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15 pages, 2107 KiB  
Article
The Different Spatial Distribution Patterns of Nitrifying and Denitrifying Microbiome in the Biofilters of the Recirculating Aquaculture System
by Wenwen Jiang, Tingting Liu, Shuting Li, Li Li, Kefeng Xu, Guodong Wang and Enmian Guo
Microorganisms 2025, 13(8), 1833; https://doi.org/10.3390/microorganisms13081833 - 6 Aug 2025
Abstract
In this study, the distribution patterns of the nitrifying and denitrifying microbiome in a large-scale biofilter (587.24 m3) in a cold freshwater recirculating aquaculture system (RAS) was investigated. Previous studies have revealed that the water quality, nitrification, and denitrification rates in [...] Read more.
In this study, the distribution patterns of the nitrifying and denitrifying microbiome in a large-scale biofilter (587.24 m3) in a cold freshwater recirculating aquaculture system (RAS) was investigated. Previous studies have revealed that the water quality, nitrification, and denitrification rates in the front (BFF), middle (BFM), and back (BFB) of this biofilter are different. The results showed the highest diversity of the denitrifying microbiome in the BFB, followed by BFF and BFM, whereas nitrifying microbiome diversity remained consistent across different positions. Two genera, Nitrosomonas and Nitrosospira, dominated the nitrifying microbiome, while Pseudomonas, Thauera, Cupriavidus, Dechloromonas, Azoarcus, and Paracoccus comprised the top six denitrifying genera. Principal coordinate analysis indicated a distinct spatial distribution pattern of the denitrifying microbiome but not the nitrifying microbiome. The genera Pseudomonas and Dechloromonas were the biomarkers of the BFF and BFB, respectively. Redundancy analysis showed that nitrite, nitrate, dissolved oxygen, and soluble reactive phosphorus influenced the functional microbiome distribution pattern. Network correlation analysis identified one nitrifying hub (Nitrosospira) in the BFF, five denitrifying hubs (Aromatoleum, Dechloromonas, Paracoccus, Ruegeria, and Thauera) in the BFM, and three denitrifying hubs (Azoarcus, Magnetospirillum, and Thauera) in the BFB. Exclusively negative correlations were found between hubs and its adjacent nodes in the BFF and BFB. This study demonstrates that habitat can shape the distribution patterns of the nitrifying and denitrifying microbiome in the biofilter of the RAS, with the BFF exhibiting greater benefits for the nitrification process. Full article
(This article belongs to the Special Issue Microbiome in Fish and Their Living Environment)
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22 pages, 885 KiB  
Article
MRI-Based Radiomics for Outcome Stratification in Pediatric Osteosarcoma
by Esther Ngan, Dolores Mullikin, Ashok J. Theruvath, Ananth V. Annapragada, Ketan B. Ghaghada, Andras A. Heczey and Zbigniew A. Starosolski
Cancers 2025, 17(15), 2586; https://doi.org/10.3390/cancers17152586 - 6 Aug 2025
Abstract
Background/Objectives: Osteosarcoma (OS) is the most common malignant bone tumor in children and adolescents; the survival rate is as low as 24%. Accurate prediction of clinical outcomes remains a challenge due to tumor heterogeneity and the complexity of pediatric cases. This study [...] Read more.
Background/Objectives: Osteosarcoma (OS) is the most common malignant bone tumor in children and adolescents; the survival rate is as low as 24%. Accurate prediction of clinical outcomes remains a challenge due to tumor heterogeneity and the complexity of pediatric cases. This study aims to improve predictions of progressive disease, therapy response, relapse, and survival in pediatric OS using MRI-based radiomics and machine learning methods. Methods: Pre-treatment contrast-enhanced coronal T1-weighted MR scans were collected from 63 pediatric OS patients, with an additional nine external cases used for validation. Three strategies were considered for target region segmentation (whole-tumor, tumor sampling, and bone/soft tissue) and used for MRI-based radiomics. These were then combined with clinical features to predict OS clinical outcomes. Results: The mean age of OS patients was 11.8 ± 3.5 years. Most tumors were located in the femur (65%). Osteoblastic subtype was the most common histological classification (79%). The majority of OS patients (79%) did not have evidence of metastasis at diagnosis. Progressive disease occurred in 27% of patients, 59% of patients showed adequate therapy response, 25% experienced relapse after therapy, and 30% died from OS. Classification models based on bone/soft tissue segmentation generally performed the best, with certain clinical features improving performance, especially for therapy response and mortality. The top performing classifier in each outcome achieved 0.94–1.0 validation ROC AUC and 0.63–1.0 testing ROC AUC, while those without radiomic features (RFs) generally performed suboptimally. Conclusions: This study demonstrates the strong predictive capabilities of MRI-based radiomics and multi-region segmentations for predicting clinical outcomes in pediatric OS. Full article
(This article belongs to the Special Issue The Roles of Deep Learning in Cancer Radiotherapy)
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16 pages, 466 KiB  
Article
Cognitive Distortions Associated with Loneliness: An Exploratory Study
by Kory Floyd, Colter D. Ray and Josephine K. Boumis
Behav. Sci. 2025, 15(8), 1061; https://doi.org/10.3390/bs15081061 - 5 Aug 2025
Abstract
Loneliness is a significant challenge for millions worldwide, with chronic loneliness having harmful effects on physical health, mental well-being, and relationships. Cognitive distortions play an important role in perpetuating loneliness. Psychological interventions targeting such distortions have been effective at alleviating feelings of loneliness. [...] Read more.
