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17 pages, 1416 KiB  
Article
Humic Substances Promote the Activity of Enzymes Related to Plant Resistance
by Rakiely M. Silva, Fábio L. Olivares, Lázaro E. P. Peres, Etelvino H. Novotny and Luciano P. Canellas
Agriculture 2025, 15(15), 1688; https://doi.org/10.3390/agriculture15151688 - 5 Aug 2025
Abstract
The extensive use of pesticides has significant implications for public health and the environment. Breeding crop plants is the most effective and environmentally friendly approach to improve the plants’ resistance. However, it is time-consuming and costly, and it is sometimes difficult to achieve [...] Read more.
The extensive use of pesticides has significant implications for public health and the environment. Breeding crop plants is the most effective and environmentally friendly approach to improve the plants’ resistance. However, it is time-consuming and costly, and it is sometimes difficult to achieve satisfactory results. Plants induce defense responses to natural elicitors by interpreting multiple genes that encode proteins, including enzymes, secondary metabolites, and pathogenesis-related (PR) proteins. These responses characterize systemic acquired resistance. Humic substances trigger positive local and systemic physiological responses through a complex network of hormone-like signaling pathways and can be used to induce biotic and abiotic stress resistance. This study aimed to assess the effect of humic substances on the activity of phenylalanine ammonia-lyase (PAL), peroxidase (POX), and β-1,3-glucanase (GLU) used as a resistance marker in various plant species, including orange, coffee, sugarcane, soybeans, maize, and tomato. Seedlings were treated with a dilute aqueous suspension of humic substances (4 mM C L−1) as a foliar spray or left untreated (control). Leaf tissues were collected for enzyme assessment two days later. Humic substances significantly promoted the systemic acquired resistance marker activities compared to the control in all independent assays. Overall, all enzymes studied in this work, PAL, GLUC, and POX, showed an increase in activity by 133%, 181%, and 149%, respectively. Among the crops studied, citrus and coffee achieved the highest activity increase in all enzymes, except for POX in coffee, which showed a decrease of 29% compared to the control. GLUC exhibited the highest response to HS treatment, the enzyme most prominently involved in increasing enzymatic activity in all crops. Plants can improve their resistance to pathogens through the exogenous application of HSs as this promotes the activity of enzymes related to plant resistance. Finally, we consider the potential use of humic substances as a natural chemical priming agent to boost plant resistance in agriculture Full article
(This article belongs to the Special Issue Biocontrol Agents for Plant Pest Management)
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20 pages, 2360 KiB  
Article
Enhanced Ammonium Removal from Wastewater Using FAU-Type and BEA-Type Zeolites and Potential Application on Seedling Growth: Towards Closing the Waste-to-Resource Cycle
by Matiara S. C. Amaral, Marcella A. da Silva, Giovanna da S. Cidade, Diêgo N. Faria, Daniel F. Cipriano, Jair C. C. Freitas, Fabiana Soares dos Santos, Mendelssolm K. Pietre and André M. dos Santos
Processes 2025, 13(8), 2426; https://doi.org/10.3390/pr13082426 - 31 Jul 2025
Viewed by 327
Abstract
This work focuses on the effectiveness of removing ammonium from real municipal wastewater using synthetic faujasite (FAU-type) and β (BEA-type) zeolites and a commercial β (BEA-type) sample. The results demonstrated that synthetic samples presented enhanced performance on ammonium removal in comparison with commercial [...] Read more.
