Search Results (201)

Increasing the discharge of saline wastewater from an industrial field poses a challenge for applicable Anammox-based technologies. This study established the integrated partial sulfur-driven denitrification and Anammox (SPDA) system to explore the effects of different salinity levels on nitrogen conversion features. The results of batch tests suggested that sulfur-driven denitrification exhibited progressive suppression of nitrate reduction (97.7% → 12.3% efficiency at 0% → 4% salinity) and significant nitrite accumulation (56.4% accumulation rate at 2% salinity). Anammox showed higher salinity tolerance but still experienced drastic TN removal decline (97.6% → 17.3% at 0% → 4% salinity). Long-term operation demonstrated that the SPDA process could be rapidly established at 0% salinity and stabilize with TN removal efficiencies of 98.1% (1% salinity), 72.8% (2% salinity), and 70.2% (4% salinity). The robustness of the system was attributed to the appropriate strategy of gradual salinity elevation, the promoted secretion of protein-dominated EPS, the salinity-responsive enrichment of Sulfurimonas (replacing Thiobacillus and Ferritrophicum) as sulfur-oxidizing bacteria (SOB), and the sustained retention and activity of Brocadia as AnAOB. The findings in this study deepen the understanding of the inhibitory effects of salinity on the SPDA system, providing a feasible solution for saline wastewater treatment with low cost and high efficiency. Full article

Snails at hydrothermal vents rely on symbiotic bacteria for nutrition; however, the specifics of these associations in adapting to such extreme environments remain underexplored. This study investigated the community structure and metabolic potential of bacteria associated with two Indian Ocean vent snails, Chrysomallon squamiferum and Gigantopelta aegis. Using microscopic, phylogenetic, and metagenomic analyses, this study examines bacterial communities inhabiting the foot and gland tissues of these snails. G. aegis exhibited exceptionally low bacterial diversity (Shannon index 0.14–0.18), primarily Gammaproteobacteria (99.9%), including chemosynthetic sulfur-oxidizing Chromatiales using Calvin–Benson–Bassham cycle and methane-oxidizing Methylococcales in the glands. C. squamiferum hosted significantly more diverse symbionts (Shannon indices 1.32–4.60). Its black variety scales were dominated by Campylobacterota (67.01–80.98%), such as Sulfurovum, which perform sulfur/hydrogen oxidation via the reductive tricarboxylic acid cycle, with both Campylobacterota and Gammaproteobacteria prevalent in the glands. The white-scaled variety of C. squamiferum had less Campylobacterota but a higher diversity of heterotrophic bacteria, including Delta-/Alpha-Proteobacteria, Bacteroidetes, and Firmicutes (classified as Desulfobacterota, Pseudomomonadota, Bacteroidota, and Bacillota in GTDB taxonomy). In C. squamiferum, Gammaproteobacteria, including Chromatiales, Thiotrichales, and a novel order “Endothiobacterales,” were chemosynthetic, capable of oxidizing sulfur, hydrogen, or iron, and utilizing the Calvin–Benson–Bassham cycle for carbon fixation. Heterotrophic Delta- and Alpha-Proteobacteria, Bacteroidetes, and Firmicutes potentially utilize organic matter from protein, starch, collagen, amino acids, thereby contributing to the holobiont community and host nutrition accessibility. The results indicate that host species and intra-species variation, rather than the immediate habitat, might shape the symbiotic microbial communities, crucial for the snails’ adaptation to vent ecosystems. Full article

Groundwater at petroleum-contaminated sites typically exhibits elevated dissolved inorganic carbon (DIC) levels due to hydrocarbon biodegradation; however, our prior field investigations revealed an enigmatic DIC depletion anomaly that starkly contradicts this global pattern and points to an unrecognized carbon sink. In a breakthrough demonstration, this study provides the first experimental confirmation that sulfur-oxidizing bacteria (SOB) drive substantial carbon sequestration via a coupled sulfur oxidation autotrophic assimilation process. Through integrated hydrochemical monitoring and 16S rRNA sequencing in an enrichment culture system, we captured the complete DIC transformation trajectory: heterotrophic acetate degradation initially increased DIC to 370 mg/L, but subsequent autotrophic assimilation by SOB dramatically reduced DIC to 270 mg/L, yielding a net consumption of 85 mg/L. The distinctive pH dynamics (initial alkalization followed by acidification) further corroborated microbial regulation of carbon cycling. Critically, Pseudomonas stutzeri and P. alcaliphila were identified as the dominant carbon-fixing agents. These findings definitively establish that chemolithoautotrophic SOB convert DIC into organic carbon through a “sulfur oxidation-carbon fixation” coupling mechanism, overturning the conventional paradigm of petroleum-contaminated sites as perpetual carbon sources. The study fundamentally redefines natural attenuation frameworks by introducing microbial carbon sink potential as an essential assessment metric for environmental sustainability. Full article

