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17 pages, 2006 KB  
Article
Effects of Host Plant on the Bacterial Community of the Leafhopper Scaphoideus titanus
by Andrea Arpellino, Aya M. A. Elsayed, Elena Gonella and Alberto Alma
Insects 2025, 16(11), 1144; https://doi.org/10.3390/insects16111144 - 8 Nov 2025
Viewed by 444
Abstract
The Nearctic leafhopper Scaphoideus titanus is the primary vector of Flavescence Dorée, a severe grapevine disease in Europe. This insect can complete its life cycle on both cultivated Vitis vinifera and American Vitis species, including rootstock-derived plants that have gone wild. While the [...] Read more.
The Nearctic leafhopper Scaphoideus titanus is the primary vector of Flavescence Dorée, a severe grapevine disease in Europe. This insect can complete its life cycle on both cultivated Vitis vinifera and American Vitis species, including rootstock-derived plants that have gone wild. While the movement of S. titanus between wild and cultivated vines is well documented, its biological implications remain unclear, particularly regarding the role of the insect-associated microbiome. In this study, we investigated how rearing S. titanus nymphs on different host plants, including American Vitis and several V. vinifera cultivars, affects its bacterial community. 16S rRNA metabarcoding revealed that the bacterial microbiome was dominated by two obligate symbionts, namely ‘Candidatus Karelsulcia’ and ‘Candidatus Cardinium’, with moderate but significant differences in microbial diversity among host plants and developmental stages. When these dominant symbionts were excluded, variability in the remaining bacterial community increased, indicating a modulation of minor taxa according to the plant offered. These findings suggest that host plant species influence the microbiome structure, potentially affecting the insect performance and the microbial exchange between wild and cultivated vines in the field, contributing to disease dynamics. Full article
(This article belongs to the Special Issue Biology, Ecology and Management of Sap-Sucking Pests)
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13 pages, 10246 KB  
Article
A Model of the Current Geographic Distribution and Predictions of Future Range Shifts of Lentinula edodes in China Under Multiple Climate Change Scenarios
by Wei-Jun Li, Rui-Heng Yang, Ting Guo, Sheng-Jin Wu, Yu Li and Da-Peng Bao
J. Fungi 2025, 11(10), 730; https://doi.org/10.3390/jof11100730 - 10 Oct 2025
Viewed by 828
Abstract
Due to its ecological functions, huge economic benefits, and excellent nutritional and physiological activities, Lentinula edodes is a very popular edible fungus in Asia, especially in China. Changes in the distribution and population of wild L. edodes play an important role in conservation, [...] Read more.
Due to its ecological functions, huge economic benefits, and excellent nutritional and physiological activities, Lentinula edodes is a very popular edible fungus in Asia, especially in China. Changes in the distribution and population of wild L. edodes play an important role in conservation, variety improvements, and breeding. This investigation detected wild L. edodes in 28 provinces and municipalities in China, encompassing approximately 300 regions and natural reserves. MaxEnt analysis of 53 effective distribution locations indicated that host plants, Bio19 (precipitation in the coldest quarter), Bio10 (mean temperature of the warmest quarter), and Bio17 (precipitation in the driest quarter) made the most critical contributions to this model. The areas of suitable and highly suitable habitats were 55.386 × 104 km2 and 88.493 × 104 km2, respectively. Under four climate change scenarios, the L. edodes distribution was predicted to decrease and the suitable habitat area shifted to the north and west of China. The decrease in highly suitable habitat area ranged from 21.155% in the 2070s under the ssp1-2.6 scenario to 90.522% in the 2050s under the ssp3-7.5 scenario. This sharp reduction in habitat areas suggests that we should take measures to prevent the deterioration of the environment and climate and thus to ensure the survival of L. edodes. Full article
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14 pages, 9301 KB  
Article
Insights into Cold-Season Adaptation of Mongolian Wild Asses Revealed by Gut Microbiome Metagenomics
by Jianeng Wang, Haifeng Gu, Hongmei Gao, Tongzuo Zhang, Feng Jiang, Pengfei Song, Yan Liu, Qing Fan, Youjie Xu and Ruidong Zhang
Microorganisms 2025, 13(10), 2304; https://doi.org/10.3390/microorganisms13102304 - 4 Oct 2025
Viewed by 622
Abstract
The Mongolian wild ass (Equus hemionus hemionus) is a flagship species of the desert-steppe ecosystem in Asia, and understanding its strategies for coping with cold environments is vital for both revealing its survival mechanisms and informing conservation efforts. In this study, [...] Read more.
