Search Results (64)

Environmental biofilms are persistent structural components of livestock production systems and represent under-recognized drivers of pathogen persistence and antimicrobial resistance (AMR). This review examines the engineering, ecological, and operational factors that promote biofilm formation in dairy, poultry, and swine environments, with emphasis on drinking water distribution systems, feeding infrastructure, housing surfaces, and waste channels. Biofilms develop preferentially in low-shear zones, dead ends, and aging materials, where they enhance microbial tolerance to sanitation and facilitate horizontal gene transfer. Conventional monitoring approaches, largely based on planktonic sampling and single-time-point testing, underestimate attached biomass and fail to capture spatial heterogeneity. Although molecular and sensor-based technologies provide improved resolution, their farm-level implementation remains limited by cost, standardization challenges, and the absence of validated operational thresholds. Current EU surveillance frameworks focus primarily on antimicrobial use and resistance prevalence in animal isolates, while environmental compartments are rarely incorporated as monitored system elements. This review proposes a proportionate, risk-based approach that integrates existing farm data streams such as antimicrobial use metrics and biosecurity scoring systems with targeted environmental assessment of high-risk infrastructure. Mitigation strategies emphasize mechanical disruption, combined chemical sanitation, hydraulic optimization, material selection, and infrastructure lifecycle management. Embedding environmental biofilm control within existing engineering and stewardship frameworks supports more resilient, systems-based management of infectious and AMR risks in livestock production. Full article

Deammonification, which is based on partial nitritation and anammox (PN/A), is a well-established sidestream treatment for nitrogen removal. However, transferring deammonification to mainstream wastewater treatment remains challenging due to low temperatures, the need to retain slow-growing anammox bacteria (AnAOB), and their competition for nitrite with nitrite-oxidizing bacteria (NOB) and heterotrophic denitrifiers. This work investigates cubic polyurethane foam carriers to promote growth and retention of AnAOB. A moving bed biofilm reactor (MBBR) and an integrated fixed-film activated sludge (IFAS) reactor were compared over a three-year experimental period at lab-scale. The feasibility of the biofilm carriers for deammonification was first evaluated under sidestream conditions, followed by a stepwise transition to mainstream operational conditions. The impact of operational parameters, including dissolved oxygen concentration, pH value, and aeration strategy, was evaluated with respect to the activity of aerobic ammonium-oxidizing bacteria (AOB), NOB, and AnAOB, as well as nitrogen removal rates. Deammonification reached nitrogen removal rates of 0.04–0.12 kg N m⁻³ d⁻¹ (IFAS reactor) and 0.02–0.28 kg N m⁻³ d⁻¹ (MBBR) at subphases with reactor bulk concentrations above 60 mg NH₄-N L⁻¹. Highest nitrogen removal degrees of 77 ± 6% (IFAS) and 76 ± 5% (MBBR) were achieved at reactor bulk concentrations of 96 mg NH₄ L⁻¹ and 97 mg NH₄ L⁻¹, respectively. Lower concentrations triggered NOB activity in both reactors, leading to an increase in nitrate concentration up to 22 mg NO₃-N L⁻¹. AOB and AnAOB activities were on average 6-fold higher on the carriers compared to suspended biomass throughout all experimental phases, demonstrating the feasibility of using cubic polyurethane foam carriers for deammonification. This was also confirmed by fluorescence in-situ hybridization (FISH) measurements. Median nitrogen removal rates over all experimental phases of 0.07 kg N m⁻³ d⁻¹ for the IFAS reactor and 0.05 kg N m⁻³ d⁻¹ for the MBBR were achieved, which are comparable to conventional activated sludge systems performing nitrogen removal via nitrification–denitrification. While at lower nitrogen concentrations, the IFAS reactor yielded superior nitrogen removal rates, peak nitrogen removal rates of 0.28 kg N m⁻³ d⁻¹ were measured in the MBBR configuration. However, controlling NOB activity at lower temperatures and concentrations remains a challenge in MBBR and IFAS configurations. In our study, in the IFAS reactor NOB activities were visible on fewer days than in MBBR. At mainstream-like conditions, higher nitrogen removal rates of IFAS (0.09–0.12 kg N m⁻³ d⁻¹) were achieved compared to the MBBR (0.06–0.09 kg N m⁻³ d⁻¹). This demonstrates the advantage of the IFAS reactor in treating mainstream wastewater via deammonification. As an autotrophic nitrogen removal process, the implementation of deammonification in the mainstream of municipal wastewater treatment plants enables enhanced recovery of biogas from sewage organic matter. The latter would otherwise be consumed during the conventional nitrification-denitrification pathway. Consequently, the overall energy balance for wastewater treatment can be improved, contributing to a more environmentally sustainable process. Full article