This work focuses on the effectiveness of removing ammonium from real municipal wastewater using synthetic faujasite (FAU-type) and β (BEA-type) zeolites and a commercial β (BEA-type) sample. The results demonstrated that synthetic samples presented enhanced performance on ammonium removal in comparison with commercial zeolite due to higher Al content and larger specific surface area, promoting better accessibility to active adsorption sites of the adsorbents. Synthetic FAU-type and BEA-type zeolites achieved a maximum adsorption capacity of 28.87 and 12.62 mg·g−1, respectively, outperforming commercial BEA-type zeolite (6.50 mg·g−1). Adsorption assays, associated with kinetic studies and adsorption isotherms, were better fitted using the pseudo-second order model and the Langmuir model, respectively, suggesting that chemisorption, involving ion exchange, and monolayer formation at the zeolite surface, was the main mechanism involved in the NH4+ adsorption process. After ammonium adsorption, the NH4+-loaded zeolite samples were used to stimulate the growth of tomato seedlings; the results revealed a change in the biomass production for seedlings grown in vitro, especially when the BEA_C_NH4 sample was employed, leading to a 15% increase in the fresh mass in comparison with the control sample. In contrast, the excess of ammonium adsorbed over the BEA_S_NH4 and FAU_NH4 samples probably caused a toxic effect on seedling growth. The elemental analysis results supported the hypothesis that the presence of NH4+-loaded zeolite into the culture medium was important for the release of nitrogen. The obtained results show then that the investigated zeolites are promising both as efficient adsorbents to mitigate the environmental impact of ammonium-contaminated water bodies and as nitrogen-rich fertilizers. Full article
(This article belongs to the Special Issue Novel Applications of Zeolites in Adsorption Processes)
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27 pages, 4228 KiB  
Article
Whole-Genome Analysis of Halomonas sp. H5 Revealed Multiple Functional Genes Relevant to Tomato Growth Promotion, Plant Salt Tolerance, and Rhizosphere Soil Microecology Regulation
by Yan Li, Meiying Gu, Wanli Xu, Jing Zhu, Min Chu, Qiyong Tang, Yuanyang Yi, Lijuan Zhang, Pan Li, Yunshu Zhang, Osman Ghenijan, Zhidong Zhang and Ning Li
Microorganisms 2025, 13(8), 1781; https://doi.org/10.3390/microorganisms13081781 - 30 Jul 2025
Viewed by 248
Abstract
Soil salinity adversely affects crop growth and development, leading to reduced soil fertility and agricultural productivity. The indigenous salt-tolerant plant growth-promoting rhizobacteria (PGPR), as a sustainable microbial resource, do not only promote growth and alleviate salt stress, but also improve the soil microecology [...] Read more.
Soil salinity adversely affects crop growth and development, leading to reduced soil fertility and agricultural productivity. The indigenous salt-tolerant plant growth-promoting rhizobacteria (PGPR), as a sustainable microbial resource, do not only promote growth and alleviate salt stress, but also improve the soil microecology of crops. The strain H5 isolated from saline-alkali soil in Bachu of Xinjiang was studied through whole-genome analysis, functional annotation, and plant growth-promoting, salt-tolerant trait gene analysis. Phylogenetic tree analysis and 16S rDNA sequencing confirmed its classification within the genus Halomonas. Functional annotation revealed that the H5 genome harbored multiple functional gene clusters associated with plant growth promotion and salt tolerance, which were critically involved in key biological processes such as bacterial survival, nutrient acquisition, environmental adaptation, and plant growth promotion. The pot experiment under moderate salt stress demonstrated that seed inoculation with Halomonas sp. H5 not only significantly improved the agronomic traits of tomato seedlings, but also increased plant antioxidant enzyme activities under salt stress. Additionally, soil analysis revealed H5 treatment significantly decreased the total salt (9.33%) and electrical conductivity (8.09%), while significantly improving organic matter content (11.19%) and total nitrogen content (10.81%), respectively (p < 0.05). Inoculation of strain H5 induced taxonomic and functional shifts in the rhizosphere microbial community, increasing the relative abundance of microorganisms associated with plant growth-promoting and carbon and nitrogen cycles, and reduced the relative abundance of the genera Alternaria (15.14%) and Fusarium (9.76%), which are closely related to tomato diseases (p < 0.05). Overall, this strain exhibits significant potential in alleviating abiotic stress, enhancing growth, improving disease resistance, and optimizing soil microecological conditions in tomato plants. These results provide a valuable microbial resource for saline soil remediation and utilization. Full article
(This article belongs to the Section Plant Microbe Interactions)
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26 pages, 3318 KiB  
Article
Responses of Tomato Growth and Soil Environment Properties to Integrated Deficit Water-Biogas Slurry Application Under Indirect Subsurface Drip Irrigation
by Peng Xiang, Jian Zheng, Panpan Fan, Yan Wang and Fenyan Ma
Agriculture 2025, 15(15), 1601; https://doi.org/10.3390/agriculture15151601 - 25 Jul 2025
Viewed by 315
Abstract
To explore the feasibility of integrated deficit water-biogas slurry irrigation under indirect subsurface drip irrigation, three deficit irrigation levels (60%FC, 70%FC, and 80%FC; FC represents field capacity) were established during the three growth stages of tomatoes. The results indicated that biogas slurry irrigation [...] Read more.
