Search Results (305)

Objective: Hepatitis B virus (HBV) is a globally distributed infectious disease affecting the liver. This literature review aims to summarize all available relevant information on the PubMed database about HBV’s connection to the microbiome and to consider possible treatment adjuncts. Materials and methods: Database used: PubMed. Keywords used: “HBV”, “Hepatitis B”, “microbiome”. In the PubMed database, 179 research publications were identified using these keywords; 69 studies were excluded as they were irrelevant or retracted. Of the remaining, 110 were analyzed in this literature review, and four additional literature sources were used to supply background information and context. Information was summarized. The analysed studies in total included 14,814 participants (excluding animal studies), of whom 8564 were HBV-infected individuals. Results: Results characterizing abundance or decrease in specific bacterial, viral, and fungal species are heterogeneous; multiple studies support that the HBV patient oral and fecal microbiome is different from that in healthy controls (HCs) and varies throughout disease progression. The HBV seems to transform the microbiome negatively, leading to dysbiosis and decreased microbial diversity in most studies. Evidence links HBV microbiome changes with influence on HbeAg seroconversion, HBV-DNA load, metabolic pathways, liver cirrhosis, and hepatocellular carcinoma. The research proposes that members of microbiota could potentially promote or protect against liver injury in HBV. Four studies proposed that the plasma virome in HBV patients was primarily composed of members of the Anelloviridae. One study researched a parasite (Entamoeba gingivalis) in HBV patients. Two studies analyzed HBV patients’ fungal profiles. Conclusions: Microbiota research, although promising, at the present moment is heterogeneous. HBV patients’ microbiota is distinguishable from HCs, and multiple studies have tried to identify the HBV characteristic microbiome; however, more precise information is needed to draw conclusions. Fecal microbiota transplantation and probiotics have the potential to be therapy adjuncts for HBV patients, but more research is needed. Full article

Background/Objectives: Forest therapy has demonstrated stress-reducing and immune-enhancing effects, yet its simultaneous impact on cognitive function, stress biomarkers, and oral microbiota in older adults remains unexplored. This study aimed to evaluate the effects of an 8-week community-based village forest experience program on cognitive function, salivary cortisol, and oral pathogenic bacteria in community-dwelling older adults. Methods: A total of 125 older adults (mean age 82.2 ± 5.3 years; 87.2% female) from 17 senior centers participated in a single-arm, pre–post intervention study. Cognitive function was assessed using the Cognitive Impairment Screening Test (CIST), salivary cortisol was measured by ELISA, and seven oral bacterial species were quantified by qPCR. Results: CIST scores improved significantly (p = 0.003, d = 0.27), with the suspected cognitive impairment subgroup showing greater improvement (d = 0.66) and 48.8% transitioning to normal classification. Salivary cortisol decreased significantly (p = 0.002), and total bacterial load, Porphyromonas gingivalis, and Tannerella forsythia were significantly reduced. The 80–84-year age group showed the greatest cognitive gain, whereas participants aged 85 and older showed no significant change. Conclusions: An accessible village forest program may simultaneously benefit cognitive function, stress, and oral health in older adults with early-stage cognitive decline. Controlled studies are needed to confirm causality and elucidate the underlying mechanisms. Full article

Automated milk feeders (AMFs) offer significant advantages in promoting natural feeding behavior in calves and reducing manual labor. With widespread use, the impact of AMF hygiene on calf health has attracted increasing research attention, as inadequate cleaning protocols may lead to bacterial accumulation on calf-contact surfaces and subsequent health risks for calves. This study aimed to quantify bacterial contamination on AMF surfaces, evaluate the cleaning efficacy of slightly acidic electrolyzed water (SAEW) compared to warm water and chemical disinfectants (n = two total samples), and optimize SAEW cleaning parameters using response surface methodology (RSM). Results revealed that bacterial loads on five high-frequency calf-contact surfaces ranged from 5.48 to 8.21 log₁₀ CFU/cm². SAEW at 60 mg/L achieved significantly higher cleaning efficacy than warm water and chemical disinfectants under field conditions (p < 0.01). Through RSM optimization (highly significant (p < 0.001)), the optimal SAEW cleaning parameters were determined as follows: cleaning time of 35 s, cleaning temperature of 78 °C, and available chlorine concentration (ACC) of 108 mg/L. Under the optimized parameters, bacterial and adenosine triphosphate (ATP) removal rates reached approximately 98%. These findings suggest that SAEW is a promising alternative sanitation agent for AMFs, provide preliminary parameters for rapid sanitation under the tested conditions, and hold the potential to support the standardized hygiene control of calf feeding equipment. Full article