The Mongolian wild ass (Equus hemionus hemionus) is a flagship species of the desert-steppe ecosystem in Asia, and understanding its strategies for coping with cold environments is vital for both revealing its survival mechanisms and informing conservation efforts. In this study, we employed metagenomic sequencing to characterize the composition and functional potential of the gut microbiota, and applied DNA metabarcoding of the chloroplast trnL (UAA) g–h fragment to analyze dietary composition, aiming to reveal seasonal variations and the interplay between dietary plant composition and gut microbial communities. In the cold season, Bacteroidota and Euryarchaeota were significantly enriched, suggesting enhanced fiber degradation and energy extraction from low-quality forage. Moreover, genera such as Bacteroides and Alistipes were also significantly enriched and associated with short-chain fatty acid (SCFA) metabolism, bile acid tolerance, and immune modulation. In the cold season, higher Simpson index values and tighter principal coordinates analysis (PCoA) clustering indicated a more diverse and stable microbiota under harsh environmental conditions, which may represent an important microecological strategy for the host to cope with extreme environments. Functional predictions based on the Kyoto Encyclopedia of Genes and Genomes (KEGG) further indicated upregulation of metabolic and signaling pathways, including ABC transporters, two-component systems, and quorum sensing, suggesting multi-level microbial responses to low temperatures and nutritional stress. trnL-based plant composition analysis indicated seasonal shifts, with Tamaricaceae detected more in the warm season and Poaceae, Chenopodiaceae, and Amaryllidaceae detected more in the cold season. Correlation analyses revealed that dominant microbial phyla were associated with the degradation of fiber, polysaccharides, and plant secondary metabolites, which may help maintain host energy and metabolic homeostasis. Despite the limited sample size and cross-sectional design, our findings highlight that gut microbial composition and structure may be important for host adaptation to cold environments and may also serve as a useful reference for future studies on the adaptive mechanisms and conservation strategies of endangered herbivores, including the Mongolian wild ass. Full article
(This article belongs to the Section Gut Microbiota)
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34 pages, 28285 KB  
Article
Tachinid Flies (Diptera), Caterpillar Hosts (Lepidoptera) and Their Food Plants, Reared in Área de Conservación Guanacaste (ACG), Northwestern Costa Rica: Documenting Community Structure with the Aid of DNA Barcodes
by Donald L. J. Quicke, Alan J. Fleming, D. Monty Wood, Norman E. Woodley, Ramya Manjunath, Suresh Naik, M. Alex Smith, Michael J. Sharkey, Winnie Hallwachs, Daniel H. Janzen, José Fernández-Triana, James B. Whitfield, Paul D. N. Hebert and Buntika A. Butcher
Diversity 2025, 17(9), 658; https://doi.org/10.3390/d17090658 - 20 Sep 2025
Viewed by 1361
Abstract
We describe the trophic relationships of tachinid parasitoid flies that attack exophagous, leaf-eating Lepidoptera caterpillars in Área de Conservación Guanacaste (ACG), northwestern Costa Rica over approximately forty years beginning in 1984. The dataset contains more than 34,000 individual tachinid rearings from individual wild-caught [...] Read more.