Loneliness is a significant challenge for millions worldwide, with chronic loneliness having harmful effects on physical health, mental well-being, and relationships. Cognitive distortions play an important role in perpetuating loneliness. Psychological interventions targeting such distortions have been effective at alleviating feelings of loneliness. However, less is known about which cognitive distortions are most prevalent among lonely individuals and how these distortions relate to loneliness and mental well-being. This exploratory study prescreened a Census-matched sample of 1000 U.S. adults for loneliness, then asked those in the top quartile (N = 237) to rate multiple patterns of cognitive distortion related to loneliness. Factor analyses identified six common and influential patterns of cognitive distortion (mindreading, future reward, catastrophizing, essentializing, deservedness, and externalizing). Essentializing was the most strongly endorsed factor, followed by mindreading and catastrophizing. Essentializing also evidenced the strongest correlation with loneliness. Additionally, the relationship between loneliness and participants’ stress was completely mediated by mindreading, catastrophizing, and essentializing. These findings highlight the importance of targeting specific cognitive distortions in loneliness interventions to effectively improve the mental well-being of lonely individuals. Full article
(This article belongs to the Section Cognition)
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18 pages, 810 KiB  
Article
The Impact of Technology, Economic Development, Environmental Quality, Safety, and Exchange Rate on the Tourism Performance in European Countries
by Zeki Keşanlı, Feriha Dikmen Deliceırmak and Mehdi Seraj
Sustainability 2025, 17(15), 7074; https://doi.org/10.3390/su17157074 - 4 Aug 2025
Abstract
The study investigates the contribution of technology (TECH), quantified by Internet penetration, in influencing tourism performance (TP) among the top ten touristic nations in Europe: France, Spain, Italy, Turkey, the United Kingdom, Germany, Greece, Austria, Portugal, and the Netherlands. Using panel data from [...] Read more.
The study investigates the contribution of technology (TECH), quantified by Internet penetration, in influencing tourism performance (TP) among the top ten touristic nations in Europe: France, Spain, Italy, Turkey, the United Kingdom, Germany, Greece, Austria, Portugal, and the Netherlands. Using panel data from 2000–2022, the study includes additional structural controls like environment quality, gross domestic production (GDP) per capita, exchange rate (ER), and safety index (SI). The Method of Moments Quantile Regression (MMQR) is employed to capture heterogeneous effects at different levels of TP, and Driscoll–Kraay standard error (DKSE) correction is employed to make the analysis robust against autocorrelation as well as cross-sectional dependence. Spectral–Granger causality tests are also conducted to check short- and long-run dynamics in the relationships. Empirical results are that TECH and SI are important in TP at all quantiles, but with stronger effects for lower-performing countries. Environmental quality (EQ) and GDP per capita (GDPPC) exert increasing impacts at upper quantiles, suggesting their importance in sustaining high-level tourism economies. ER effects are limited and primarily short-term. The findings highlight the need for integrated digital, environmental, and economic policies to achieve sustainable tourism development. The paper contributes to tourism research by providing a comprehensive, frequency-sensitive, and distributional analysis of macroeconomic determinants of tourism in highly developed European tourist destinations. Full article
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28 pages, 5073 KiB  
Article
Exploring the Potential of Nitrogen Fertilizer Mixed Application to Improve Crop Yield and Nitrogen Partial Productivity: A Meta-Analysis
by Yaya Duan, Yuanbo Jiang, Yi Ling, Wenjing Chang, Minhua Yin, Yanxia Kang, Yanlin Ma, Yayu Wang, Guangping Qi and Bin Liu
Plants 2025, 14(15), 2417; https://doi.org/10.3390/plants14152417 - 4 Aug 2025
Abstract
Slow-release nitrogen fertilizers enhance crop production and reduce environmental pollution, but their slow nitrogen release may cause insufficient nitrogen supply in the early stages of crop growth. Mixed nitrogen fertilization (MNF), combining slow-release nitrogen fertilizer with urea, is an effective way to increase [...] Read more.