Background: The emergence of alternative methods of obtaining groceries since the COVID-19 pandemic has raised new concerns regarding food safety. In this study, we sought to evaluate these concerns by evaluating how the procurement method of ground beef impacts the microbial load in the beef, as this has not been thoroughly studied. Methods: Specifically, we compared beef samples obtained from in-store shopping, grocery delivery, and meal kit delivery services to determine if these new, more convenient methods of grocery shopping impact the total microbial load or Escherichia coli present in the beef. We homogenized a total of 65 beef samples and plated dilutions on trypticase soy agar, MacConkey agar, and CHROMagar. Results: We found that in-store samples had the highest microbial load with an average of 5.06 log CFU/g, while grocery delivery samples resulted in an average of 4.76 log CFU/g and meal kit samples had an average of 4.23 log CFU/g when plated on TSA. This represents a 6.7-fold change between in-store samples and meal kit samples. These differences were not statistically significant (p = 0.1, ANOVA). When plated on MacConkey agar, in-store samples had a bacterial count at 3.0 log CFU/g, while grocery delivery samples had 2.99 log CFU/g and meal kit delivered samples had 3.05 log CFU/g. Suspected E. coli O157 colonies were detected using CHROMagar plates, as these plates function to change the coloration of positive E. coli O157 colonies to pink. Suspected E. coli O157 colonies were observed in three in-store samples, two grocery delivery samples, and one meal kit sample. After confirmatory agglutination testing, one meal kit sample was confirmed as E. coli O157. Conclusions: While trends suggest possible lower microbial contamination in delivery methods versus in-store shopping procurement, no statistical significance between methods was found. These findings indicate no significant changes in microbial loads in delivered ground beef, and the high variance suggests that all procurement methods still pose some level of risk. Full article

Swine wastewater is a high-strength agricultural effluent characterized by high organic loading, elevated ammonium nitrogen and phosphorus concentrations, and frequently low C/N ratios, which make simultaneous pollutant removal and resource recovery challenging. Conventional physicochemical, anaerobic, and aerobic treatment technologies are widely used, but they are often constrained by high energy demand, ammonia inhibition, insufficient nitrogen recovery under low C/N conditions, and limited resource valorization. This review comparatively evaluates these conventional technologies alongside microalgal and algal–bacterial symbiotic (ABS) systems for swine wastewater treatment and resource recovery. Particular attention is given to algal–bacterial interactions, oxygen and carbon exchange, nitrogen and phosphorus removal pathways, reactor configurations, key operational parameters, and biomass valorization routes. The reviewed evidence shows that conventional anaerobic–aerobic systems generally achieve stable COD removal (>80%) but often provide limited nitrogen recovery, whereas microalgal systems can remove 80–90% of nitrogen and phosphorus but remain restricted by ammonia toxicity, light attenuation, and biomass harvesting costs. Under optimized conditions, ABS granular systems have achieved >90% COD removal, >80% total nitrogen removal, and 70–95% total phosphorus removal, while also improving biomass settleability and process stability. Overall, ABS systems offer a promising route to shift swine wastewater treatment from discharge-oriented pollution control toward resource-oriented management. Future research should prioritize reactor scale-up, long-term operational stability, biological monitoring, and economically viable biomass valorization. Full article

Background/Objectives: Hospital-acquired and fracture-related infections remain major complications in orthopedic trauma surgery, with significant clinical and socio-economic impact. Antibacterial implant surface coatings represent a promising strategy to reduce early postoperative bacterial adhesion and biofilm formation. Methods: This retrospective matched case–control study evaluated the clinical effectiveness of an antibiotic-free fast-resorbable hyaluronic acid and poly-d, l-lactide hydrogel (DAC^®) applied intraoperatively to orthopedic implants. A total of 222 patients with comorbidities who underwent open reduction and internal fixation between May 2023 and April 2024 in two trauma centers were included: 99 patients received the DAC^® coating and 123 served as controls with standard fixation. The primary endpoint was infection incidence within 6 months; secondary endpoints included wound complications, revision surgery, prolonged antibiotic therapy, and bone healing. Results: Postoperative infection incidence was significantly lower in the DAC^® group compared with controls (0.7% vs. 5.3%; p = 0.0363). Wound complications were also reduced (1.3% vs. 8.0%; p = 0.028), and only one patient in the DAC^® cohort required additional surgical interventions or prolonged antibiotic therapy. Bone healing outcomes were comparable between groups, with no delayed unions reported in the treated cohort. Conclusions: Even if larger prospective studies with longer follow-up are required to further confirm these findings and better define long-term safety and effectiveness, the routine intraoperative use of DAC^® hydrogel without antibiotic loading appears to be a safe and promising strategy to reduce early postoperative infections and wound complications in orthopedic trauma patients with comorbidities. Full article

