Search Results (182)

The architecture of rice tillers plays a pivotal role in yield potential, yet conventional phenotyping methods have struggled to capture these intricate three-dimensional (3D) structures with high fidelity. In this study, a 3D model reconstruction method was developed specifically for rice tillers to overcome the challenges posed by their slender, feature-poor morphology in multi-view stereo-based 3D reconstruction. By applying strategically designed colorful reference markers, high-resolution 3D tiller models of 231 rice landraces were reconstructed. Accurate phenotyping was achieved by introducing ScaleCalculator, a software tool that integrated depth images from a depth camera to calibrate the physical sizes of the 3D models. The high efficiency of the 3D model-based phenotyping pipeline was demonstrated by extracting the following seven key agronomic traits: flag leaf length, panicle length, first internode length below the panicle, stem length, flag leaf angle, second leaf angle from the panicle, and third leaf angle. Genome-wide association studies (GWAS) performed with these 3D traits identified numerous candidate genes, nine of which had been previously confirmed in the literature. This work provides a 3D phenomics solution tailored for slender organs and offers novel insights into the genetic regulation of complex morphological traits in rice. Full article

Foliar application of biostimulants can be a valid option to reach the goal of sustainable intensification in agriculture, especially in extensive crops such as durum wheat. However, due to the wide range of active ingredients and their mixtures available in the market, the need to select the most efficient product in a specific growing environment is of dramatic importance to achieve remarkable results in yield and grain quality. To analyze the potential of different active ingredients, a field trial was performed in two consecutive growing seasons (2023 and 2024) under Mediterranean climatic conditions. A randomized block design with three replicates was used. Durum wheat cultivar “Iride” was treated with the following five foliar biostimulants in comparison with the untreated control (T0): seaweed and plant extracts (T1); micronized vaterite (T2); culture broth of Pseudomonas protegens (T3); humic and fulvic acids (T4); organic nitrogen fertilizer (N 5%) containing glycine betaine (T5). Biostimulant treatment was applied at the end of tillering and at heading. Root length, chlorophyll content, grain yield, yield components and grain quality were measured and subjected to a one-way analysis of variance. As compared to the control, seaweed and plant extracts as well as micronized vaterite showed the best results in terms of grain yield (29% and 24% increase, respectively), root length (120% and 77% increase, respectively) and grain protein content (one percentage point increase, from approx. 12% to 13%). The results from this study can help Mediterranean farmers and researchers to develop new fertilization protocols to reach the goals of the “Farm to Fork” European strategy. Full article

Late sowing and spring low temperatures have a great impact on the growth and maturation of wheat in the rice–wheat rotation region. In order to analyze the impacts of cold stress in February in early spring on yield formation and agronomic traits of wheat on different sowing dates, a controlled pot experiment was performed using the widely promoted and applied spring-type wheat variety Yangmai23 (YM23). The yield of wheat treated with late sowing date II (SDII, 21 November) and overly late sowing date III (SDIII, 9 December) were both lower than that of wheat sown on the suitable date I (SDI, 1 November). The yield of late-sown wheat decreased by 40.82% for SDII and by 66.77% for SDIII, compared with SDI, and these three treatments of wheat all grew under the natural conditions as the control treatments. The plant height, stem diameter of the internode below the ear, flag leaf length and area, and total awn length of the spike, as well as the spike length of late-sown wheat, were all significantly lower than those of wheat in SDI treatment. Early spring low temperatures exacerbated the decline in yield of wheat sown on different dates, to some extent. Despite showing higher net photosynthetic rate, stomatal conductance, and transpiration rate in flag leaves of the SDIII treatment under low-temperature stress than those of the other treatments at anthesis, overly late sowing led to minimal leaf area, shorter plant height, fewer tillers, and smaller ears, ultimately resulting in the lowest yield. Our study suggested that additional focus and some regulation techniques are needed to be studied further to mitigate the combined negative impacts of late sowing and low-temperature stress in early spring on wheat production. Full article