Slow-release nitrogen fertilizers enhance crop production and reduce environmental pollution, but their slow nitrogen release may cause insufficient nitrogen supply in the early stages of crop growth. Mixed nitrogen fertilization (MNF), combining slow-release nitrogen fertilizer with urea, is an effective way to increase yield and income and improve nitrogen fertilizer efficiency. This study used urea alone (Urea) and slow-release nitrogen fertilizer alone (C/SRF) as controls and employed meta-analysis and a random forest model to assess MNF effects on crop yield and nitrogen partial factor productivity (PFPN), and to identify key influencing factors. Results showed that compared with urea, MNF increased crop yield by 7.42% and PFPN by 8.20%, with higher improvement rates in Northwest China, regions with an average annual temperature ≤ 20 °C, and elevations of 750–1050 m; in soils with a pH of 5.5–6.5, where 150–240 kg·ha−1 nitrogen with 25–35% content and an 80–100 day release period was applied, and the blending ratio was ≥0.3; and when planting rapeseed, maize, and cotton for 1–2 years. The top three influencing factors were crop type, nitrogen rate, and soil pH. Compared with C/SRF, MNF increased crop yield by 2.44% and had a non-significant increase in PFPN, with higher improvement rates in Northwest China, regions with an average annual temperature ≤ 5 °C, average annual precipitation ≤ 400 mm, and elevations of 300–900 m; in sandy soils with pH > 7.5, where 150–270 kg·ha−1 nitrogen with 25–30% content and a 40–80 day release period was applied, and the blending ratio was 0.4–0.7; and when planting potatoes and rapeseed for 3 years. The top three influencing factors were nitrogen rate, crop type, and average annual precipitation. In conclusion, MNF should comprehensively consider crops, regions, soil, and management. This study provides a scientific basis for optimizing slow-release nitrogen fertilizers and promoting the large-scale application of MNF in farmland. Full article
(This article belongs to the Special Issue Nutrient Management for Crop Production and Quality)
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21 pages, 4252 KiB  
Article
AnimalAI: An Open-Source Web Platform for Automated Animal Activity Index Calculation Using Interactive Deep Learning Segmentation
by Mahtab Saeidifar, Guoming Li, Lakshmish Macheeri Ramaswamy, Chongxiao Chen and Ehsan Asali
Animals 2025, 15(15), 2269; https://doi.org/10.3390/ani15152269 - 3 Aug 2025
Viewed by 175
Abstract
Monitoring the activity index of animals is crucial for assessing their welfare and behavior patterns. However, traditional methods for calculating the activity index, such as pixel intensity differencing of entire frames, are found to suffer from significant interference and noise, leading to inaccurate [...] Read more.
Monitoring the activity index of animals is crucial for assessing their welfare and behavior patterns. However, traditional methods for calculating the activity index, such as pixel intensity differencing of entire frames, are found to suffer from significant interference and noise, leading to inaccurate results. These classical approaches also do not support group or individual tracking in a user-friendly way, and no open-access platform exists for non-technical researchers. This study introduces an open-source web-based platform that allows researchers to calculate the activity index from top-view videos by selecting individual or group animals. It integrates Segment Anything Model2 (SAM2), a promptable deep learning segmentation model, to track animals without additional training or annotation. The platform accurately tracked Cobb 500 male broilers from weeks 1 to 7 with a 100% success rate, IoU of 92.21% ± 0.012, precision of 93.87% ± 0.019, recall of 98.15% ± 0.011, and F1 score of 95.94% ± 0.006, based on 1157 chickens. Statistical analysis showed that tracking 80% of birds in week 1, 60% in week 4, and 40% in week 7 was sufficient (r ≥ 0.90; p ≤ 0.048) to represent the group activity in respective ages. This platform offers a practical, accessible solution for activity tracking, supporting animal behavior analytics with minimal effort. Full article
(This article belongs to the Section Animal Welfare)
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23 pages, 2870 KiB  
Article
Bridge Tower Warning Method Based on Improved Multi-Rate Fusion Under Strong Wind Action
by Yan Shi, Yan Wang, Lu-Nan Wang, Wei-Nan Wang and Tao-Yuan Yang
Buildings 2025, 15(15), 2733; https://doi.org/10.3390/buildings15152733 - 2 Aug 2025
Viewed by 133
Abstract
The displacement of bridge towers is relatively large under strong wind action. Changes in tower displacement can reflect the usage status of the bridge towers. Therefore, it is necessary to conduct performance warning research on tower displacement under strong wind action. In this [...] Read more.