Systematic studies were conducted at one of the uranium deposits in Kazakhstan. Native strains of Acidithiobacillus ferrooxidans bacteria were found in leaching solutions at the deposit. The modeling of iron species in the culturing medium was analyzed using Medusa software v.2.0.5. To intensify the process, the bacterial strains were propagated in laboratory conditions, and strains available in the laboratory were added. The ability of bacteria to oxidize divalent iron to trivalent iron at 8 °C in laboratory conditions was established, but the oxidation rate was low. It was found that the limiting stage of bioleaching use in deposit conditions is the temperature mode, the content of divalent iron, and oxygen. A biomass volume of 15 L was initially cultivated under laboratory conditions, and subsequently scaled up to 3 m³ in production using three 1 m³ pachucas with air aeration. In addition, pilot tests were carried out directly in production conditions and biomass in the volume of over 30 m³ was produced. The kinetics of the oxidation process of divalent iron to trivalent iron in 1 g/h under production conditions was established. The features of the bioleaching process at the field are shown as follows: since production, the solution contains the main microelements for the nutrition and reproduction of bacteria, and recommendations for the use of bioleaching are proposed. Research has established that under conditions of a shortage of divalent iron in the solution, sulfuric acid is formed due to sulfur-containing substances. It was observed that for the effective conversion of divalent iron to trivalent iron, bacteria of the provided strain and air (oxygen) supply are sufficient. The corresponding recommendations were issued during the work. Full article

This study addresses the microbial corrosion of cement-based materials in coastal urban sewer networks, systematically investigating the kinetic mechanisms of sulfur biogeochemical cycling under seawater infiltration conditions. Through dynamic monitoring of sulfide concentrations and environmental parameter variations in anaerobic pipelines, a multiphase coupled kinetic model integrating liquid-phase, gas-phase, and biofilm metabolic processes was developed. The results demonstrate that moderate salinity enhances the activity of sulfate-reducing bacteria (SRB) and accelerates sulfate reduction rates, whereas excessive sulfide accumulation inhibits SRB activity. At 35 °C, the mathematical model coefficient “a” for sulfate reduction in the reactor with 3 g/L salinity was significantly higher than those in reactors with 19 g/L and 35 g/L salinities, with no significant difference observed between the latter two. Overall, high sulfate concentrations do not act as limiting factors for sulfide oxidation under anaerobic conditions; instead, they enhance the reaction within specific concentration ranges. The refined kinetic model enables prediction of sulfur speciation in tropical coastal urban sewer pipelines, providing a scientific basis for corrosion risk assessment. Full article

While rhizosphere microbiome functions in saline soils are well documented, complementary microbial strategies between pioneer and late-successional halophytes remain unexplored. Here, we used 16S rRNA sequencing and FAPROTAX functional prediction to compare the rhizosphere bacterial communities of two key halophytes—Suaeda glauca and Phragmites communis—in a reclaimed coastal wetland. The results demonstrate that both plants significantly restructured microbial communities through convergent enrichment of stress-tolerant taxa (Firmicutes, Pseudomonas, Bacillus, and Planococcus) while suppressing sulfur-oxidizing bacteria (Sulfurovum and Thiobacillus). However, they exhibited distinct microbial specialization: S. glauca uniquely enriched organic-matter-degrading taxa (Promicromonospora and Zhihengliuella) and upregulated aromatic compound degradation (2.29%) and ureolysis (0.86%) according to FAPROTAX analysis, facilitating carbon mobilization in early successional stages. Notably, P. communis selectively recruited nitrogen-cycling Serratia, with increased nitrate respiration (3.51% in P. communis vs. 0.91% in S. glauca) function, reflecting its higher nitrogen demand. Environmental factors also diverged: S. glauca’s microbiome correlated with potassium and sodium, whereas P. communis responded to phosphorus and chloride. These findings uncover distinct microbial recruitment strategies by halophytes to combat saline stress—S. glauca–P. communis synergy through microbial carbon-nitrogen coupling—offering a template for consortia design in saline soil restoration. Full article