We describe the trophic relationships of tachinid parasitoid flies that attack exophagous, leaf-eating Lepidoptera caterpillars in Área de Conservación Guanacaste (ACG), northwestern Costa Rica over approximately forty years beginning in 1984. The dataset contains more than 34,000 individual tachinid rearings from individual wild-caught caterpillars. Identification of parasitoids and caterpillars up until 2004 was based entirely on morphology. From 2004 onwards most reared specimens were DNA-barcoded and some retroactive barcoding was also carried out with varying degrees of success. Generally, for older specimens, generating good quality-barcodes requires more expensive protocols. Barcoding of reared specimens led to the recognition that many morpho-species were made up of multiple species of flies but those reared from an individual caterpillar were 99.95% a single species. Consequently, estimates of diet breadth of caterpillars and tachinids changed considerably after 2003. The data analysed here were pruned to include only rearings with complete host and food plant data and excluded potentially duplicated rearings and ones whose identification could not be confidently assigned. The cleaned dataset includes 13,735 independent rearings. Chao1 estimates of numbers of tachinid, caterpillar and food plant species suggest that species sampling is 86, 70 and 91 percent complete, respectively. However, this was not the case for bi- and tritrophic interactions which increased linearly with effort. We show that while the tachinids of ACG are more host-specialised than was expected prior to the combined efforts of rearing and barcoding, they have broader host ranges and higher host Shannon diversity indices than either Braconidae or Ichneumonidae. This may be attributable to the effects of the induced host-derived sac enclosing the larvae and their posterior spiracles. Full article
(This article belongs to the Special Issue DNA Barcodes for Evolution and Biodiversity—2nd Edition)
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27 pages, 2190 KB  
Article
Heat Stress Induces Partial Resistance to Tomato Bushy Stunt Virus in Nicotiana benthamiana Via Combined Stress Pathways
by Nurgul Iksat, Almas Madirov, Dana Artykbayeva, Oleksiy Shevchenko, Kuralay Zhanassova, Zhaksat Baikarayev and Zhaksylyk Masalimov
Viruses 2025, 17(9), 1250; https://doi.org/10.3390/v17091250 - 16 Sep 2025
Cited by 3 | Viewed by 629
Abstract
Global climate change is the impact of combined abiotic and biotic stresses negatively affecting plant health and productivity. This study investigated the molecular and cellular responses of Nicotiana benthamiana L. plants to wild-type tomato bushy stunt virus (wtTBSV) infection under conditions of pre-existing [...] Read more.
Global climate change is the impact of combined abiotic and biotic stresses negatively affecting plant health and productivity. This study investigated the molecular and cellular responses of Nicotiana benthamiana L. plants to wild-type tomato bushy stunt virus (wtTBSV) infection under conditions of pre-existing heat stress. The experiments were conducted under controlled temperature regimes of 30 °C and 37 °C in combination with virus challenge. Morphological and biochemical analyses in plants under the influence of combined stress showed the alleviation of disease symptoms, reduction in virus content and reduced expression levels of viral proteins P19 and P33. Under conditions of combined stress, accumulation of hydrogen peroxide and malondialdehyde, as well as activation of the antioxidant enzyme catalase, especially in root tissues, were observed. Notably, at 37 °C, virus infection was suppressed despite high levels of oxidative stress, whereas at 30 °C, a marked decrease in the expression of host factors was observed. The results indicate that thermal stress modulates virus–host interactions and activates defense mechanisms, including antioxidant and RNA interference pathways. Therefore, temperature adaptation can be considered as a promising strategy for enhancing plant resistance to viral pathogens under climate changes. Full article
(This article belongs to the Special Issue Molecular and Biological Virus-Plant-Insect Vector Interactions)
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30 pages, 5327 KB  
Article
Seed-Derived Synthetic Microbial Communities (SynComs) from Medicago Wild Relatives Modulate Early Plant Microbiome Assembly and Phenotypic Traits in Lucerne (Medicago sativa L.)
by Shenali Subodha Herath Dissanayakalage, Jatinder Kaur, Tongda Li, Adam M. Dimech and Timothy I. Sawbridge
Microorganisms 2025, 13(9), 2114; https://doi.org/10.3390/microorganisms13092114 - 10 Sep 2025
Cited by 1 | Viewed by 1179
Abstract
Seed-associated microbiomes represent an underexplored frontier in synthetic community (SynCom) design, particularly in forage legumes such as lucerne (Medicago sativa L.), where early microbial assembly can shape plant development. Crop wild relatives (CWRs) harbour more diverse seed microbiomes and may contain microbes [...] Read more.