Background and Objectives: The use of St. John’s wort (Hypericum perforatum) in periodontal therapy remains underexplored despite its anti-inflammatory, antimicrobial, and potential osteoregenerative effects. This was the first study aiming to determine the in vitro efficacy of ultrasonic debridement combined with a H. perforatum extract against dental biofilms. Materials and Methods: A multispecies biofilm model comprising Streptococcus mutans, Porphyromonas gingivalis, Fusobacterium nucleatum, and Tannerella forsythia was established on bovine dentin discs. Biofilms were treated with saline solution (control), ultrasonic debridement alone, ultrasonic debridement combined with H. perforatum extract (0.5%), and ultrasonic debridement combined with chlorhexidine (0.12%). Biofilm biomass was quantified with the crystal violet assay, and total viable counts were determined by colony-forming unit (CFU) analysis. Quantitative PCR was used to assess the genomic load of P. gingivalis. Biofilm architecture and bacterial viability were further examined using confocal laser scanning microscopy (CLSM). Results: Ultrasonic debridement combined with H. perforatum extract significantly reduced biofilm biomass compared to saline irrigation (p < 0.001) and ultrasonic debridement alone (p < 0.01). Similar reductions were observed for viable bacterial counts and P. gingivalis genomic load. The antimicrobial effect of the plant extract was comparable to that of chlorhexidine, with only minor differences in efficacy. Confocal microscopy confirmed marked disruption of biofilm architecture and decreased bacterial viability following treatment with the plant extract. Conclusions: Within the limitations of this in vitro model, H. perforatum extract demonstrated measurable antibiofilm activity when used as an adjunct to ultrasonic debridement. These findings provide proof-of-concept evidence supporting the antimicrobial potential of this plant-derived extract under controlled laboratory conditions. Further preclinical studies and well-designed clinical investigations are required to determine its therapeutic relevance in periodontal treatment. Full article

This 90-day trial evaluated the integrated benefits of biofloc technology (BFT) in lined ponds for intensive Penaeus vannamei culture, comparing it with a conventional water-exchange (WE) system. The BFT system maintained favorable water quality with a 68.4% reduction in cumulative water exchange. Concentrations of toxic total ammonia–nitrogen (TAN) and nitrite–nitrogen (NO₂⁻-N) were better controlled, and total suspended solids (TSS) stabilized within a beneficial range (150–200 mg L⁻¹). Microbial analysis indicated that BFT significantly increased total bacterial abundance in both culture water and shrimp hepatopancreas while reducing the total Vibrio-to-bacteria ratio in culture water to below 6%, significantly lower than in the WE system (>18%). Moreover, BFT significantly lowered the loads of specific pathogens, acute hepatopancreatic necrosis disease (AHPND)-causing Vibrio parahaemolyticus, and Enterocytozoon hepatopenaei (EHP) in both culture water and shrimp hepatopancreas. Regarding production performance, BFT significantly enhanced shrimp survival rate (82.4% vs. 71.5%), yield (3460 vs. 2948 kg pond⁻¹), and water productivity (0.85 vs. 0.28 kg m⁻³), while lowering the feed conversion ratio (1.16 vs. 1.33). In conclusion, BFT achieves stable water quality, effective pathogen suppression, and enhanced production efficiency through microbial regulation, offering a viable water-saving, environmentally sound, and disease-resilient strategy for intensive P. vannamei culture. Full article

Chrysomya megacephala is a synanthropic fly with a high potential to act as a mechanical vector of pathogenic bacteria, surpassing Musca domestica in both bacterial load and diversity. Native to Asia and Africa, it has become a cosmopolitan species, successfully adapting to a wide range of environments, including natural ecosystems. In Colombia, studies on its role as a vector are limited and have largely relied on traditional culturing methods. This study aimed to characterize the pathogenic bacterial microbiota associated with C. megacephala using 16S rRNA gene sequencing in urban, rural, and forest settings of a coastal tourist city. Flies were collected using Van Someren Rydon traps with attractants and sterile materials. Bacterial identification was performed through Oxford Nanopore MinION sequencing (Manufactured by Oxford Nanopore Technologies, Oxford, UK). A total of 49 bacterial species were identified, with urban environments showing the highest taxonomic richness. The forest environment was characterized by a highly dominant community structure, led by Vagococcus carniphilus. Notably, 20 bacterial species of public health relevance were detected, including Clostridium botulinum, Clostridium perfringens, Ignatzschineria ureiclastica, Escherichia coli, and Streptococcus agalactiae. These findings indicate that bacterial community composition varies by environment and underscore the potential role of C. megacephala as a mechanical vector, highlighting the importance of surveillance for its public health implications. Full article