This study investigated the role of indigenous inoculum (primarily sulfur-oxidizing Acidithiobacillus thiooxidans and other acidophilic bacteria) in heavy metal removal from sewage sludge (SS) and anaerobic digested sludge (ADS). Four treatments were evaluated: inoculum + elemental sulfur (S/ADS + E), inoculum alone (S/ADS + B), elemental sulfur alone (S/ADS + S), and a control with no additives. After 7 days of bioleaching, SS and ADS exhibited comparable heavy metal removal rates on Ni (92–98%) and Pb (88–92%), which were significantly more mobilized than Cu (30–44%) and Cr (63–73%). After bioleaching treatment, residual metals in both sludge types were predominantly sequestered in the oxidizable (F3) and residual (F4) fractions, markedly reducing their environmental mobility and pollution risk during land application. The dewaterability performance, assessed via capillary suction time (CST), reached the optimal values in S + E and ADS + E within 24–48 h, after which CST increased alongside rising extracellular polymeric substances and dissolved organic carbon. While the S/ADS + B configuration exhibited marginally reduced Cu, Ni, and Pb removal efficiencies relative to S/ADS + E, it demonstrated superior dewaterability characteristics under equivalent reaction durations. These results suggest that limiting the sulfur (S₀) supply to moderate the growth and activity of autotrophic A. thiooxidans can maintain the bioleaching pH within 2.0–3.0, striking a balance between effective heavy metal removal and favorable dewatering performance. Full article

Background: Neurodegenerative diseases (NDDs) are multifactorial disorders frequently associated with gut dysbiosis, oxidative stress, and inflammation; however, the pathophysiological mechanisms remain poorly understood. Methods: Using untargeted mass spectrometry-based metabolomics and 16S sequencing of human stool, we investigated bacterial and metabolic dyshomeostasis in the gut microbiome associated with early disease stages across three NDDs—amyotrophic lateral sclerosis (ALS), Alzheimer’s disease (AD), Parkinson’s disease (PD)—and healthy controls (HC). Results: We discovered a previously unrecognized link between a microbial-derived metabolite with an unknown role in human physiology, 2,3-dihydroxypropane-1-sulfonate (DHPS), and gut dysbiosis in NDDs. DHPS was downregulated in AD, ALS, and PD, while bacteria involved in DHPS metabolism, Eubacterium and Desulfovibrio, were increased in all disease cohorts. Additionally, select taxa within the Clostridia class had strong negative correlations to DHPS, suggesting a potential role in DHPS metabolism. A catabolic product of DHPS is hydrogen sulfide, and when in excess, it is known to promote inflammation, oxidative stress, mitochondrial damage, and gut dysbiosis, known hallmarks of NDDs. Conclusions: These findings suggest that cryptic sulfur metabolism via DHPS is a potential missing link in our current understanding of gut dysbiosis associated with NDD onset and progression. As this was a hypothesis generating study, more work is needed to elucidate the role of DHPS in gut dysbiosis and neurodegenerative diseases. Full article

Sulfur cycling is a fundamental biogeochemical process, yet its microbial underpinnings in environments like the Isinuka sulfur pool remain poorly understood. Using high-throughput Illumina 16S rRNA sequencing and PICRUSt-based functional inference, we analyzed bacterial diversity and metabolic potential in sediment and water samples. Sediments, characterized by high sulfide/sulfate/thiosulfate, salinity, alkalinity, and organic matter content under anoxic conditions, supported diverse sulfur-reducing and organic-degrading bacteria, primarily from the Proteobacteria, Firmicutes, Bacteroidetes, and Actinobacteria phyla. In contrast, the anoxic water column harbored a less diverse community dominated by α-, γ-, and β-Proteobacteria, including Thiocapsa and Lutimaribacter. Sulfur oxidation genes (soxABCXYZ, sqr) were abundant in water, while sulfate reduction genes (dsrAB, aprAB, and sat/met3) were concentrated in sediments. Core microbiome analysis identified Thiocapsa, Lutimaribacter, and Delftia as functional keystones, integrating sulfur oxidation and nutrient recycling. Sediments supported dissimilatory sulfate-reducing bacteria (unclassified Desulfobacteraceae, Desulfosarcina, Desulfococcus, Desulfotignum, and Desulfobacter), while water samples were enriched in sulfur-oxidizing bacteria like Thiocapsa. Metabolic profiling revealed extensive sulfur, nitrogen, and carbon cycling pathways, with sulfur autotrophic denitrification and anoxygenic photosynthesis coupling sulfur–nitrogen and sulfur–carbon cycles. This study provides key theoretical insights into the microbial dynamics in sulfur-rich environments, highlighting their roles in biogeochemical cycling and potential applications in environmental management. Full article