Seed-associated microbiomes represent an underexplored frontier in synthetic community (SynCom) design, particularly in forage legumes such as lucerne (Medicago sativa L.), where early microbial assembly can shape plant development. Crop wild relatives (CWRs) harbour more diverse seed microbiomes and may contain microbes with greater functional potential than domesticated lucerne. To test this, SynComs were constructed from seed-borne bacteria isolated from M. laciniata (drought-resilient) and M. littoralis (salt-tolerant). Two three-strain SynComs were assembled from taxa consistently shared across lucerne and its CWRs, and a third six-strain ‘Mix’ SynCom combined both sets. The aim of this study was to assess whether these SynComs exert phenotypic effects on lucerne growth when used as seed inocula alongside the native microbiome during early development and later vegetative stages under well-watered and drought conditions. Inoculation enhanced germination and early growth, with the Mix SynCom producing the strongest gains. Microbiome profiling at 24 days revealed treatment-specific restructuring, with enrichment of beneficial taxa and microbial coalescence. While early-stage benefits diminished at later stages, and drought ultimately reduced biomass across all treatments, the findings demonstrate that CWR-derived SynComs can enhance lucerne establishment and early growth while restructuring host microbiomes, providing a framework for seed-applied microbial solutions in sustainable agriculture. Full article
(This article belongs to the Special Issue Advances in Agro-Microbiology)
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23 pages, 26090 KB  
Article
Life History Plasticity and Gregarious Cocooning Behavior of the Wild Silkmoth Cricula trifenestrata Helfer (Lepidoptera: Saturniidae) on a Novel Host Plant, Cinnamon, in Thailand
by Kanitsara Magnussen, Motoyuki Sumida, Suwat Promma, Anongrit Kangrang, Fritz Vollrath, Thanupong Thunchailertthakul and Chirapha Butiman
Insects 2025, 16(9), 914; https://doi.org/10.3390/insects16090914 - 1 Sep 2025
Viewed by 1005
Abstract
Cricula trifenestrata Helfer was recently documented on cinnamon (Cinnamomum spp.), a novel host plant in Thailand. We compared life history and behavior under natural field, semi-natural caged, and laboratory conditions on cinnamon, plus opportunistic collection from hog plum (Spondias pinnata). [...] Read more.
Cricula trifenestrata Helfer was recently documented on cinnamon (Cinnamomum spp.), a novel host plant in Thailand. We compared life history and behavior under natural field, semi-natural caged, and laboratory conditions on cinnamon, plus opportunistic collection from hog plum (Spondias pinnata). Laboratory rearing significantly extended development (62.30 ± 3.68 days) versus field conditions (56.30 ± 1.83 days, p < 0.001) through delayed egg and pupal stages, indicating life history plasticity. We discovered density-dependent oviposition plasticity (linear arrangements in field: 155.6 ± 84.9 eggs/batch; clustered in laboratory) and novel gregarious cocooning behavior, where 85.1% of individuals (n = 47 sites) aggregated to form communal clusters with unique reticulated architecture. Female cocoon shell ratio (CSR) was significantly higher in laboratory (5.02 ± 0.72%) and hog plum cohorts (5.30 ± 0.30%) than field conditions (3.92 ± 0.51%, p = 0.002). Opportunistic rearing yielded >2 kg fresh cocoons, with clusters reaching 0.220 kg. These findings establish biological baselines for C. trifenestrata Helfer on cinnamon, reveal sophisticated social behaviors expanding lepidopteran sociality concepts, and demonstrate commercial potential for sustainable sericulture integrated with pest management. Full article
(This article belongs to the Collection Science of Insect Rearing Systems)
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17 pages, 3958 KB  
Article
ZmNLR-7-Mediated Synergistic Regulation of ROS, Hormonal Signaling, and Defense Gene Networks Drives Maize Immunity to Southern Corn Leaf Blight
by Bo Su, Xiaolan Yang, Rui Zhang, Shijie Dong, Ying Liu, Hubiao Jiang, Guichun Wu and Ting Ding
Curr. Issues Mol. Biol. 2025, 47(7), 573; https://doi.org/10.3390/cimb47070573 - 21 Jul 2025
Viewed by 727
Abstract
The rapid evolution of pathogens and the limited genetic diversity of hosts are two major factors contributing to the plant pathogenic phenomenon known as the loss of disease resistance in maize (Zea mays L.). It has emerged as a significant biological stressor [...] Read more.