The displacement of bridge towers is relatively large under strong wind action. Changes in tower displacement can reflect the usage status of the bridge towers. Therefore, it is necessary to conduct performance warning research on tower displacement under strong wind action. In this paper, the triple standard deviation method, multiple linear regression method, and interpolation method are used to preprocess monitoring data with skipped points and missing anomalies. An improved multi-rate data fusion method, validated using simulated datasets, was applied to correct monitoring data at bridge tower tops. The fused data were used to feed predictive models and generate structural performance alerts. Spectral analysis confirmed that the fused displacement measurements achieve high precision by effectively merging the low-frequency GPS signal with the high-frequency accelerometer signal. Structural integrity monitoring of wind-loaded bridge towers used modeling residuals as alert triggers. The efficacy of this proactive monitoring strategy has been quantitatively validated through statistical evaluation of alarm accuracy rates. Full article
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19 pages, 2528 KiB  
Systematic Review
The Nexus Between Green Finance and Artificial Intelligence: A Systemic Bibliometric Analysis Based on Web of Science Database
by Katerina Fotova Čiković, Violeta Cvetkoska and Dinko Primorac
J. Risk Financial Manag. 2025, 18(8), 420; https://doi.org/10.3390/jrfm18080420 - 1 Aug 2025
Viewed by 274
Abstract
The intersection of green finance and artificial intelligence (AI) represents a rapidly emerging and high-impact research domain with the potential to reshape sustainable economic systems. This study presents a comprehensive bibliometric and network analysis aimed at mapping the scientific landscape, identifying research hotspots, [...] Read more.
The intersection of green finance and artificial intelligence (AI) represents a rapidly emerging and high-impact research domain with the potential to reshape sustainable economic systems. This study presents a comprehensive bibliometric and network analysis aimed at mapping the scientific landscape, identifying research hotspots, and highlighting methodological trends at this nexus. A dataset of 268 peer-reviewed publications (2014–June 2025) was retrieved from the Web of Science Core Collection, filtered by the Business Economics category. Analytical techniques employed include Bibliometrix in R, VOSviewer, and science mapping tools such as thematic mapping, trend topic analysis, co-citation networks, and co-occurrence clustering. Results indicate an annual growth rate of 53.31%, with China leading in both productivity and impact, followed by Vietnam and the United Kingdom. The most prolific affiliations and authors, primarily based in China, underscore a concentrated regional research output. The most relevant journals include Energy Economics and Finance Research Letters. Network visualizations identified 17 clusters, with focused analysis on the top three: (1) Emission, Health, and Environmental Risk, (2) Institutional and Technological Infrastructure, and (3) Green Innovation and Sustainable Urban Development. The methodological landscape is equally diverse, with top techniques including blockchain technology, large language models, convolutional neural networks, sentiment analysis, and structural equation modeling, demonstrating a blend of traditional econometrics and advanced AI. This study not only uncovers intellectual structures and thematic evolution but also identifies underdeveloped areas and proposes future research directions. These include dynamic topic modeling, regional case studies, and ethical frameworks for AI in sustainable finance. The findings provide a strategic foundation for advancing interdisciplinary collaboration and policy innovation in green AI–finance ecosystems. Full article
(This article belongs to the Special Issue Commercial Banking and FinTech in Emerging Economies)
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19 pages, 4365 KiB  
Article
Fecal Virome Transplantation Confirms Non-Bacterial Components (Virome and Metabolites) Participate in Fecal Microbiota Transplantation-Mediated Growth Performance Enhancement and Intestinal Development in Broilers with Spatial Heterogeneity
by Shuaihu Chen, Tingting Liu, Junyao Chen, Hong Shen and Jungang Wang
Microorganisms 2025, 13(8), 1795; https://doi.org/10.3390/microorganisms13081795 - 31 Jul 2025
Viewed by 228
Abstract
Fecal microbiota transplantation (FMT) promotes growth performance and intestinal development in yellow-feathered broilers, but whether the virome and metabolites contribute to its growth-promoting effect remains unclear. This study removed the microbiota from FMT filtrate using a 0.45 μm filter membrane, retaining the virome [...] Read more.