An exploration and understanding of cultivar adaptability to specific environmental conditions are critical in rice breeding. This study aimed to compare the agro-morphological data of 36 japonica rice cultivars (Oryza sativa L.) from Chinese rice accessions grown under two different environments (Fengyang and Hexian) and to identify important genes associated with key traits in the cultivars. Higher significant differences were observed between Fengyang and Hexian in traits like, grain width, grain length, yield per plot, plant height, and tiller number with cultivars grown in Hexian having the greatest values. This revealed that the environment in Hexian favored these traits, and most cultivars performed better in Hexian than in Fengyang. Correlation analysis also showed strong positive correlations between tiller number and yield per plot in both environments, indicating the influence of tiller number on rice yield potential. The PCR analysis showed the amplification of DEP1, Ghd7, Wx, Chalk5, COLD1, DST, Xa13, and Bph6 in most japonica cultivars, indicating presence of these genes in the cultivars. This study suggests that differences in agronomic performance between the cultivars grown in Fengyang and Hexian might be caused by differences in environmental conditions. This finding could be valuable for future breeding of high-yielding and climate-resilient cultivars. Full article

The increased frequency of extreme heat stress events due to climate change is adversely impacting rice yield. Nitrogen (N) is an essential element in the synthesis of chlorophyll in rice, contributing substantially to the achievement of spikelet fertility and addressing the high yields. Two experiments were conducted in Japan and Afghanistan in 2020 and 2022, respectively, utilizing IR64 and Nipponbare (NPB) varieties to elucidate the efficacy of N top-dressing on spikelet fertility and yield of rice under heat stress conditions. In experiment I, the treatments involved were based on N application before panicle emergence in pots, including (1) control (fertilized at the tillering stage), (2) control + N topdressing, (3) heat stress (fertilized at the tillering stage), and (4) heat stress + N topdressing. Experiment II consisted of (1) control (basal dressing at the tillering stage) and (2) control + N topdressing, which was conducted under field conditions. Results showed that N application significantly (p < 0.05) increased SPAD values and spikelet fertility rates in both experiments. A positive correlation (range; r = 0.83–0.98) was observed between enhanced SPAD values and spikelet fertility rates in IR64 and NPB rice varieties under both ambient and heat stress conditions. Moreover, there were notable increases in photosynthetic rate (7.4% to 52.6%) and leaf transpiration. N top dressing significantly (p < 0.05) increased the panicle length, panicle weight, number of secondary branches/panicle, filled grain/panicle, total spikelets/panicle, and yield/plant. However, there was no significant difference in the number of primary branches per panicle and 1000-grain weight. In addition, the number of unfilled grains/panicle decreased from 5.5 to 49.7% with N top dressing in both experiments. Applying N as a top dressing improved the spikelet fertility percentage and other yield components, resulting in a high yield/plant. Full article

This study evaluated the phosphorus use efficiency (PUE) in two genotypes and one cultivar of Brachiaria decumbens (HD1, HD4, and Basilisk) and the productive, morphogenic, and structural responses. The experimental design used was randomized blocks with five P rates (0, 13, 26, 52, and 104 mg dm⁻³). There was no forage × P rate interaction (p > 0.05), but the P rates affected the leaf appearance rate (TAR; p = 0.0314), leaf life span (LLS; p = 0.0207), phyllochron (PC; p = 0.0207), leaf elongation rate (LER; p = 0.0350), stem elongation rate (SER; p = 0.0109), and the number of live leaves (NLL; p = 0.0033). The LAR, LLS, and PC followed quadratic trends, increasing up to 52 mg dm⁻³, while the PC declined. The FLL, SER, and NLL increased linearly. HD1 had the highest final leaf length, LER, and NLL, while Basilisk had the lowest. There was an interaction for tiller population density (p = 0.0431), with increases of 0.26, 0.28, and 0.24 tillers for HD4, HD1, and Basilisk, respectively. Forage production (FP) increased with P, gaining 0.51 g of DM for each mg dm⁻³ of P added. The HD1 genotype showed higher FLL, LER, NLL, FP, and higher PUE than the HD4 genotype and the Basilisk cultivar. HD1 was more responsive to higher P rates for root production, indicating a greater need for nutrients to reach its productive potential. Phosphate fertilization positively influenced morphogenesis and forage production in the evaluated genotypes and cultivars. The HD1 genotype stood out in relation to the others, showed superiority in forage and root production, and demonstrated greater efficiency in the use of P, at a dose of 13 mg dm⁻³. Full article