Plastic pollution is ubiquitous in the environment, with microplastics (particles < 5 mm) a worldwide emergent contaminant of concern; however, no studies have explored historical patterns in freshwater macroinvertebrates in connection to species traits and changes in land use. We measured microplastics in macroinvertebrates collected from 1998–2019 at six forest, urban, and agriculture dominated streams in the Schuylkill River watershed (PA, USA). We selected representative macroinvertebrates that underwent peroxide oxidation digestion and were examined for microplastics under a dissecting microscope with Rose Bengal dye to confirm microplastic identification. Microplastics were present in 134 individuals across 24 taxa and all functional feeding groups (FFGs). Abundance of microplastics in macroinvertebrates decreased through time with an increase of agriculture land use, whereas microplastics increased with an increase of urban land use. Collector-gatherer FFG had the greatest microplastic abundance, which may be linked to Elmidae and Psephenidae (Coleoptera), which tended to have the highest abundances of microplastics compared to all other taxa in some years. This relationship may be explained by the feeding mode of these families of macroinvertebrates and that gathering particles in the water column and scraping particles from biofilms may be similarly effective in the acquisition of microplastics. Overall, understanding microplastic temporal patterns and their connections to species traits and variations in land and water use is critical to developing a predictive framework for explaining microplastic abundance in the environment and interactions with aquatic biota. Full article

Environmental DNA (eDNA) and environmental RNA (eRNA) are increasingly used in aquatic biomonitoring, but they serve different ecological purposes. eDNA can persist in biofilms, reflecting accumulated environmental signals, while eRNA is short-lived and indicates metabolically active communities. To assess their suitability for evaluating stream health, we compared benthic diatom assemblages derived from both eDNA and eRNA. Alpha diversity indices revealed negligible differences between the two nucleic acid types, although total read abundance showed a small effect size (Cliff’s δ = 0.207). Taxonomic overlap was significant, with 70% of species shared between the two sources, though several genera displayed source-specific patterns. Community analyses indicated that eRNA-based assemblages had greater internal consistency and clearer differentiation between groups. The Trophic Diatom Index application revealed that eDNA captured cumulative water quality conditions, while eRNA provided a more sensitive reflection of current ecological states. These findings highlight that eDNA offers broad taxonomic coverage, whereas eRNA delivers a higher resolution of active ecological responses. By integrating both markers, we can achieve a more comprehensive assessment of long-term environmental history and current stream health, enhancing the accuracy of diatom-based bioassessment frameworks. Full article

Volatile aromatic compounds (BTEX: benzene, toluene, ethylbenzene, and xylenes) are toxic and odor-active volatile organic compounds of environmental and health concern. Conventional biofiltration systems often rely on organic packing materials that deteriorate over time, motivating the evaluation of more durable inorganic alternatives. In this study, andesite, a volcanic rock, was assessed as a packing material in a laboratory-scale biotrickling filter (BTF) for the removal of BTEX from air streams. The reactor was operated under controlled conditions at different empty-bed residence times, and BTEX concentrations were monitored using TD-GC/MS. Removal performance was interpreted in relation to biofilm development, supported by physicochemical characterization of the packing material and contextual microbial analysis of the microbial community structure by amplicon sequencing. The results showed that the andesite-packed BTF achieved high BTEX removal efficiencies after an acclimation period, with stable operation under the tested conditions. Microbial analysis revealed the dominance of bacterial groups commonly associated with aerobic degradation of aromatic hydrocarbons. These findings indicate that andesite can function as a mechanically stable and biologically compatible inorganic support for BTEX treatment in biotrickling filters at the laboratory scale. The study is limited to bench-scale operation and community-level microbial analysis; therefore, further work is required to evaluate long-term performance, scale-up potential, and functional metabolic interactions. Full article

Headwater streams comprise almost 90% of global river networks, and their microorganisms play critical roles in organic matter decomposition and nutrient cycling. These functions, however, are affected by recurrent drying and rewetting. This study examined spatial variation in microbial enzyme activity tied to organic carbon degradation (β-glucosidase, phenol oxidase, and peroxidase) and nitrogen (N-acetylglucosaminidase) and phosphorus (phosphatase) mineralization in water, epilithic biofilm, leaf litter, and sediment in two intermittent streams: Gibson Jack Creek (Idaho, USA) and Pendergrass Creek (Alabama, USA), representing different climactic and physiographic settings. Microbial activity was greater in Gibson Jack Creek, where the activity of leaf litter enzymes varied along the stream network, and there were strong correlations in microbial activity between different stream habitats. Microbial activity in Pendergrass Creek showed primarily within-habitat associations. Activity in water, sediment, and biofilm showed broader spatial heterogeneity in both stream networks. Ratios of microbial activity (enzyme stoichiometry) suggested that microbial communities in both systems were primarily limited by carbon and phosphorus, although there was more spatial variation in nitrogen limitation, particularly in water and sediment at Pendergrass Creek and in biofilm at Gibson Jack Creek. These findings underscore the spatial heterogeneity and environmental sensitivity of microbial processes in intermittent streams. Full article