The rapid evolution of pathogens and the limited genetic diversity of hosts are two major factors contributing to the plant pathogenic phenomenon known as the loss of disease resistance in maize (Zea mays L.). It has emerged as a significant biological stressor threatening the global food supplies and security. Based on previous cross-species homologous gene screening assays conducted in the laboratory, this study identified the maize disease-resistance candidate gene ZmNLR-7 to investigate the maize immune regulation mechanism against Bipolaris maydis. Subcellular localization assays confirmed that the ZmNLR-7 protein is localized in the plasma membrane and nucleus, and phylogenetic analysis revealed that it contains a conserved NB-ARC domain. Analysis of tissue expression patterns revealed that ZmNLR-7 was expressed in all maize tissues, with the highest expression level (5.11 times) exhibited in the leaves, and that its transcription level peaked at 11.92 times 48 h post Bipolaris maydis infection. Upon inoculating the ZmNLR-7 EMS mutants with Bipolaris maydis, the disease index was increased to 33.89 and 43.33, respectively, and the lesion expansion rate was higher than that in the wild type, indicating enhanced susceptibility to southern corn leaf blight. Physiological index measurements revealed a disturbance of ROS metabolism in ZmNLR-7 EMS mutants, with SOD activity decreased by approximately 30% and 55%, and POD activity decreased by 18% and 22%. Moreover, H2O2 content decreased, while lipid peroxide MDA accumulation increased. Transcriptomic analysis revealed a significant inhibition of the expression of the key genes NPR1 and ACS6 in the SA/ET signaling pathway and a decrease in the expression of disease-related genes ERF1 and PR1. This study established a new paradigm for the study of NLR protein-mediated plant immune mechanisms and provided target genes for molecular breeding of disease resistance in maize. Overall, these findings provide the first evidence that ZmNLR-7 confers resistance to southern corn leaf blight in maize by synergistically regulating ROS homeostasis, SA/ET signal transduction, and downstream defense gene expression networks. Full article
(This article belongs to the Special Issue Molecular Mechanisms in Plant Stress Tolerance)
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20 pages, 6718 KB  
Article
Genetic Diversification of Tomato and Agricultural Soil Management Shaped the Rhizospheric Microbiome of Tomato (Solanum lycopersicum)
by Máximo González, Juan Pablo Araya-Angel, Ashlie Muñoz, Adalid Alfaro-Flores, Massimiliano Cardinale and Alexandra Stoll
Microorganisms 2025, 13(7), 1550; https://doi.org/10.3390/microorganisms13071550 - 1 Jul 2025
Cited by 1 | Viewed by 930
Abstract
The domestication process not only reduced the allelic diversity of tomato genotypes but also affected the genetic traits associated to microbial recruitment, their composition, and their diversity in different compartments of the plant host. Additionally, this process included the transition from natural to [...] Read more.
The domestication process not only reduced the allelic diversity of tomato genotypes but also affected the genetic traits associated to microbial recruitment, their composition, and their diversity in different compartments of the plant host. Additionally, this process included the transition from natural to agricultural soils, which differ in nutrient availability, physicochemical properties, and agricultural practices. Therefore, modern cultivars may fail to recruit microbial taxa beneficial to their wild relatives, potentially losing important ecological functions. In this study, we analyzed the phylogenetic relationship and the rhizosphere microbiota of four tomato genotypes, Solanum chilense (wild species), S. lycopersicum var. cerasiforme (Cherry tomato), and the S. lycopersicum landrace ‘Poncho Negro’ and the modern cultivar ‘Cal Ace’, grown in both natural and agricultural soils. Microbial communities were identified using 16S rRNA (bacteria) and ITS2 (fungi) amplicon sequencing, allowing cross-domain taxonomic characterization. While the soil type was the main driver of overall microbial diversity, the host genotype influenced the recruitment of specific microbial taxa, which exhibited different recruitment patterns according to the genetic diversification of Solanum genotypes and soil types. Additionally, co-occurrence network analysis identified two main clusters: first, taxa did not show any preferential associations to particular genotypes or soil types, while the second cluster revealed specific microbial patterns associated to fungal taxa in natural soil and bacterial taxa in agricultural soil. Finally, the functional analysis suggested the loss of specific functions through tomato domestication independently of soil type. These findings highlight the role of the plant genotype as a fine-tuning factor in microbiome assembly, with implications for breeding strategies aimed at restoring beneficial plant–microbe interactions. Full article
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17 pages, 4220 KB  
Article
Disease-Resistance Functional Analysis and Screening of Interacting Proteins of ZmCpn60-3, a Chaperonin 60 Protein from Maize
by Bo Su, Lixue Mao, Huiping Wu, Xinru Yu, Chongyu Bian, Shanshan Xie, Temoor Ahmed, Hubiao Jiang and Ting Ding
Plants 2025, 14(13), 1993; https://doi.org/10.3390/plants14131993 - 30 Jun 2025
Viewed by 752
Abstract
Chaperonin 60 proteins plays an important role in plant growth and development as well as the response to abiotic stress. As part of the protein homeostasis system, molecular chaperones have attracted increasing attention in recent years due to their involvement in the folding [...] Read more.