Hippophae rhamnoides (family Elaeagnaceae) is a deciduous shrub that has become a uniquely advantageous species in the arsenic sandstone area of Inner Mongolia due to its well-developed root system and strong tillering ability. This study, by taking 10-year-old H. rhamnoides in the arsenic sandstone area as the research object and analyzing the morphological traits of their fine roots and their coordination within soil under different stubble heights (0, 10, 15, and 20 cm) and non-stubble treatment, aims to select the optimal stubble height that is most conducive to the rejuvenation of H. rhamnoides and thus improve the decline in the productivity of H. rhamnoides in this region. The results reveal significant differences in fine root and soil properties under different stubble heights (p < 0.05). Among different traits, fine root area density shows the highest total coefficient of variation, making it the most sensitive trait. Principal component analysis results indicate that after stubble treatment, the traits of H. rhamnoides fine roots center on high specific surface area (0.316) + high specific root length (0.312), shifting toward a resource-acquisition ecological strategy with the best foraging efficiency observed under a stubble height of 15 cm. Soil N:P and C:P can explain 66% and 61% of the root morphological traits strategies deployed during stubble treatment, respectively. Fine roots exhibit high adaptability to the breaking of phosphorus limitation and fixation of carbon and nitrogen. Full article

Water stress and nutrient stress are major limiting factors affecting crop productivity. Biochar-based organic fertilizers improve soil nutrient availability, water use efficiency (WUE), and crop yields under these adverse conditions. This study investigated the mechanistic effects of biochar–bokashi mixtures under a controlled glasshouse pot experiment on soil fertility, available nutrients, soil moisture, plant water use efficiency (PWUE), and wheat yield parameters under three moisture levels. Four treatments were included, (1) a control, (2) bokashi only, (3) 1% biochar + bokashi, and (4) 2% biochar + bokashi, under 30% (IR₃₀), 50% (IR₅₀), and 60% (IR₆₀) field capacity, totaling twelve treatments in a completely randomized design with three replications. The combined bokashi–biochar application significantly (p < 0.05) improved growth parameters and yields, including plant height, number of fertile tillers (NFT), number of spikes (NS), spike length (SL), 1000-grain weight, biological yield (BY), root biomass, and grain yield (GY), compared to the control and bokashi-only treatments. Bokashi with 1% biochar exhibited superior agronomic performance over the other treatments, including 2% biochar. Biochar addition enhanced soil moisture and PWUE across irrigation levels. Bokashi–biochar treatments under IR₃₀ outperformed the control and bokashi-only treatments under IR₆₀, highlighting biochar’s effectiveness in alleviating water stress and increasing yields. Moreover, co-application significantly increased soil pH while enhancing the organic carbon, total nitrogen, available phosphorous and exchangeable potassium nutrient levels, which positively correlated with yield. Bokashi–biochar mixtures have been proven to be an effective strategy to enhance soil fertility, increase soil moisture to alleviate water stress and support sustainable wheat production under water- and nutrient-limited conditions. Full article

Salinity and water scarcity are among the major environmental challenges requiring the use of non-conventional water sources and the adoption of salt-tolerant crops. We assessed the impact of irrigation with different concentrations of NaCl: 50 mM and 150 mM on the growth parameters and yield of triticale, soil salinity, distribution of active root density, and concentrations of Na⁺ and NO₃⁻ ions at harvest compared to freshwater under zero leaching conditions. Irrigation was applied on a daily basis based on weight measurements of micro-lysimeter pots. Growth parameters, including plant height, LAI, number of leaves, number of tillers, and soil salinity, were observed across the growing season. Spatial distributions of soil salinity, normalized root length density (NRLD), concentrations of Na⁺ and NO₃⁻ in soil profile were measured in two dimensions. The results indicate that irrigating with 150 mM of NaCl H₂O significantly affected the crop growth, causing salts, particularly Na⁺, to reside in the topsoil, reducing NRLD with soil depth, crop water demand, and NO₃⁻ uptake. The application of 150 mM and 50 mM of NaCl H₂O reduced crop water use by 4 and 2.6 times as well as grain yield by 97% and 42%, respectively, compared to freshwater. This shows that irrigation with concentration equal to or higher than 150 mM NaCl will result in very low production. To achieve higher yield and crop water productivity, irrigation with NaCl concentration of 50 mM or less is recommended to grow triticale in marginal regions with limited freshwater resources. Full article