Background/Objectives: Klebsiella spp., particularly K. pneumoniae, are major opportunistic pathogens in healthcare settings driven by carbapenemase- and ESBL-producing strains. We assessed antimicrobial resistance and biofilm formation abilities in Klebsiella spp. from a Brazilian tertiary hospital and related environments and characterized capsular types. Methods: Over six months (July–December 2023), 303 carbapenem-resistant Klebsiella spp. were collected from clinical specimens (n = 198), ICU/non-ICU surfaces (n = 79), hospital sewage (n = 22), and stream water (n = 4). Species were identified by MALDI-TOF. Susceptibility testing covered eight antibiotic classes, focusing on carbapenems and polymyxin B. Biofilm formation was quantified by crystal violet, and capsular typing used wzi/K-locus approaches. Results: Most isolates (70.95%) had meropenem MICs ≥ 128 μg/mL, while 77.6% (n = 235) remained susceptible to polymyxin B. Resistance profiles largely consisted of extensive drug resistance (95.4%), with 1.3% exhibiting pandrug resistance, including isolates from bed rails. Biofilm formation was detected in 96.7% of isolates, mainly weak (67.6%) or moderate (28%), with 4.4% being strong producers. Among the Klebsiella isolates analyzed, 21 K types were identified with an uneven distribution dominated by K64, followed by K24, K173, and K50. K75 was the only K type detected across all sources—clinical isolates, bed-rail surfaces (non-ICU), wastewater, and fluvial water. Conclusions: Carbapenem-resistant Klebsiella spp. exhibited widespread resistance, with residual susceptibility to aminoglycosides, ceftazidime–avibactam, and polymyxins. Environmental reservoirs—hospital surfaces, sewage, and stream water—harbored resistant biofilm producers, reinforcing their role in persistence and dissemination. K-typing revealed concentrated distribution (predominantly K64) and cross-source K75. These findings underscore the urgency of integrated strategies combining molecular surveillance, antimicrobial stewardship, and environmental control. Full article

Rambutan (Nephelium lappaceum) shell, an agro-industrial by-product, is a rich source of phenolic acids and minor anthocyanins, but its direct use is limited by instability and low bioavailability. We extracted phenolic-rich fractions and produced maltodextrin microcapsules by spray drying, then confirmed chemical entrapment and amorphization by FTIR, SEM, and XRD. The formulation showed high encapsulation efficiency and high antioxidant capacity (DPPH), selective bactericidal activity against Pseudomonas aeruginosa and Burkholderia cepacia, and strong inhibition of Staphylococcus aureus and Listeria monocytogenes biofilms, while exhibiting negligible hemolysis (<2%) across tested concentrations. Antitumor effects were moderate with low selectivity in vitro, indicating that phenolic-acid-driven redox modulation may require fractionation or delivery optimization for oncology applications. Overall, spray-dried microcapsules provided structural stability and safety while concentrating multifunctional activities relevant to food and biomedical uses. By valorizing a tropical waste stream into a bioactive, hemocompatible ingredient, this work aligns with societal goals on health and sustainable production (SDG 3 and SDG 12) and offers a scalable route to deploy underutilized phenolic resources. Full article

Filtrate from dewatering anaerobically digested biosolids is a side-stream of wastewater treatment that contains high concentrations of nitrogen and phosphorus compounds that can serve as nutrients for cultivating microalgae biomass as biofilms for bioproduct production at Water Resource Recovery Facilities (WRRFs). One system used to cultivate attached microalgae biofilms is the rotating algal biofilm reactor (RABR). A pilot RABR with 72 m² growth surface area, 11.5 m² footprint area, and a liquid volume of 11,500 L was operated in an outdoor environment at the largest WRRF in Utah, U.S.A, the Central Valley Water Reclamation Facility (CVWRF). The configuration of the RABR was altered from the previous configuration with regard to temperature and duty cycle with the goal to maximize biomass productivity. Results included an increase in dry biomass productivity on a footprint basis from 8.8 g/m²/day to 26.8 g/m²/day (205%) while power requirements changed from 28.3 W to 91 W. The increase in biomass productivity has direct benefits for bioproducts including bioplastic, biofertilizer, and the extraction of lipids for conversion to biofuels. Full article