Efficient liquid storage of turkey semen is critical for artificial insemination, but its use is limited by bacteriospermia and oxidative damage. This study evaluated the effects of gentamicin supplementation in Glutac and Sperm Motility Medium (SMM) on bacterial load and sperm quality after 2 and 24 h of liquid storage. Semen from turkeys (n = 40) was assessed for motility, viability, plasma membrane and acrosome integrity, mitochondrial and metabolic activity, oxidative profile, apoptosis, DNA integrity, and microbiological status. The sperm motility and kinematic parameters declined significantly after 24 h in all the groups. However, both extenders (particularly SMM) maintained significantly higher motility than the untreated control. Gentamicin further improved the motility, viability, and plasma membrane and acrosome integrity. The mitochondrial activity and mitochondrial membrane potential were significantly higher in the extender-treated groups than in the controls at 2 and 24 h, whereas the superoxide and total ROS production were significantly higher in the controls. The total antioxidant capacity declined markedly in the untreated controls, especially after 24 h. Gentamicin significantly reduced bacterial load, most effectively in SMM, and decreased DNA fragmentation compared with the untreated controls. In conclusion, gentamicin supplementation—particularly in SMM—reduces bacteriospermia and oxidative stress while preserving turkey sperm quality during liquid storage. Full article

In this study, red cabbage-based intelligent/active composite films loaded with different concentrations of clove essential oil were prepared using red cabbage slurry as the matrix, polyvinyl alcohol as the binder, glycerol as the plasticizer, and Tween 80 as the emulsifier via the casting method. The physicochemical properties, color response behavior, and antioxidant and antibacterial activities of the films were systematically evaluated and their application in fish freshness monitoring was further investigated. The results showed that the incorporation of clove essential oil significantly enhanced the antioxidant and antibacterial properties of the films and optimized their mechanical properties within a certain concentration range. Although high concentrations slightly reduced the pH response sensitivity of the films, all composite films exhibited significant color-changing ability, achieving a visible transition from red to yellow-green within the pH range of 2–12. In fish preservation experiments, the composite films not only reflected the freshness status of fish in real time through color changes but also effectively inhibited the increase in total volatile basic nitrogen, total bacterial count, and pH value, thereby delaying spoilage. In this study, a green packaging material with an intelligent indicating function was successfully developed, providing a novel solution for the quality monitoring of high-value aquatic products. Full article

Background: Sonication of retrieved implants has emerged as a valuable diagnostic adjunct for Prosthetic Joint Infection (PJI), particularly in chronic infections or cases with prior antibiotic exposure. Quantitative culture of sonication fluid has been proposed to differentiate contamination from true infection; however, the diagnostic thresholds remain inconsistent across studies and may be influenced by methodological variability. Objectives: We aimed to evaluate bacterial counts obtained from the routine sonication of osteoarticular implants and assess their diagnostic performance across different infection types. Methods: A retrospective study was conducted (2011–2023) at a tertiary hospital. Implants from patients with PJI or Fracture-Related Infection (FRI), classified according to international criteria, were processed using a standardized sonication protocol, including centrifugation and inoculation onto multiple culture media. Quantitative results were expressed as CFU/mL. Bacterial counts were compared across infection types (acute PJI, chronic PJI, FRI), microbial characteristics, infection pattern, and affected joint using non-parametric tests. Results: A total of 457 sonicated implants were analyzed, including 316 PJI samples (26.3% acute; 73.7% chronic) and 141 FRI samples. The median bacterial count was 40,000 CFU/mL (IQR 1000–100,000). No significant differences were found between prosthetic and osteosynthesis implants. Polymicrobial infections showed significantly higher counts than monomicrobial infections (p < 0.005). No significant differences were observed according to Gram stain or joint site. Acute PJI tended to show higher bacterial burdens than chronic PJI, although not significantly (p = 0.052). Conclusions: Quantitative sonication yields substantial variability in bacterial loads, with higher counts in polymicrobial infections and a trend toward increased counts in acute PJI. A threshold of ≥1000 CFU/mL appeared to be clinically meaningful within our protocol. These findings support the diagnostic utility of quantitative sonication and underscore the need for protocol-specific thresholds. Full article