To explore the feasibility of integrated deficit water-biogas slurry irrigation under indirect subsurface drip irrigation, three deficit irrigation levels (60%FC, 70%FC, and 80%FC; FC represents field capacity) were established during the three growth stages of tomatoes. The results indicated that biogas slurry irrigation treatments increased the soil organic matter content in the root zone and water use efficiency (WUE) and reduced soil pH. As the degree of deficit increased, the plant height and stem diameter of tomatoes decreased significantly (p < 0.05), particularly during the seedling and flowering-fruiting stages. A mild deficit during the seedling stage was beneficial for subsequent plant growth, yielding maximum leaf area (6871.42 cm2 plant−1). Moderate deficit treatment at the seedling stage maximized yield, which was 19.79% higher than the control treatment in 2020 and 19.22% higher in 2021. The WUE of severe deficit treatment at the maturity stage increased by 26.6% (2020) and 31.04% (2021) compared to the control treatment. Comprehensive evaluation using TOPSIS combined with the weighted method revealed that severe deficit treatment at the maturity stage provided the best comprehensive benefits for tomatoes. In summary, deficit irrigation at different growth stages positively influenced tomato growth, quality, and soil environment in response to water-biogas slurry irrigation. Full article
(This article belongs to the Section Agricultural Water Management)
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16 pages, 1613 KiB  
Article
Allelopathic Effect of Salvia pratensis L. on Germination and Growth of Crops
by Marija Ravlić, Renata Baličević, Miroslav Lisjak, Željka Vinković, Jelena Ravlić, Ana Županić and Brankica Svitlica
Crops 2025, 5(4), 45; https://doi.org/10.3390/crops5040045 - 22 Jul 2025
Viewed by 226
Abstract
Salvia pratensis L. is a valuable medicinal plant rich in bioactive compounds, yet its allelopathic potential remains underexplored. This study evaluated allelopathic effects and total phenolic (TPC) and flavonoid (TFC) contents of water extracts from the dry aboveground biomass of S. pratensis. [...] Read more.
Salvia pratensis L. is a valuable medicinal plant rich in bioactive compounds, yet its allelopathic potential remains underexplored. This study evaluated allelopathic effects and total phenolic (TPC) and flavonoid (TFC) contents of water extracts from the dry aboveground biomass of S. pratensis. To assess their selectivity and potential application in sustainable weed management, extracts at five different concentrations were tested on the germination and early growth of lettuce, radish, tomato, and carrot. The results demonstrated that the phytotoxic effects of S. pratensis extracts were both concentration- and species-dependent. Higher extract concentrations significantly inhibited germination and seedling growth, while lower concentrations of extracts stimulated shoot elongation by up to 30% compared to the control. Phytochemical analysis revealed that S. pratensis extracts contain notable TPC and TFC contents, with their concentrations increasing consistently with the extract concentration. Correlation analysis showed that higher TPC and TFC contents were strongly negatively correlated with germination and seedling growth parameters. Radish exhibited the highest sensitivity to the extracts, while lettuce was the most tolerant. Further research under field conditions is needed to assess the efficacy, selectivity, and practical potential of S. pratensis extracts in sustainable crop production systems. Full article
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30 pages, 4836 KiB  
Article
Evaluation of Stress-Tolerant Serratia and Enterobacter as PGPR for Nutrient Solubilization and Dose-Dependent Bioformulation to Enhance Tomato Seedlings
by Indu Bhardwaj, Vijay Kumar, Somvir Singh, Arti Jamwal Sharma, Shikha Kumari, Nidhi Bhardwaj, Kanika Dulta, Lukas Peter, Richa Verma, Nitesh Kumar, Yogesh K. Ahlawat, Anurag Malik, Mohammad K. Okla, Rosa Porcel, José M. Mulet and Karthikeyan Jayabalan
Plants 2025, 14(14), 2154; https://doi.org/10.3390/plants14142154 - 13 Jul 2025
Viewed by 488
Abstract
Plant growth-promoting rhizobacteria (PGPR) are eco-friendly and sustainable options for agrochemicals, particularly for enhancing crop productivity under stress conditions. The present research aims to isolate and characterize native PGPR from tomato rhizospheric soil and to evaluate their effectiveness as a dose-dependent response to [...] Read more.