Fecal microbiota transplantation (FMT) promotes growth performance and intestinal development in yellow-feathered broilers, but whether the virome and metabolites contribute to its growth-promoting effect remains unclear. This study removed the microbiota from FMT filtrate using a 0.45 μm filter membrane, retaining the virome and metabolites to perform fecal virome transplantation (FVT), aiming to investigate its regulatory role in broiler growth. Healthy yellow-feathered broilers with high body weights (top 10% of the population) were used as FVT donors. Ninety-six 8-day-old healthy male yellow-feathered broilers (95.67 ± 3.31 g) served as FVT recipients. Recipient chickens were randomly assigned to a control group and an FVT group. The control group was gavaged with 0.5 mL of normal saline daily, while the FVT group was gavaged with 0.5 mL of FVT solution daily. Growth performance, immune and antioxidant capacity, intestinal development and related gene expression, and microbial diversity were measured. The results showed that FVT improved the feed utilization rate of broilers (the feed conversion ratio decreased by 3%; p < 0.05), significantly increased jejunal length (21%), villus height (69%), and crypt depth (84%) (p < 0.05), and regulated the jejunal barrier: insulin-like growth factor-1 (IGF-1) (2.5 times) and Mucin 2 (MUC2) (63 times) were significantly upregulated (p < 0.05). FVT increased the abundance of beneficial bacteria Lactobacillales. However, negative effects were also observed: Immunoglobulin A (IgA), Immunoglobulin G (IgG), Immunoglobulin M (IgM), Interleukin-1 beta (IL-1β), Interleukin-6 (IL-6), Tumor Necrosis Factor-alpha (TNF-α), and Interferon-gamma (IFN-γ) in broilers were significantly upregulated (p < 0.05), indicating immune system overactivation. Duodenal barrier-related genes Mucin 2 (MUC2), Occludin (OCLN), Claudin (CLDN1), and metabolism-related genes solute carrier family 5 member 1 (SLC5A1) and solute carrier family 7 member 9 (SLC7A9) were significantly downregulated (p < 0.05). The results of this trial demonstrate that, besides the microbiota, the gut virome and metabolites are also functional components contributing to the growth-promoting effect of FMT. The differential responses in the duodenum and jejunum reveal spatial heterogeneity and dual effects of FVT on the intestine. The negative effects limit the application of FMT/FVT. Identifying the primary functional components of FMT/FVT to develop safe and targeted microbial preparations is one potential solution. Full article
(This article belongs to the Section Veterinary Microbiology)
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20 pages, 2714 KiB  
Article
Diagnosing Bias and Instability in LLM Evaluation: A Scalable Pairwise Meta-Evaluator
by Catalin Anghel, Andreea Alexandra Anghel, Emilia Pecheanu, Adina Cocu, Adrian Istrate and Constantin Adrian Andrei
Information 2025, 16(8), 652; https://doi.org/10.3390/info16080652 - 31 Jul 2025
Viewed by 275
Abstract
The evaluation of large language models (LLMs) increasingly relies on other LLMs acting as automated judges. While this approach offers scalability and efficiency, it raises serious concerns regarding evaluator reliability, positional bias, and ranking stability. This paper presents a scalable framework for diagnosing [...] Read more.