Chaperonin 60 proteins plays an important role in plant growth and development as well as the response to abiotic stress. As part of the protein homeostasis system, molecular chaperones have attracted increasing attention in recent years due to their involvement in the folding and assembly of key proteins in photosynthesis. However, little is known about the function of maize chaperonin 60 protein. In the study, a gene encoding the chaperonin 60 proteins was cloned from the maize inbred line B73, and named ZmCpn60-3. The gene was 1, 818 bp in length and encoded a protein consisting of 605 amino acids. Phylogenetic analysis showed that ZmCpn60-3 had high similarity with OsCPN60-1, belonging to the β subunits of the chloroplast chaperonin 60 protein family, and it was predicted to be localized in chloroplasts. The ZmCpn60-3 was highly expressed in the stems and tassels of maize, and could be induced by exogenous plant hormones, mycotoxins, and pathogens; Overexpression of ZmCpn60-3 in Arabidopsis improved the resistance to Pst DC3000 by inducing the hypersensitive response and the expression of SA signaling-related genes, and the H2O2 and the SA contents of ZmCpn60-3-overexpressing Arabidopsis infected with Pst DC3000 accumulated significantly when compared to the wild-type controls. Experimental data demonstrate that flg22 treatment significantly upregulated transcriptional levels of the PR1 defense gene in ZmCpn60-3-transfected maize protoplasts. Notably, the enhanced resistance phenotype against Pseudomonas syringae pv. tomato DC3000 (Pst DC3000) in ZmCpn60-3-overexpressing transgenic lines was specifically abolished by pretreatment with ABT, a salicylic acid (SA) biosynthetic inhibitor. Our integrated findings reveal that this chaperonin protein orchestrates plant immune responses through a dual mechanism: triggering a reactive oxygen species (ROS) burst while simultaneously activating SA-mediated signaling cascades, thereby synergistically enhancing host disease resistance. Additionally, yeast two-hybrid assay preliminary data indicated that ZmCpn60-3 might bind to ZmbHLH118 and ZmBURP7, indicating ZmCpn60-3 might be involved in plant abiotic responses. The results provided a reference for comprehensively understanding the resistance mechanism of ZmCpn60-3 in plant responses to abiotic or biotic stress. Full article
(This article belongs to the Special Issue Functional Genomics and Molecular Breeding of Crops—2nd Edition)
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20 pages, 1341 KB  
Article
Endophytic Diversity in Sicilian Olive Trees: Identifying Optimal Conditions for a Functional Microbial Collection
by Dalila Crucitti, Stefano Barone, Salvadora Navarro-Torre, Paola Quatrini, Francesco Carimi, Tiziano Caruso and Davide Pacifico
Microorganisms 2025, 13(7), 1502; https://doi.org/10.3390/microorganisms13071502 - 27 Jun 2025
Viewed by 856
Abstract
This study aims to identify the optimal conditions—host, plant material, seasonality, and agricultural practices—for isolating and developing a collection of culturable endophytic microorganisms to support sustainable Olea europaea L. cultivation. Samples were collected from three Sicilian olive cultivars (‘Nocellara del Belice’, ‘Nocellara Etnea’, [...] Read more.