Plant growth-promoting rhizobacteria (PGPR) are eco-friendly and sustainable options for agrochemicals, particularly for enhancing crop productivity under stress conditions. The present research aims to isolate and characterize native PGPR from tomato rhizospheric soil and to evaluate their effectiveness as a dose-dependent response to enhance the growth of tomato seedlings. Out of 112 isolates, 10 bacterial strains were selected based on key PGPR traits, including indole-3-acetic acid (IAA), ammonia production, hydrogen cyanide (HCN), exopolysaccharide (EPS) synthesis, hydrolytic enzyme activity, potassium solubilization, antifungal activity against Fusarium oxysporum, and tolerance to pH and heat stress. Molecular identification via 16S rRNA gene sequencing confirmed that these isolates belong to the genera Serratia and Enterobacter. S. marcescens So-1 and Enterobacter sp. So-12 produced the highest levels of IAA (2.6–24.1 µg/mL). In vitro tomato seed germination tests using bacterial suspensions at three concentrations (106, 107, and 108 CFU/mL) showed dose-dependent improvements, with T1 increasing germination up to 108.3% compared to the control. In polyhouse trials using cocopeat formulations, seedling growth improved noticeably. T2 increased the root length (28.3 ± 2.98 cm) by over 1560%, and the shoot length (35.7 ± 0.57 cm) increased by 55% against the control, whose root length is 1.7 ± 0.47. The chlorophyll amount of the treated leaves further showed significant results over the control. Collectively, these findings suggest that using native PGPR in a dose-dependent way can help tomato seedlings grow better and promote more sustainable crop production. Full article
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19 pages, 26828 KiB  
Article
Synergistic Effects of Elevated CO2 and Enhanced Light Intensity on Growth Dynamics, Stomatal Phenomics, Leaf Anatomy, and Photosynthetic Performance in Tomato Seedlings
by Tonghua Pan, Wenya Zhang, Wentao Du, Bingyan Fu, Xiaoting Zhou, Kai Cao, Encai Bao, Yunlong Wang and Gaoqiang Lv
Horticulturae 2025, 11(7), 760; https://doi.org/10.3390/horticulturae11070760 - 1 Jul 2025
Viewed by 357
Abstract
Elevated [CO2] enhances light interception and carboxylation efficiency in plants. The combined effects of [CO2] and photosynthetic photon flux density (PPFD) on stomatal morphology, leaf anatomy, and photosynthetic capacity in tomato seedlings remain unclear. This study subjected tomato seedlings [...] Read more.
Elevated [CO2] enhances light interception and carboxylation efficiency in plants. The combined effects of [CO2] and photosynthetic photon flux density (PPFD) on stomatal morphology, leaf anatomy, and photosynthetic capacity in tomato seedlings remain unclear. This study subjected tomato seedlings (Solanum lycopersicum Mill. cv. Jingpeng No.1) to two [CO2] (ambient [a[CO2], 400 µmol·mol−1] and enriched [e[CO2], 800 µmol·mol−1]) and three PPFD levels (L; low[Ll: 200 µmol·m−2·s−1], moderate[Lm: 300 µmol·m−2·s−1], and high[Lh: 400 µmol·m−2·s−1]) to assess their interactive impacts. Results showed that e[CO2] and increased PPFD synergistically improved relative growth rate and net assimilation rate while reducing specific leaf area and leaf area ratio. Notably, e[CO2] decreased stomatal aperture (−13.81%) and density (−27.76%), whereas elevated PPFD promoted stomatal morphological adjustments. Additionally, Leaf thickness increased by 72.98% under e[CO2], with Lm and Lh enhancing this by 10.79% and 41.50% compared to Ll. Furthermore, photosynthetic performance under e[CO2] was further evidenced by improved chlorophyll fluorescence parameters (excluding non-photochemical quenching). While both e[CO2] and increased PPFD Photosynthetic performance under e[CO2] was further evidenced by improved chlorophyll fluorescence parameters (excluding non-photochemical quenching). Moreover, e[CO2]-Lh treatment maximized total dry mass and seedling health index. Correlation analysis indicated that synergistic optimization of stomatal traits and leaf structure under a combination of e[CO2] and increased PPFD enhanced light harvesting and CO2 diffusion, thereby promoting carbon assimilation. These findings highlight e[CO2]-Lh as an optimal strategy for tomato seedling growth, providing empirical guidance for precision CO2 fertilization and light management in controlled cultivation. Full article
(This article belongs to the Special Issue Latest Advances in Horticulture Production Equipment and Technology)
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15 pages, 621 KiB  
Article
Yield and Quality Response of Indeterminate Tomatoes to Combined Growing Methods and Rootstock Cultivars
by Mampe E. Ndlovu, Puffy Soundy, Jacob J. De Klerk and Martin M. Maboko
Horticulturae 2025, 11(7), 758; https://doi.org/10.3390/horticulturae11070758 - 1 Jul 2025
Viewed by 329
Abstract
Limited comparative research exists on evaluating the performance of tomato rootstocks under different growing methods, resulting in growers facing challenges when deciding which rootstock and growing method to use for improved yield. The effect of growing methods (scion of a single stem or [...] Read more.