Although the bioleaching of secondary copper sulfides has been industrialized for decades, the application of chalcopyrite bioleaching remains under development because of its low leaching rate. The effect of contact microbes on chalcopyrite leaching is still unclear due to the technical challenges in separating the contact (sessile micro-organisms) and the non-contact (planktonic micro-organisms) processes. Chalcopyrite bioleaching experiments were conducted using a novel device that stabilizes the redox potential and distinguishs between the microbial contact and non-contact effects. The contribution of the microbial “contact mechanism” in chalcopyrite leaching was quantified considering different redox potentials, compared to the “non-contact mechanism”. Based on the copper leaching kinetics and morphology of the leaching residue, it was demonstrated that the leaching rate of chalcopyrite was significantly influenced by the redox potential (850 mV > 650 mV > 750 mV), from 6.30% to 14.02% in 8 days leaching time. At each redox potential, the chalcopyrite leaching rate was 9.3%–30.6% higher with the presence of sessile microbes than without sessile microbes. Analysis of the leached chalcopyrite surface using time-of-flight secondary ion mass spectrometry (ToF-SIMS) and X-ray photoelectron spectrometry (XPS) revealed the formation of polysulfide and elemental sulfur at the surface. While the contacted sulfur oxidized the microbes, here, the Acidithiobacillus caldus preferred sessile at the chalcopyrite surface rather than Leptospirillum ferriphilum. Sulfur-oxidizing bacteria reduced the elemental sulfur content at the leach residue surface, thus playing an important role in degrading the sulfur passivation layer. In chalcopyrite bioleaching, the “contact mechanism” was primarily explained by sulfur-oxidizing bacteria promoting chalcopyrite oxidation through the removal of sulfur intermediates, while the “non-contact mechanism” was explained by ferrous-oxidizing microbes influencing the redox potential. Full article

Metagenome-assembled genomes (MAGs) have revolutionized microbial ecology by enabling the genome-resolved study of uncultured microorganisms directly from environmental samples. By leveraging high-throughput sequencing, advanced assembly algorithms, and genome binning techniques, researchers can reconstruct microbial genomes without the need for cultivation. These methodological advances have expanded the known microbial diversity, revealing novel taxa and metabolic pathways involved in key biogeochemical cycles, including carbon, nitrogen, and sulfur transformations. MAG-based studies have identified microbial lineages form Archaea and Bacteria responsible for methane oxidation, carbon sequestration in marine sediments, ammonia oxidation, and sulfur metabolism, highlighting their critical roles in ecosystem stability. From a sustainability perspective, MAGs provide essential insights for climate change mitigation, sustainable agriculture, and bioremediation. The ability to characterize microbial communities in diverse environments, including soil, aquatic ecosystems, and extreme habitats, enhances biodiversity conservation and supports the development of microbial-based environmental management strategies. Despite these advancements, challenges such as assembly biases, incomplete metabolic reconstructions, and taxonomic uncertainties persist. Continued improvements in sequencing technologies, hybrid assembly approaches, and multi-omics integration will further refine MAG-based analyses. As methodologies advance, MAGs will remain a cornerstone for understanding microbial contributions to global biogeochemical processes and developing sustainable interventions for environmental resilience. Full article

The problem of the foul odor caused by H₂S in livestock farms has become a major complaints. In this study, optimal sulfur-oxidizing bacteria (SOB) strains were screened from dairy farm wastewater and the adjacent soil for odor treatment. The strains and physiological functions were determined by identification and genome comparison, and the optimal operating conditions were determined by experiments under different conditions. The identification results showed that the strain that had the highest homology with Halomonas mongoliensis was Halomonas sp. AEB2. The comparative genomic results showed that the average nucleotide identity and DNA–DNA hybridization value were 95.8% and 68.6%, respectively. The optimization results were as follows: sodium succinate-carbon (10 g/L) and ammonium chloride-nitrogen (0.07 g/L). The optimal operating conditions were as follows: seeding rate 4%, temperature 30 °C, stirring speed 90 rpm, and pH 8. The oxidation products of AEB2 were mainly elemental sulfur and tetrathionate, and the metabolic pathway of AEB2 was constructed accordingly. This study suggests a feasible path to reduce H₂S emissions from dairy farms, and it provides theoretical support for the restoration of livestock environment and sustainability. Full article

