical structure, this study suggests that mineralization in this region may be closely linked to deep crust–mantle processes. The reactivation of pre-existing tectonic-magmatic channels by Cenozoic thermal material is key to controlling the distribution pattern of dominant shallow mineral resources. The research results provide important geophysical constraints for a deeper understanding of the tectonic–magmatic–mineralization coupling mechanism on the northern margin of the Tibetan Plateau. Full article