Limited comparative research exists on evaluating the performance of tomato rootstocks under different growing methods, resulting in growers facing challenges when deciding which rootstock and growing method to use for improved yield. The effect of growing methods (scion of a single stem or double stems and non-grafted plant as the control) and rootstock cultivars (Goldbac, SVTX6258, and Booster) on the yield and quality of tomatoes grown in a plastic tunnel and a shade net structure was investigated. The splice grafting method was followed. In a plastic tunnel experiment, grafting and rootstock cultivar did not significantly affect the total soluble solids (TSS), pH, and electrical conductivity (EC) of the tomato juice, as well as percentage weight loss, yield, and fruit firmness. However, the Booster rootstock with a scion of 2 stems had high fruit Mg, K, P, and Fe contents, while the Goldbac rootstock with a scion of 1 stem and 2 stems had high fruit Ca and Fe contents compared to other treatments. The Goldbac and Booster rootstocks grafted to a scion of 2 stems had a high marketable yield. In a shade net experiment, the Booster rootstock with a scion of 2 stems had a high early harvest and total yield of tomatoes, followed by the Goldbac rootstock with a scion of 2 stems. Higher incidences of fruit cracking were noticed on the Booster rootstock grafted with a scion of a single stem. Generally, grafted plants on Booster and Goldbac had improved Mg, K, and P contents, unlike SVTX6258 with a scion of 1 stem. The Booster rootstock with a scion of 2 stems had significantly higher Mg, K, and P contents, while the sodium (Na) fruit content was high on the SVTX6258 rootstock with a scion of 1 stem. Grafting did not significantly affect fruit physiological disorders, weight loss, and TSS, or pH and EC of tomato juice. Grafting with a scion of two stems at the seedling stage significantly improved the tomato fruit mineral content and the total and marketable yield in a plastic tunnel and a shade net structure. Full article
(This article belongs to the Section Vegetable Production Systems)
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19 pages, 7296 KiB  
Article
The Impact of Fulvic Acid on the Growth Physiology, Yield, and Quality of Tomatoes Under Drought Conditions
by Hongxia Song, Weilong Zhu, Ziqing Guo, Tianyue Song, Jiayu Wang, Chongzhen Gao, Hongtao Zhang and Ruixue Shen
Agronomy 2025, 15(7), 1528; https://doi.org/10.3390/agronomy15071528 - 24 Jun 2025
Viewed by 487
Abstract
Increased global drought severity threatens crop yield and quality. Fulvic acid (FA), a humic acid compound, enhances crop stress tolerance. This study investigated FA application on drought-stressed tomato ‘Provence’ during the seedling and fruiting stages. Seedling-stage drought severely inhibited growth, physiology, biochemistry, and [...] Read more.
Increased global drought severity threatens crop yield and quality. Fulvic acid (FA), a humic acid compound, enhances crop stress tolerance. This study investigated FA application on drought-stressed tomato ‘Provence’ during the seedling and fruiting stages. Seedling-stage drought severely inhibited growth, physiology, biochemistry, and photosynthesis, reducing seedling quality. Subsequent fruiting-stage drought further significantly decreased photosynthetic efficiency and assimilate synthesis, drastically lowering fruit yield and quality. FA application mitigated drought damage, with 400 mg·L−1 being optimal. At this concentration, under seedling drought, Seedling strength index (Si), Photosynthetic efficiency (Pn), and Instantaneous water use efficiency (IWUE) increased significantly by 76.54%, 67.46%, and 36.97%, respectively, with no adverse morphological effects by flowering. Post-drought FA spraying later significantly enhanced leaf photosynthetic enzyme activity and WUE (by 89.16%, 98.48%, 42.20%, and 40%), boosting Pn, promoting assimilate accumulation and transport to fruits. This resulted in significantly improved fruit yield and comprehensive quality. In conclusion, spraying 400 mg·L−1 FA significantly enhances tomato drought tolerance and water use efficiency in arid/semi-arid regions, offering an effective strategy for saving irrigation water and improving crop productivity in water-scarce areas. Full article
(This article belongs to the Section Horticultural and Floricultural Crops)
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16 pages, 1751 KiB  
Article
Enhancement of Tomato Growth Through Rhizobacteria and Biocontrol of Associated Diseases
by Hasna El hjouji, Redouan Qessaoui, Salahddine Chafiki, El Hassan Mayad, Hafsa Houmairi, Khadija Dari, Bouchaib Bencharki and Hinde Aassila
Life 2025, 15(7), 997; https://doi.org/10.3390/life15070997 - 23 Jun 2025
Viewed by 552
Abstract
The purpose of this study was to investigate the growth-promoting effects of four rhizobacterial isolates (RS60, RS65, RS46, and RP6) isolated from the tomato rhizosphere. These isolates were screened for key plant growth-promoting rhizobacteria (PGPR) mechanisms, including ammonia production, nitrogen fixation, phosphate solubilization, [...] Read more.