Pearl millet is a cereal crop vital for food security in Africa and Asia. It is widely adapted for dual-purpose production, providing grain for human consumption and fodder for livestock, particularly during dry seasons. This study aimed to evaluate three dual-purpose pearl millet genotypes from Namibia and South Africa while exploring prospects for future production practices. Growth analysis is essential for quantitatively assessing crop growth, development, and production. A growth analysis study was conducted by collecting and evaluating weather data, water use efficiency, and crop growth parameters that are valuable for modelling, allowing for observing and quantifying strengths and weaknesses between varieties for food and fodder or as dual-purpose varieties. The analysis focused on water use, plant height, fractional radiation interception, panicle number, tiller number, flowering date, stem diameter, panicle length, dry matter distribution, harvest index, grain yield, and panicle diameter, under well-watered, supplementary irrigation, and rainfed conditions. The landrace achieved a higher yield under well-watered conditions than the hybrid and improved varieties. The hybrid pearl millet produced a greater fodder yield than the improved short variety in well-watered and water-limited treatments. The improved variety suits grain production, whereas the landrace and hybrid are more suitable for dual-purpose production. The landrace performed well in rainfed and irrigated situations across the three seasons. The landrace (Kantana) recorded the highest grain yield (1.01 kg m⁻²), followed by the hybrid (Agrigreen) (0.97 kg m⁻²), while the improved variety (Kangara) had the lowest grain yield (0.74 kg m⁻²). Full article

To effectively mine and utilize the valuable genes of wild emmer wheat (Triticum dicoccoides, 2n = 4x = 28, AABB), this study conducted an investigation of agronomic traits using two sets of chromosome arm substitution lines (CASLs) of wild emmer wheat in the backgrounds of the common wheat varieties Bethlehem (BLH) and Chinese Spring (CS). The results indicated significant differences in growth parameters, including seedling agronomic traits, heading date (HD), and yield traits among the various CASLs in both the BLH and CS backgrounds. In both genetic backgrounds, the number of tillers in CASL7BS was significantly fewer than that of the parents. Additionally, the average leaf width of six CASLs (2BS, 1AL, 7AL, 5BS, 4AS, and 2BL) was significantly narrower compared to the parents. Among CASLs in the CS background, CASL2BS exhibited a significantly narrower average leaf width and shorter average plant height compared to both the parents and early-maturing CASLs. Conversely, CASL4AL exhibited significantly more tillers and a shorter average plant height than the other CASLs. In the BLH background, the spike phenotypes of all CASLs showed no significant differences from BLH. However, in the CS background, CASL6AS and CASL5AL demonstrated significantly longer spike lengths than CS. Moreover, CASL6BL had more spikelets per spike than CS. CASLs 4AS, 4AL, 6BS, and 6BL exhibited basal short awns and apical long awns, whereas the remaining CASLs displayed no awns, a pattern consistent with CS. We hypothesize that genes governing physiological traits such as seedling tiller number, leaf width, plant height, and spike traits are likely located on the corresponding chromosome arms. Full article

Pearl millet (Pennisetum glaucum (L.) R. BR.) is a C4 plant adapted to semi-arid climates and is one of the primary staple foods in Sub-Saharan Africa, including in Namibia. The decline in yields associated with water scarcity over the years has been a national concern in the country. An experimental field trial was conducted at the Mannheim Crop Research Station, Namibia, during the 2023 and 2024 cropping seasons to investigate the response of two local pearl millet cultivars (Kangara and Okashana 2) to different water regimes (100%, 75%, and 50% crop evapotranspiration [ETc]) according to morpho-physiological and yield parameters. Pearl millet was planted in a split-plot factorial design with four rows per plot under the three water regimes, and the genotypes were planted in subplots. The results revealed that the water regime had a significant effect on plant height, number of leaves, tillers, chlorophyll content, stomatal conductance, leaf temperature, stem thickness, number of productive tillers, panicle diameter, panicle length, dry panicle weight, biomass, grain weight, and 1000-seed weight of the two pearl millet cultivars (p < 0.001). At 50% ETc, the water regime significantly reduced the growth and yield parameters compared with the 75% ETc and 100% ETc water regimes, highlighting the significance of water in plant development and growth. The findings highlighted that both cultivars responded similarly to water stress. Seventy-five percent of ETc is recommended to be applied in pearl millet systems in semi-arid conditions. This research has significant implications for the planning and producing of pearl millet under water-limited environments under changing climatic conditions. Full article