This study aims to identify the optimal conditions—host, plant material, seasonality, and agricultural practices—for isolating and developing a collection of culturable endophytic microorganisms to support sustainable Olea europaea L. cultivation. Samples were collected from three Sicilian olive cultivars (‘Nocellara del Belice’, ‘Nocellara Etnea’, and ‘Nocellara Messinese’) and six wild olive accessions across different phenological phases and under organic and conventional agronomic management. Endophytes were isolated from leaves and twigs using a culture-dependent approach, and their taxonomic diversity and plant-growth-promoting (PGP) traits were analyzed. A total of 133 endophytic isolates were identified, spanning bacterial (Proteobacteria, Firmicutes, and Actinobacteria) and fungal (Ascomycota and Basidiomycota) phyla. Wild olive trees contributed more than cultivated varieties to enriching the diversity and composition of culturable endophyte collection as well as twigs instead of leaves. Winter sampling allowed to implement the taxonomic genera of olive endophyte collection. Both farming systems favored an increase in the composition of microbial collection, though organic farming systems supported greater microbial richness. Functional analysis highlighted key PGP traits in a selection of bacterial isolates, including indole-3-acetic acid and siderophore production, nitrogen fixation, and antifungal activity. Bacillus spp. dominated enzymatic activities, such as amylase, protease, and lipase production, as well as antifungal activity against the olive fungal pathogen Neofusicoccum vitifusiforme. This research highlights the significant diversity and functional potential of Mediterranean olive endophytes. Our findings emphasize the role of native microbial communities as bio-inoculants, promoting plant growth, nutrient uptake, and disease resistance. These insights lay the groundwork for developing targeted olive-microbial consortia for biocontrol and stress tolerance applications. Full article
(This article belongs to the Special Issue Plant Growth-Promoting Bacteria)
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17 pages, 2514 KB  
Article
Predicting Potential Habitats and the Conservation of the Tasar Silkworm (Antheraea mylitta) in the Similipal Biosphere Reserve, Odisha, India
by Rakesh Ranjan Thakur, Debabrata Nandi, Dillip Kumar Bera, Saranjit Singh, Roshan Beuria, Priyanka Mishra, Fahdah Falah Ben Hasher, Maya Kumari and Mohamed Zhran
Sustainability 2025, 17(13), 5824; https://doi.org/10.3390/su17135824 - 24 Jun 2025
Viewed by 1271
Abstract
The tasar silk production of India’s sericulture industry supports tribal livelihoods and economic sustainability. However, Antheraea mylitta Drury, 1773, the primary species for tasar silk, faces habitat threats due to deforestation, climate change, and anthropogenic pressures. This study evaluates the distribution and habitat [...] Read more.
The tasar silk production of India’s sericulture industry supports tribal livelihoods and economic sustainability. However, Antheraea mylitta Drury, 1773, the primary species for tasar silk, faces habitat threats due to deforestation, climate change, and anthropogenic pressures. This study evaluates the distribution and habitat suitability of wild tasar silkworm using multi-criteria approach, Geographic Information System (GIS), Remote Sensing (RS), and ecological niche modeling using the MaxEnt algorithm. Field surveys were conducted to collect cocoon samples, and the analysis of environmental parameters and assessment of soil micronutrient influences were also carried out. The MaxEnt model predictions indicate that the Central, Western, and Southern zones of Mayurbhanj, encompassing the Similipal Biosphere Reserve, provide the most suitable habitats. The jackknife test confirmed that these climatic variables collectively contributed 68.7% to the habitat suitability model. This study highlights the impact of habitat fragmentation and deforestation on tasar silkworm populations, emphasizing the need for conservation strategies, sustainable forest management, and afforestation programs. The findings highlight the following key conservation strategies: restoring habitats in Similipal, enforcing anti-deforestation laws, promoting community-led planting of host trees, and adopting climate-resilient silk farming to protect biodiversity and support tribal livelihoods. Full article
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11 pages, 1440 KB  
Communication
GAG Protein of Arabidopsis thaliana LTR Retrotransposon Forms Retrosome-like Cytoplasmic Granules and Activates Stress Response Genes
by Alexander Polkhovskiy, Roman Komakhin and Ilya Kirov
Plants 2025, 14(13), 1894; https://doi.org/10.3390/plants14131894 - 20 Jun 2025
Viewed by 1127
Abstract
LTR retrotransposons are widespread genomic elements that significantly impact genome structure and function. In Arabidopsis thaliana, the EVD LTR retrotransposon encodes a GAG protein essential for retrotransposon particle assembly. Here, we present a comprehensive analysis of the structural features, intracellular localization, and [...] Read more.