The purpose of this study was to investigate the growth-promoting effects of four rhizobacterial isolates (RS60, RS65, RS46, and RP6) isolated from the tomato rhizosphere. These isolates were screened for key plant growth-promoting rhizobacteria (PGPR) mechanisms, including ammonia production, nitrogen fixation, phosphate solubilization, indole-3-acetic acid (IAA) production, and siderophore synthesis. Their potential to enhance seed germination and tomato plant growth was investigated in controlled and greenhouse conditions. Four isolates exhibited multiple PGPR attributes, notably IAA and ammonia production as well as phosphate solubilization. The results revealed that these strains significantly enhanced tomato seed germination and shoot growth in vitro, with RS65 showing the highest germination rate (70%). However, no significant differences in early seedling responses were observed under greenhouse conditions when compared to the control. Thirty days after inoculation, greenhouse results revealed that the four studied strains significantly increased growth metrics including shoot length, number of leaves, collar diameter, and dry weight. The isolate RP6 showed a significant effect on the growth of the plant, with an average shoot length of 34.40 cm and nine leaves per plant. In vitro antagonism assays demonstrated that isolates RS60, RS65, and RP6 effectively inhibited the growth of Botrytis cinerea, Alternaria alternata, and Oidium lycopersici, with inhibition rates exceeding 65%. These antagonistic activities were linked to the production of hydrolytic enzymes (chitinase, cellulase, pectinase, protease), siderophores, and hydrogen cyanide (HCN). Molecular identification through 16S rRNA gene sequencing confirmed the isolates as Bacillus cereus (RS60), Bacillus pumilus (RS46), Bacillus amyloliquefaciens (RP6), and Bacillus velezensis (RS65), each showing over 97% sequence similarity with reference strains. These findings underscore the potential of the selected Bacillus spp. as promising biofertilizers and biocontrol agents for sustainable tomato cultivation and support their inclusion in integrated disease and nutrient management strategies. Full article
(This article belongs to the Special Issue Plant–Soil Interactions Under Global Change)
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20 pages, 1295 KiB  
Article
Physiological, Chemical and Metabolite Profiling of Pectobacterium carotovorum-Inoculated Tomato Plants Grown in Nutrient-Amended Soils
by Sandra Maluleke, Udoka Vitus Ogugua, Njabulo Mdluli, Ntakadzeni Edwin Madala and Khayalethu Ntushelo
Plants 2025, 14(12), 1876; https://doi.org/10.3390/plants14121876 - 18 Jun 2025
Viewed by 413
Abstract
This study evaluated the effects of a plant pathogenic bacterium Pectobacterium carotovorum strain BD163 inoculation and nutrient solution (CaCO3 (2 mM), NaCl (1 mM) and K2Cr2O7 (0.001 mM)) on the growth, photosynthesis, nutrient uptake and metabolomics of [...] Read more.
This study evaluated the effects of a plant pathogenic bacterium Pectobacterium carotovorum strain BD163 inoculation and nutrient solution (CaCO3 (2 mM), NaCl (1 mM) and K2Cr2O7 (0.001 mM)) on the growth, photosynthesis, nutrient uptake and metabolomics of tomato seedlings. The experiment had four experimental treatments (1. solution + BD163 inoculation, 2. solution alone, 3. BD163 inoculation, 4. control). Plant growth and photosynthesis responses were minimal, and differences in nutrient assimilation and metabolite profiles were clear-cut. Of the photosynthesis parameters, only water use efficiency was impacted; it was higher in the bacterium-only treatment and unchanged in the other treatments. The quantities of boron, bismuth and nickel were affected, accumulating mostly in the “solution + BD163 inoculation” experimental set. Principal component analysis of metabolomics data separated the treatments into three groupings; group 1 was the double treatment, group 2 was the nutrient solution treatment and, finally, group 3 was the P. carotovorum and control treatments. Correlation analysis of the data showed an assumed interdependence of several plant factors. The authors concluded that the interaction between the bacterium, the plant and the nutrient solution is complex and more pronounced at the chemical and metabolite level than at the growth and photosynthesis level. Full article
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17 pages, 2887 KiB  
Article
Intermittent Blue Light Supplementation Affected Carbohydrate Accumulation and Sugar Metabolism in Red-Light-Grown Tomato Seedlings
by Xiangyu Gao, Lingzhi Li, Wenzhong Guo, Yifan Zhai, Xiaoming Wei and Xiaoli Chen
Horticulturae 2025, 11(6), 700; https://doi.org/10.3390/horticulturae11060700 - 17 Jun 2025
Viewed by 677
Abstract
According to previous studies, dynamic light regimes might enhance seedling development, survival rates, or economic efficiency in factory-based seedling production systems compared to continuous red and blue light irradiation. However, there have been few studies revealing the effects of discontinuous red and blue [...] Read more.