The lemur tree frog (Agalychnis lemur), a critically endangered species, can benefit from ex situ conservation programs; however, managing amphibians under human care presents challenges, including the provision of appropriate nutrition. House crickets (Acheta domesticus), a common feeder insect, have an inverse calcium to phosphorus ratio (Ca:P; 0.15:1) and low calcium content (<0.3%). While gut-loading crickets with an 8% calcium diet can improve their calcium concentrations, no study has assessed the effects of dietary calcium on bone development in Agalychnis spp. Moreover, no study has examined how diet impacts the gut–skin axis and skin microbiome of these frogs. This study examined how crickets gut-loaded with either a 1.3% or 8% calcium diet affected lemur tree frog bone density and skin microbiome. We hypothesized that frogs consuming the 8% calcium diet would exhibit significantly higher Hounsfield units (HU; bone density) over time, as measured by micro-computed tomography (mCT), and that dietary calcium concentration would have no effect on skin bacterial and fungi microbiomes. Eleven juvenile lemur tree frogs underwent mCT scans at baseline and 90 and 180 days. Total body volume of interest analysis showed a significant increase in HU in the 8% calcium group compared to the 1.3% group (F = 9.9, p = 0.01). There was no significant difference noted in the alpha or beta diversities for the bacterial and fungal microbiomes between dietary groups. This study provides the first evidence of dietary calcium’s impact on bone density in lemur tree frogs, offering valuable insights for improving ex situ management of this species. Full article

This study focused on slightly to moderately PAH-contaminated farmland soils in freeze–thaw regions of Northeast China, aiming to fill the research gap in the in situ remediation mechanisms of PAHs under natural freeze–thaw conditions. A 12-month in situ experiment was conducted with four treatments—blank control (CK), biochar (BC), microbial agent (MA), and immobilized microorganisms (IM)—to verify that biochar-loaded IM alleviates temperature stress and sustains efficient PAH removal by regulating soil and microbial properties. PAH removal efficiency and soil chemical properties were monitored during both normal-temperature and freeze–thaw periods, and the soil bacterial community structure was analyzed at the end of the experiment. Results showed that IM achieved the optimal remediation performance with a total PAH removal rate of 72.53%, was least affected by temperature fluctuations, and maintained stable remediation during the freeze–thaw period. IM increased soil nutrient contents, with available potassium and nitrogen exerted positive effects on PAH degradation; it also enriched the functional genes K00626 and K00457 and comprehensively optimized the bacterial community. This study clarified the core remediation mechanism and provided scientific, technical, and theoretical support for related in situ remediation practices. Full article

Background/Objectives: Animal studies have shown that food additives may adversely affect the gut microbiome. However, the effect of food additives on the microbiome in adults with Crohn’s disease (CD) remains less explored. This study investigated the impact of food additives on gut microbiome and fibre fermentation capacity in adults with CD and healthy controls (HCs) using in vitro faecal fermentations. Methods: Faeces from 6 HCs and 6 patients with CD in clinical remission (Harvey Bradshaw Index < 5) were used for in vitro fermentation of a fibre mix with one of 12 food additives (calcium propionate, carboxymethylcellulose, carrageenan kappa, cinnamaldehyde, maltodextrin, polysorbate-80, potassium sorbate, sodium benzoate, sodium sulphite, titanium dioxide, turmeric, and xanthan gum). Short-chain fatty acids (SCFAs) were measured using gas chromatography, the microbiome was profiled with 16S rRNA amplicon sequencing and total bacterial load was measured with qPCR. Results: Maltodextrin increased acetate production in both groups. In HCs, turmeric increased acetate and butyrate production, sodium sulphite reduced acetate production, and maltodextrin reduced butyrate production. Microbiome Shannon α-diversity increased with titanium dioxide (both groups), and with carrageenan kappa only in patients with CD. In both groups, the addition of maltodextrin and polysorbate-80 induced significant shifts in microbiome structure (β-diversity). Significant shifts were seen with maltodextrin (HC: R² = 6.8%, p = 0.001; CD: R² = 5.1%, p = 0.004) and sodium sulphite (HC: R² = 6.9%, p = 0.001). Maltodextrin significantly decreased the estimated absolute abundance of Escherichia–Shigella in patients CD; sodium benzoate, potassium sorbate, and calcium propionate did so in HCs. Faecalibacterium decreased in the presence of polysorbate-80 in the HC and CD groups, as well as in the presence of maltodextrin in the CD group. Total bacterial load decreased with polysorbate-80, potassium sorbate, maltodextrin and calcium propionate in both groups. Xanthan gum decreased total bacterial load in HCs. Conclusion: Certain food additives significantly affected fibre fermentation capacity and microbiome structure, with only modest differences observed according to participants’ health status. Full article