The evaluation of large language models (LLMs) increasingly relies on other LLMs acting as automated judges. While this approach offers scalability and efficiency, it raises serious concerns regarding evaluator reliability, positional bias, and ranking stability. This paper presents a scalable framework for diagnosing positional bias and instability in LLM-based evaluation by using controlled pairwise comparisons judged by multiple independent language models. The system supports mirrored comparisons with reversed response order, prompt injection, and surface-level perturbations (e.g., paraphrasing, lexical noise), enabling fine-grained analysis of evaluator consistency and verdict robustness. Over 3600 pairwise comparisons were conducted across five instruction-tuned open-weight models using ten open-ended prompts. The top-performing model (gemma:7b-instruct) achieved a 66.5% win rate. Evaluator agreement was uniformly high, with 100% consistency across judges, yet 48.4% of verdicts reversed under mirrored response order, indicating strong positional bias. Kendall’s Tau analysis further showed that local model rankings varied substantially across prompts, suggesting that semantic context influences evaluator judgment. All evaluation traces were stored in a graph database (Neo4j), enabling structured querying and longitudinal analysis. The proposed framework provides not only a diagnostic lens for benchmarking models but also a blueprint for fairer and more interpretable LLM-based evaluation. These findings underscore the need for structure-aware, perturbation-resilient evaluation pipelines when benchmarking LLMs. The proposed framework offers a reproducible path for diagnosing evaluator bias and ranking instability in open-ended language tasks. Future work will apply this methodology to educational assessment tasks, using rubric-based scoring and graph-based traceability to evaluate student responses in technical domains. Full article
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30 pages, 3319 KiB  
Article
A Pilot Study on Thermal Comfort in Young Adults: Context-Aware Classification Using Machine Learning and Multimodal Sensors
by Bibars Amangeldy, Timur Imankulov, Nurdaulet Tasmurzayev, Serik Aibagarov, Nurtugan Azatbekuly, Gulmira Dikhanbayeva and Aksultan Mukhanbet
Buildings 2025, 15(15), 2694; https://doi.org/10.3390/buildings15152694 - 30 Jul 2025
Viewed by 328
Abstract
While personal thermal comfort is critical for well-being and productivity, it is often overlooked by traditional building management systems that rely on uniform settings. Modern data-driven approaches often fail to capture the complex interactions between various data streams. This pilot study introduces a [...] Read more.
While personal thermal comfort is critical for well-being and productivity, it is often overlooked by traditional building management systems that rely on uniform settings. Modern data-driven approaches often fail to capture the complex interactions between various data streams. This pilot study introduces a high-accuracy, interpretable framework for thermal comfort classification, designed to identify the most significant predictors from a comprehensive suite of environmental, physiological, and anthropometric data in a controlled group of young adults. Initially, an XGBoost model using the full 24-feature dataset achieved the best performance at 91% accuracy. However, after using SHAP analysis to identify and select the most influential features, the performance of our ensemble models improved significantly; notably, a Random Forest model’s accuracy rose from 90% to 94%. Our analysis confirmed that for this homogeneous cohort, environmental parameters—specifically temperature, humidity, and CO2—were the dominant predictors of thermal comfort. The primary strength of this methodology lies in its ability to create a transparent pipeline that objectively identifies the most critical comfort drivers for a given population, forming a crucial evidence base for model design. The analysis also revealed that the predictive value of heart rate variability (HRV) diminished when richer physiological data, such as diastolic blood pressure, were included. For final validation, the optimized Random Forest model, using only the top 10 features, was tested on a hold-out set of 100 samples, achieving a final accuracy of 95% and an F1-score of 0.939, with all misclassifications occurring only between adjacent comfort levels. These findings establish a validated methodology for creating effective, context-aware comfort models that can be embedded into intelligent building management systems. Such adaptive systems enable a shift from static climate control to dynamic, user-centric environments, laying the critical groundwork for future personalized systems while enhancing occupant well-being and offering significant energy savings. Full article
(This article belongs to the Section Building Energy, Physics, Environment, and Systems)
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17 pages, 2601 KiB  
Article
Tree Selection of Vernicia montana in a Representative Orchard Cluster Within Southern Hunan Province, China: A Comprehensive Evaluation Approach
by Juntao Liu, Zhexiu Yu, Xihui Li, Ling Zhou, Ruihui Wang and Weihua Zhang
Plants 2025, 14(15), 2351; https://doi.org/10.3390/plants14152351 - 30 Jul 2025
Viewed by 318
Abstract
With the objective of identifying superior Vernicia montana trees grounded in phenotypic and agronomic traits, this study sought to develop and implement a comprehensive evaluation method which would provide a practical foundation for future clonal breeding initiatives. Using the Vernicia montana propagated from [...] Read more.