According to previous studies, dynamic light regimes might enhance seedling development, survival rates, or economic efficiency in factory-based seedling production systems compared to continuous red and blue light irradiation. However, there have been few studies revealing the effects of discontinuous red and blue light on the carbohydrate accumulation and metabolism of tomato seedlings. Therefore, we planted tomato seedlings in an artificial light plant factory under a red background light with intermittent blue light intervention, namely R (as the control), R/RB32, R/RB40, R/RB64, and R/RB80 at an equal daily light integral. The growth, carbohydrate accumulation, and sugar metabolism were analyzed to investigate the effects of dynamic lighting modes on tomato seedlings. The results demonstrated the following: (1) Pure red light induced spindling of tomato seedlings, while intermittent blue light treatments enhanced stem thickness, leaf number, and leaf area, resulting in greater biomass accumulation. Among these treatments, the highest antioxidant enzyme activity and the lowest reactive oxygen species (ROS) content, accompanied by the highest biomass, were all observed in tomato seedlings subjected to R/RB80 (intermittent supplementation of 80 μmol·m−2·s−1 blue light under red light background). (2) The carbohydrate accumulation in tomato seedlings was increased under all treatments relative to the control. The sucrose content, enzyme activity, and gene expression level of sucrose phosphate synthase (SPS) were all up-regulated in tomato leaves treated with blue light irradiation compared with pure R. In addition, the highest soluble sugar content, along with the peak SPS activity and gene expression, was observed under the R/RB80 treatment. Meanwhile, the lowest fructose content accompanied by the lowest activity and gene expression of sucrose synthase (SS) were observed in tomato leaves treated with R/RB32. This implies that blue light supplementation may regulate sugar accumulation by modulating the activity or expression of enzymes involved in sucrose metabolism. (3) Moreover, shoot biomass, enzyme activity, and expression level of SPS were all found to increase with the increase in supplementary blue light intensity, indicating that short-duration high-intensity blue light was more effective in promoting carbohydrate accumulation in tomato seedlings than long-term low-intensity blue light based on the equal DLI. Full article
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24 pages, 6585 KiB  
Article
Genome Editing of the NF-YA8 Gene Modifies Tomato Plant Architecture and Fruit Traits
by Nestor Petrou, Nikoleta Tsigarida and Zoe Hilioti
Plants 2025, 14(12), 1826; https://doi.org/10.3390/plants14121826 - 13 Jun 2025
Viewed by 685
Abstract
Genome editing has revolutionized plant science, providing an unprecedented ability to precisely manipulate plant genomes. For this study, genome editing was utilized to target and modify the NF-YA8 transcription factor (TF) in tomato plants (Solanum lycopersicum L. var. Heinz 1706). The primary [...] Read more.
Genome editing has revolutionized plant science, providing an unprecedented ability to precisely manipulate plant genomes. For this study, genome editing was utilized to target and modify the NF-YA8 transcription factor (TF) in tomato plants (Solanum lycopersicum L. var. Heinz 1706). The primary objective of this research was to introduce targeted mutations in a non-transgenic manner to the NF-YA8 gene, which encodes the alpha subunit of the Nuclear Factor-Y (NF-Y) heterotrimeric TF, and explore its potential for developing new and improved tomato varieties. Through the transient expression of custom-engineered zinc finger nucleases (ZFNs) in tomato seeds, mutations were successfully introduced in the target gene. The recovered mutant NF-YA8 coding sequences showed a significant level of similarity to the wild type, with a range of 86.9% to 98.21%. Genotyping M2 lines revealed monogenic mutations at or near the intended target site. Phenotypic changes were also evident in both vegetative and reproductive stages of plants. The research revealed that NF-YA8 functions as a high-level regulator, orchestrating a developmental cascade that influences key agronomic traits throughout the plant’s life cycle, including cotyledon development, stem architecture, inflorescence architecture, flowering time, and fruit size and shape. Full article
(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
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19 pages, 2386 KiB  
Article
Melatonin Improves Salt Tolerance in Tomato Seedlings by Enhancing Photosystem II Functionality and Calvin Cycle Activity
by Xianjun Chen, Bi Chen, Yao Jiang, Jianwei Zhang, Mingjie Liu, Qin Yang and Huiying Liu
Plants 2025, 14(12), 1785; https://doi.org/10.3390/plants14121785 - 11 Jun 2025
Viewed by 523
Abstract
Salt stress severely impairs photosynthesis and development in tomato seedlings. This study investigated the regulatory role of exogenous melatonin (MT) on photosynthetic performance under salt stress by determining chlorophyll content, chlorophyll a fluorescence parameters, Calvin cycle enzyme activities, and related gene expression. Results [...] Read more.