Two novel marine hydrogen- and sulfur-oxidizing bacteria, designated HSL1-7^T and HSL3-1^T, were isolated from mangrove sediments from Fujian Province, China. Strain HSL1-7^T exhibited Gram-negative, rod-shaped to slightly curved morphology with polar flagellum-driven motility, whereas strain HSL3-1^T was Gram-negative, rod-shaped and non-motile. Strain HSL1-7^T and HSL3-1^T were obligate chemolithoautotrophs, capable of using molecular hydrogen and thiosulfate as an energy source, and molecular oxygen and elemental sulfur as the electron acceptors for growth. Cellular fatty acid profiles revealed similar predominant components (C_16:1ω7c, C_16:0, C_18:1ω7c, and C_14:0) in both strains. Strains HSL1-7^T and HSL3-1^T were strongly diazotrophic, as demonstrated by ¹⁵N₂ fixation when a fixed nitrogen source was absent from the growth medium. The DNA G+C contents of strains HSL1-7^T and HSL3-1^T were determined to be 36.1% and 57.3%, respectively. Based on the 16S rRNA gene sequences, strains HSL1-7^T and HSL3-1^T exhibited the highest sequence similarities with Sulfurimonas marina B2^T (98.5% and 94.45%, respectively). Notably, the 16S rRNA gene sequence similarity between strains HSL1-7^T and HSL3-1^T was 93.19%, indicating that they represent distinct species within the genus Sulfurimonas. Comparative genomic analyses revealed the presence of diverse metabolic profiles in strains HSL1-7^T and HSL3-1^T, including carbon fixation, hydrogen oxidation, sulfur oxidation, and nitrogen fixation. The combined phenotypic, chemotaxonomic, and phylogenetic evidence, including average nucleotide identity and in silico DNA-DNA hybridization values, shows that strains HSL1-7^T and HSL3-1^T represent two novel species of the genus Sulfurimonas for which the names Sulfurimonas microaerophilic sp. nov. and Sulfurimonas diazotrophicus sp. nov. are proposed, with the type strains HSL1-7^T (=MCCC 1A18899^T = KCTC 25640^T) and HSL3-1^T (=MCCC 1A18844^T), respectively. Full article

Background: Fusobacterium nucleatum is a pathobiont that plays a dual role as both a commensal and a pathogen. The oral cavity typically harbors this anaerobic, Gram-negative bacterium. At the same time, it is closely linked to colorectal cancer due to its potential involvement in tumor progression and resistance to chemotherapy. The mechanism by which it transforms from a commensal to a pathogen remains unknown. For this reason, we investigated the role of oxidative status as an initiatory factor in changing the bacterium’s pathogenicity profile. Methods: A clinical strain of F. nucleatum subsp. animalis biofilm was exposed to different oxidative stress levels through varying subinhibitory amounts of H₂O₂. Subsequently, we investigated the bacterium’s behavior in vitro by infecting the HT-29 cell line. We evaluated bacterial colonization, volatile sulfur compounds production, and the infected cell’s oxidative status by analyzing HMOX1, pri-miRNA 155, and 146a gene expression. Results: The bacterial colonization rate, dimethyl sulfide production, and pri-miRNA 155 levels all increased when stressed bacteria were used, suggesting a predominant pathogenic function of these strains. Conclusions: The response of F. nucleatum to different oxidative conditions could potentially explain the increase in its pathogenic traits and the existence of environmental factors that may trigger the bacterium’s pathogenicity and virulence. Full article

Constructed wetlands play a critical role in mitigating aquaculture wastewater pollution. However, the comprehensive treatment performance of aquatic plants and microorganisms under various water treatment processes remains insufficiently understood. Here, a multi-stage surface flow constructed wetland (SFCW) comprising four different aquatic plant species, along with aeration and biofiltration membrane technologies, was investigated to explore the combined effects of aquatic plants and epiphytic biofilms on wastewater removal efficiency across different vegetation periods and treatment processes. The results demonstrated that the total removal efficiency consistently exceeded 60% in both vegetation periods, effectively intercepting a range of pollutants present in aquaculture wastewater. Changes in the vegetation period influenced the performance of the SFCW, with the system’s ability to treat total nitrogen becoming more stable over time. The removal efficiency of the treatment pond planted with submerged plants was highest in July, while the pond planted with emergent plants showed an increased removal rate in November. The aeration pond played a significant role in enhancing dissolved oxygen levels, thereby improving phosphorus removal in July and nitrogen removal in November. Additionally, the α-diversity of epiphytic bacteria in the aeration and biofiltration ponds was significantly higher compared to other ponds. In terms of bacterial composition, the abundance of Firmicutes was notably higher in July, whereas Nitrospirota and Acidobacteriota exhibited a significant increase in November. Furthermore, the functional genes associated with sulfur metabolism, nitrogen fixation, and oxidative phosphorylation displayed significant temporal variations in the aeration pond, highlighting that both growth period changes and treatment processes influence the expression of functional genes within biofilms. Our findings suggest that the integration of water treatment processes in SFCWs enhances the synergistic effects between aquatic plants and microorganisms, helping to mitigate the adverse impacts of vegetation period changes and ensuring stable and efficient wastewater treatment performance. Full article