We generated and characterized knockout mutant lines of the OsPHS3 gene using the CRISPR/Cas9 system. The knockout lines of the OsPHS3 gene showed that 1 bp and 7 bp deletion, early termination codons were used for protein production. Agronomic characteristics of knock-out lines were reduced in plant height, culm diameter, panicle length, seed size and weight, except for the number of tillers. In addition, we analyzed the expression levels of carotenoid biosynthesis genes by qRT-PCR. Among the genes encoding carotenoid metabolic pathway enzymes, the level of transcripts of PSY1, PSY2, PSY3, PDS and ZDS were higher in the KO lines than in the WT line. In contrast, transcription of the ε-LCY, β-LCY and ZEP1 genes were downregulated in the KO lines compared to the WT line. Also, the KO lines decreased carotenoid content and ABA amount compared to WT, while preharvest sprouts increased. These results suggested that they would certainly help explain the molecular mechanisms of PHS in other crops, such as wheat and barley, which are susceptible to PHS. Full article

Sugarcane (Saccharum spp.), a critical crop for sugar and bioenergy production, faces challenges in genetic improvement due to limited genetic diversity from selective breeding. Expanding genetic resources through intergeneric hybridization, particularly with Narenga porphyrocoma, offers a promising avenue to introduce traits like stress resistance and high biomass productivity. However, verifying true hybrids remains challenging with traditional morphological methods. This study employed tetra-primer ARMS-PCR and genomic in situ hybridization (GISH) to accurately identify intergeneric hybrids between S. officinarum and N. porphyrocoma. Species-specific primers were designed based on SNPs in the nrDNA-ITS region for ARMS-PCR, enabling effective differentiation of parental and hybrid genotypes, while GISH confirmed the chromosomal composition of hybrids, revealing an n + n inheritance pattern. The results demonstrated the potential of N. porphyrocoma to improve sugarcane’s tillering and leaf length, although sucrose content was lower in hybrids, suggesting the need for further breeding efforts. This study uniquely contributes to sugarcane breeding by providing an effective method for hybrid verification and laying a foundation for incorporating beneficial N. porphyrocoma genes into sugarcane cultivars. Full article

Rice (Oryza sativa L.) is one of the most crucial cereal crops worldwide, serving as a staple food for a significant portion of the global population. Rice is the second most important staple food crop in Pakistan after wheat, and it is also a major export commodity. Concerning this, the current study aimed to evaluate the effects of different seed rates on the yield and yield-contributing parameters of rice varieties. The experiment was conducted over two consecutive kharif summer seasons, from 2020–21 and 2021–22, at the Pakistan Agricultural Research Council (PARC) Rice Program experimental area in Kala Shah Kaku, Lahore, Pakistan, by following a factorial randomized complete block design with three replications using coarse rice (KSK-133) and fine rice (Super Basmati) varieties. Different seed rates, including 27 kg/ha, 22 kg/ha, 17 kg/ha, and 12 kg/ha, were tested during the experiment. Different growth and yield-related attributes, such as plant height (cm), the number of productive tillers per plant, panicle length (cm), the number of grains per panicle, and grain yield (m⁻²), were recorded. The results showed that for KSK-133 and Super Basmati, the maximum grain yield was achieved at a sowing rate of 27 kg/ha in direct seed rice (DSR). The lowest yield was observed at a seeding rate of 12 kg/ha for KSK-133 and Super Basmati in DSR. Both basmati (Super Basmati) and coarse-grain (KSK-133) varieties exhibited similar responses to seed rate treatments, with the optimal performance observed at the highest seed rate of 27 kg/ha for both seasons. Grains per panicle and thousand grain weight emerged as critical determinants of yield, highlighting the need to balance vegetative growth with reproductive development. Breeding programs should focus on developing varieties that balance vegetative traits like tiller production and panicle length with reproductive traits to enhance overall yield. Based on these findings, it is concluded that using an optimal seeding rate of 27 kg/ha for direct-seeded fine and coarse rice varieties is beneficial in terms of tillers and higher yield. Full article