Salt stress severely impairs photosynthesis and development in tomato seedlings. This study investigated the regulatory role of exogenous melatonin (MT) on photosynthetic performance under salt stress by determining chlorophyll content, chlorophyll a fluorescence parameters, Calvin cycle enzyme activities, and related gene expression. Results showed that salt stress significantly reduced chlorophyll content and impaired photosystem II (PSII) functionality, as evidenced by the increased minimum fluorescence (Fo) and decreased maximum quantum efficiency of PSII (Fv/Fm) and effective PSII quantum yield (ΦPSII). MT application mitigated these negative effects, as reflected by higher Fv/Fm, increased chlorophyll content, and lower non-photochemical quenching (NPQ). In addition, MT-treated plants exhibited improved PSII electron transport and more efficient use of absorbed light energy, as shown by elevated ΦPSII and qP values. These changes suggest improved PSII functional stability and reduced excess thermal energy dissipation. Furthermore, MT significantly enhanced both the activity and expression of key enzymes involved in the Calvin cycle, including ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco), Rubisco activase (RCA), phosphoglycerate kinase (PGK), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), fructose-1,6-bisphosphatase (FBPase), fructose-bisphosphate aldolase (FBA), transketolase (TK), and sedoheptulose-1,7-bisphosphatase (SBPase), thereby promoting carbon fixation and ribulose-1,5-bisphosphate (RuBP) regeneration under salt stress. Conversely, inhibition of endogenous MT synthesis by p-CPA exacerbated salt stress damage, further confirming MT’s crucial role in salt tolerance. These findings demonstrate that exogenous MT enhances salt tolerance in tomato seedlings by simultaneously improving photosynthetic electron transport efficiency and upregulating the activity and gene expression of key Calvin cycle enzymes, thereby promoting the coordination between light reactions and carbon fixation processes. This study provides valuable insights into the comprehensive regulatory role of MT in maintaining photosynthetic performance under saline conditions. Full article
(This article belongs to the Section Plant Physiology and Metabolism)
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21 pages, 4255 KiB  
Article
Pulsed Electric Fields-Driven Enhancement of Tomato Seed Quality and Resilience: Improving Germination, Stress Tolerance, and Microbial Disinfection
by Gulsun Akdemir Evrendilek and Bahar Yalçın
Appl. Sci. 2025, 15(12), 6447; https://doi.org/10.3390/app15126447 - 8 Jun 2025
Viewed by 621
Abstract
Seed quality is vital for agricultural productivity, as it directly influences the crop yield and resilience to environmental stressors. This study evaluated the effectiveness of a pulsed electric field (PEF) treatment in enhancing the tomato (Solanum lycopersicum) seed quality, seedling growth, [...] Read more.
Seed quality is vital for agricultural productivity, as it directly influences the crop yield and resilience to environmental stressors. This study evaluated the effectiveness of a pulsed electric field (PEF) treatment in enhancing the tomato (Solanum lycopersicum) seed quality, seedling growth, and microbial safety. Tomato seeds were treated with PEFs at energy levels ranging from 1.07 to 17.28 J, and several parameters were assessed, including the germination rate, normal seedling development, tolerance to cold and salinity stress, electrical conductivity, and microbial inactivation. The highest germination rate (72.81%) was observed at 15.36 J on the seventh day of germination, whereas the highest normal seedling rate (94.62%) was recorded at 17.28 J (p ≤ 0.05). The germination under cold stress (5 days at 24 °C) was highest, with a 46.67% germination observed at both 1.92 and 10.88 J. PEF-treated seeds exposed to 100 and 200 mM of NaCl exhibited significantly improved germination compared to the controls (p ≤ 0.05). The electrical conductivity (EC) was more influenced by the incubation time than by the PEF intensity, as the EC of all samples showed a significant increase from 4 to 8 h. The samples treated with 17.28 J exhibited the highest germination rates under salt stress, reaching 62.00 ± 0.90% and 50.00 ± 0.60% under 100 mM and 200 mM of NaCl, respectively (p ≤ 0.05). The initial mean counts of the total mesophilic aerobic bacteria and the total mold and yeast—4.00 ± 0.03 and 3.06 ± 0.03 log cfu/g, respectively—were reduced to undetectable levels by the application of 17.28 J, with higher energy levels yielding greater inactivation. These findings demonstrate that the PEF is a promising technique for enhancing seed quality, promoting seedling vigor, and reducing microbial contamination, supporting its application in sustainable agriculture. Full article
(This article belongs to the Section Agricultural Science and Technology)
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