With the objective of identifying superior Vernicia montana trees grounded in phenotypic and agronomic traits, this study sought to develop and implement a comprehensive evaluation method which would provide a practical foundation for future clonal breeding initiatives. Using the Vernicia montana propagated from seedling forests grown in the Suxian District of Chenzhou City in southern Hunan Province, we conducted pre-selection, primary selection, and re-selection of Vernicia montana forest stands and took the nine trait indices of single-plant fruiting quantity, single-plant fruit yield, disease and pest resistance, fruit ripening consistency, fruit aggregation, fresh fruit single-fruit weight, fresh fruit seed rate, dry seed kernel rate, and seed kernel oil content rate as the optimal evaluation indexes and carried out cluster analysis and a comprehensive evaluation in order to establish a comprehensive evaluation system for superior Vernicia montana trees. The results demonstrated that a three-stage selection process—consisting of pre-selection, primary selection, and re-selection—was conducted using a comprehensive analytical approach. The pre-selection phase relied primarily on sensory evaluation criteria, including fruit count per plant, tree size, tree morphology, and fruit clustering characteristics. Through this rigorous screening process, 60 elite plants were selected. The primary selection was based on phenotypic traits, including single-plant fruit yield, pest and disease resistance, and uniformity of fruit ripening. From this stage, 36 plants were selected. Twenty plants were then selected for re-selection based on key performance indicators, such as fresh fruit weight, fresh fruit seed yield, dry seed kernel yield, and oil content of the seed kernel. Then the re-selected optimal trees were clustered and analyzed into three classes, with 10 plants in class I, 7 plants in class II, and 3 plants in class III. In class I, the top three superior plants exhibited outstanding performance across key traits: their fresh fruit weight per fruit, fresh fruit seed yield, dry seed yield, and seed kernel oil content reached 41.61 g, 42.80%, 62.42%, and 57.72%, respectively. Compared with other groups, these figures showed significant advantages: 1.17, 1.09, 1.12, and 1.02 times the average values of the 20 reselected superior trees; 1.22, 1.19, 1.20, and 1.08 times those of the 36 primary-selected superior trees; and 1.24, 1.25, 1.26, and 1.19 times those of the 60 pre-selected trees. Fruits counts per plant and the number of fruits produced per plant of the best three plants in class I were 885 and 23.38 kg, respectively, which were 1.13 and 1.18 times higher than the average of 20 re-selected superior trees, 1.25 and 1.30 times higher than the average of 36 first-selected superior trees, and 1.51 and 1.58 times higher than the average of 60 pre-selected superior trees. Class I superior trees, especially the top three genotypes, are suitable for use as mother trees for scion collection in grafting. The findings of this study provide a crucial foundation for developing superior clonal varieties of Vernicia montana through selective breeding. Full article
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25 pages, 2761 KiB  
Article
Leveraging Deep Learning, Grid Search, and Bayesian Networks to Predict Distant Recurrence of Breast Cancer
by Xia Jiang, Yijun Zhou, Alan Wells and Adam Brufsky
Cancers 2025, 17(15), 2515; https://doi.org/10.3390/cancers17152515 - 30 Jul 2025
Viewed by 292
Abstract
Background: Unlike most cancers, breast cancer poses a persistent risk of distant recurrence—often years after initial treatment—making long-term risk stratification uniquely challenging. Current tools fall short in predicting late metastatic events, particularly for early-stage patients. Methods: We present an interpretable machine [...] Read more.
Background: Unlike most cancers, breast cancer poses a persistent risk of distant recurrence—often years after initial treatment—making long-term risk stratification uniquely challenging. Current tools fall short in predicting late metastatic events, particularly for early-stage patients. Methods: We present an interpretable machine learning (ML) pipeline to predict distant recurrence-free survival at 5, 10, and 15 years, integrating Bayesian network-based causal feature selection, deep feed-forward neural network models (DNMs), and SHAP-based interpretation. Using electronic health record (EHR)-based clinical data from over 6000 patients, we first applied the Markov blanket and interactive risk factor learner (MBIL) to identify minimally sufficient predictor subsets. These were then used to train optimized DNM classifiers, with hyperparameters tuned via grid search and benchmarked against models from 10 traditional ML methods and models trained using all predictors. Results: Our best models achieved area under the curve (AUC) scores of 0.79, 0.83, and 0.89 for 5-, 10-, and 15-year predictions, respectively—substantially outperforming baselines. MBIL reduced input dimensionality by over 80% without sacrificing accuracy. Importantly, MBIL-selected features (e.g., nodal status, hormone receptor expression, tumor size) overlapped strongly with top SHAP contributors, reinforcing interpretability. Calibration plots further demonstrated close agreement between predicted probabilities and observed recurrence rates. The percentage performance improvement due to grid search ranged from 25.3% to 60%. Conclusions: This study demonstrates that combining causal selection, deep learning, and grid search improves prediction accuracy, transparency, and calibration for long-horizon breast cancer recurrence risk. The proposed framework is well-positioned for clinical use, especially to guide long-term follow-up and therapy decisions in early-stage patients. Full article
(This article belongs to the Special Issue AI-Based Applications in Cancers)
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8 pages, 192 KiB  
Brief Report
Accuracy and Safety of ChatGPT-3.5 in Assessing Over-the-Counter Medication Use During Pregnancy: A Descriptive Comparative Study
by Bernadette Cornelison, David R. Axon, Bryan Abbott, Carter Bishop, Cindy Jebara, Anjali Kumar and Kristen A. Root
Pharmacy 2025, 13(4), 104; https://doi.org/10.3390/pharmacy13040104 - 30 Jul 2025
Viewed by 495
Abstract
As artificial intelligence (AI) becomes increasingly utilized to perform tasks requiring human intelligence, patients who are pregnant may turn to AI for advice on over-the-counter (OTC) medications. However, medications used in pregnancy may pose profound safety concerns limited by data availability. This study [...] Read more.