LTR retrotransposons are widespread genomic elements that significantly impact genome structure and function. In Arabidopsis thaliana, the EVD LTR retrotransposon encodes a GAG protein essential for retrotransposon particle assembly. Here, we present a comprehensive analysis of the structural features, intracellular localization, and transcriptomic effects of the EVD GAG (evdGAG) protein. Using AlphaFold3, we identified canonical capsid (CA-NTD and CA-CTD) and nucleocapsid (NC) domains, with predicted disordered regions likely facilitating oligomerization. Transient expression of GFP-tagged evdGAG in protoplasts of A. thaliana and distant plant species (Nicotiana benthamiana and Helianthus annuus) revealed the formation of multiple large cytoplasmic aggregates resembling retrosomes, often localized near the nucleus. Stable overexpression of evdGAG in wild-type and ddm1 mutant backgrounds induced significant transcriptomic changes, including up-regulation of stress response and defense-related genes and downregulation of photosynthesis and chloroplast-associated pathways. Importantly, genes linked to stress granule formation were also up-regulated, suggesting a role for evdGAG in modulating cellular stress responses. Our findings provide novel insights into the cellular and molecular properties of plant retrotransposon GAG proteins and their influence on host gene expression. Full article
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20 pages, 5354 KB  
Article
An Evaluation of the Anti-Rabies Effect of Bufotenine in Murine Rabies Models to Determine Its Mechanism of Action
by Patrícia Mariano Cruz Pereira, Andréa de Cássia Rodrigues Silva, Karen Miyuki Asano, Adriana da Costa Neves, Juliana Mozer Sciani, Daniel Carvalho Pimenta and Hugo Vigerelli
Viruses 2025, 17(6), 808; https://doi.org/10.3390/v17060808 - 31 May 2025
Viewed by 1328
Abstract
Molecules from animals or plant species have been investigated with the aim of treating diseases of epidemiological importance, such as rabies, which is a viral, acute, and infectious disease with approximately 100% lethality. Rabies has been one of the main causes of death [...] Read more.
Molecules from animals or plant species have been investigated with the aim of treating diseases of epidemiological importance, such as rabies, which is a viral, acute, and infectious disease with approximately 100% lethality. Rabies has been one of the main causes of death in humans concerning infectious diseases. This work investigated the action and preliminary mechanisms of the alkaloid bufotenine in an in vivo model with the rabies virus. A wild-type virus was titrated and injected into mice for the determination of DL50 in the presence or absence of bufotenine. The results reveal that bufotenine has possible action in modulating the immune response of the studied host, suggesting interference in delaying symptom manifestation. Regarding the histological analysis of the CNS of the animals, bufotenine possibly prevented the presence of mononuclear cell inflammatory infiltrate in the meninx’s region compared to the positive control and possibly contributed to reducing neuronal degeneration. The use of the bufotenine extracted from the seed of white angico, a plant representative of Brazilian flora, contributed to antiviral activity with effects on the immunological aspects of the host infected by the rabies virus. Full article
(This article belongs to the Special Issue Rabies Virus: Treatment and Prevention)
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27 pages, 5135 KB  
Review
Status and Distribution of Diseases Caused by Phytoplasmas in Africa
by Shakiru Adewale Kazeem, Agnieszka Zwolińska, Joseph Mulema, Akindele Oluwole Ogunfunmilayo, Shina Salihu, Joy Oluchi Nwogwugwu, Inusa Jacob Ajene, Justina Folasayo Ogunsola, Adedapo Olutola Adediji, Olubusola Fehintola Oduwaye, Kouamé Daniel Kra, Mustafa Ojonuba Jibrin and Wei Wei
Microorganisms 2025, 13(6), 1229; https://doi.org/10.3390/microorganisms13061229 - 27 May 2025
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Abstract
Phytoplasma (“Candidatus Phytoplasma” species) diseases have been reported globally to severely limit the productivity of a wide range of economically important crops and wild plants causing different yellows-type diseases. With new molecular detection techniques, several unknown and known diseases with uncertain etiologies [...] Read more.
Phytoplasma (“Candidatus Phytoplasma” species) diseases have been reported globally to severely limit the productivity of a wide range of economically important crops and wild plants causing different yellows-type diseases. With new molecular detection techniques, several unknown and known diseases with uncertain etiologies or attributed to other pathogens have been identified as being caused by Phytoplasmas. In Africa, Phytoplasmas have been reported in association with diseases in a broad range of host plant species. However, the few reports of Phytoplasma occurrence in Africa have not been collated together to determine the status in different countries of the continent. Thus, this paper discusses the geographical distribution, detection techniques, insect vectors, alternative hosts and socio-economic impacts of Phytoplasma diseases in Africa. This is to create research perspectives on the disease’s etiology in Africa for further studies towards identifying and limiting their negative effects on the continent’s agricultural economy. In Africa, Phytoplasmas recorded in different countries affecting different crops belong to eight groups (16SrI, 16SrII, 16SrIII, 16SrIV, 16SrVI, 16SrXI, 16SrXIV and 16SrXXII) out of the 37 groups and over 150 subgroups reported worldwide on the basis of their 16S rRNA RFLP profile. Lethal yellow disease was the most destructive Phytoplasma reported in Africa and has a high socio-economic impact. Full article
(This article belongs to the Special Issue Phytoplasmas and Phytoplasma Diseases)
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