As artificial intelligence (AI) becomes increasingly utilized to perform tasks requiring human intelligence, patients who are pregnant may turn to AI for advice on over-the-counter (OTC) medications. However, medications used in pregnancy may pose profound safety concerns limited by data availability. This study focuses on a chatbot’s ability to accurately provide information regarding OTC medications as it relates to patients that are pregnant. A prospective, descriptive design was used to compare the responses generated by the Chat Generative Pre-Trained Transformer 3.5 (ChatGPT-3.5) to the information provided by UpToDate®. Eighty-seven of the top pharmacist-recommended OTC drugs in the United States (U.S.) as identified by Pharmacy Times were assessed for safe use in pregnancy using ChatGPT-3.5. A piloted, standard prompt was input into ChatGPT-3.5, and the responses were recorded. Two groups independently rated the responses compared to UpToDate on their correctness, completeness, and safety using a 5-point Likert scale. After independent evaluations, the groups discussed the findings to reach a consensus, with a third independent investigator giving final ratings. For correctness, the median score was 5 (interquartile range [IQR]: 5–5). For completeness, the median score was 4 (IQR: 4–5). For safety, the median score was 5 (IQR: 5–5). Despite high overall scores, the safety errors in 9% of the evaluations (n = 8), including omissions that pose a risk of serious complications, currently renders the chatbot an unsafe standalone resource for this purpose. Full article
(This article belongs to the Special Issue AI Use in Pharmacy and Pharmacy Education)
21 pages, 8624 KiB  
Article
Comparison of GOES16 Data with the TRACER-ESCAPE Field Campaign Dataset for Convection Characterization: A Selection of Case Studies and Lessons Learnt
by Aida Galfione, Alessandro Battaglia, Mariko Oue, Elsa Cattani and Pavlos Kollias
Remote Sens. 2025, 17(15), 2621; https://doi.org/10.3390/rs17152621 - 28 Jul 2025
Viewed by 256
Abstract
Convective updrafts are one of the main characteristics of convective clouds, responsible for the convective mass flux and the redistribution of energy and condensate in the atmosphere. During the early stages of their lifecycle, convective clouds experience rapid cloud-top ascent manifested by a [...] Read more.
Convective updrafts are one of the main characteristics of convective clouds, responsible for the convective mass flux and the redistribution of energy and condensate in the atmosphere. During the early stages of their lifecycle, convective clouds experience rapid cloud-top ascent manifested by a decrease in the geostationary IR brightness temperature (TBIR). Under the assumption that the convective cloud top behaves like a black body, the ascent rate of the convective cloud top can be estimated as (TBIRt), and it can be used to infer the near cloud-top convective updraft. The temporal resolution of the geostationary IR measurements and non-uniform beam-filling effects can influence the convective updraft estimation. However, the main shortcoming until today was the lack of independent verification of the strength of the convective updraft. Here, Doppler radar observations from the ESCAPE and TRACER field experiments provide independent estimates of the convective updraft velocity at higher spatiotemporal resolution throughout the convective core column and can be used to evaluate the updraft velocity estimates from the IR cooling rate for limited samples. Isolated convective cells were tracked with dedicated radar (RHIs and PPIs) scans throughout their lifecycle. Radial Doppler velocity measurements near the convective cloud top are used to provide estimates of convective updrafts. These data are compared with the geostationary IR and VIS channels (from the GOES satellite) to characterize the convection evolution and lifecycle based on cloud-top cooling rates. Full article
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