The hyporheic zone functions as a critical interface mediating hydrological and biogeochemical exchanges between stream water and streambed. Within shallow streambed layers, sediment transport and biofilm colonization can induce dynamic layered clogging, alter hydraulic conductivity, and foster physical stratification that significantly modulates hyporheic exchange patterns. This study develops a coupled hydrodynamic–mass transport model for a representative streambed bedform to examine the impacts of biofilm-driven dynamic clogging on hyporheic exchange dynamics. Results reveal that dynamic layered clogging reduces pore water velocity and total water flux, causing a 45.1% decline in the total inflow to the hyporheic zone. The transport of non-absorbable solutes exhibits a biphasic pattern: initial rapid penetration transitions to gradual deceleration over time, with dynamic clogging extending the penetration time of the solute center of mass distribution (CMD). Notably, when hydraulic conductivity falls below a threshold (K* < 0.25), CMD penetration time exhibits a positive correlation with hydraulic conductivity, attributed to porosity-induced changes in actual flow velocity. When considering the anaerobic growth in deeper layers, the penetration time become longer because of the clogging present there. This research clarifies the mechanistic connections between biofilm-induced clogging and hyporheic exchange, providing valuable insights for the management of hyporheic ecosystems and the modeling of biogeochemical processes. Full article

This study explores the feasibility of producing biohydrogen from winery wastewater using a dual-chamber microbial electrolysis cell (MEC). A mixed microbial consortium pre-adapted to heavy-metal environments and enriched with Geobacter sulfurreducens was anaerobically cultivated from diverse waste streams. Over 5000 h of development, the MEC system was progressively adapted to winery wastewater, enabling long-term electrochemical stability and high organic matter degradation. Upon winery wastewater addition (5% v/v), the system achieved a sustained hydrogen production rate of (0.7 ± 0.3) L H₂ L⁻¹ d⁻¹, with an average current density of (60 ± 4) A m⁻³, and COD removal efficiency exceeding 55%, highlighting the system’s resilience despite the presence of inhibitory compounds. Coulombic efficiency and cathodic hydrogen recovery reached (75 ± 4)% and (87 ± 5)%, respectively. Electrochemical impedance spectroscopy provided mechanistic insight into charge transfer and biofilm development, correlating resistive parameters with biological adaptation. These findings demonstrate the potential of MECs to simultaneously treat agro-industrial wastewaters and recover energy in the form of hydrogen, supporting circular resource management strategies. Full article

Volatile organic compounds (VOC) are major contributors to the burgeoning air pollution issue, predominantly from industrial areas, with well-documented environmental and health risks, which demand efficient and sustainable control policies. This review analyzes the current technological challenges and investigates recent developments in biological treatment technologies for VOC-contaminated off-gases, including biofilters, biotrickling filters, and bioscrubber, as well as emerging technologies, such as bioaugmentation and microbial fuel cells (MFCs). Operational performance, economic feasibility, and adaptability to various industrial applications are assessed, alongside opportunities for integration with other technologies, including energy recovery technologies. Biological systems offer considerable advantages regarding cost savings and lower environmental impacts and enhanced operational flexibility, particularly when combined with innovative materials and microbial optimization techniques. Nevertheless, challenges persist, such as choosing the best treatment settings suited to different VOC streams and addressing biofilm control concerns and scalability. Overall, biological VOC treatments are encouraging sustainable solutions, though continued research into reactor design, microbial dynamics, and MFC-based energetic valorization is essential for broader industrial application. These insights cover advancements and highlight the continuous need for innovative prowess to forge sustainable VOC pollution control. Full article

Objectives: The synergistic effect of shock wave-enhanced emission photoacoustic streaming (SWEEPS) and antimicrobial photodynamic therapy (aPDT) in mandibular molar root canal disinfection remains underexplored, particularly against dual-species biofilms that better simulate clinical conditions. This study evaluates their combined antimicrobial efficacy against Enterococcus faecalis and Candida albicans biofilms and assesses potential tooth discoloration caused by riboflavin and nano-curcumin. Materials and Methods: The mesiobuccal canals of 57 extracted mandibular molars were inoculated with E. faecalis and C. albicans biofilms. The antimicrobial effects were assessed using riboflavin or nano-curcumin with a 450 nm diode laser (BDL), SWEEPS, or their combinations, compared to 5.25% NaOCl (positive control) and saline (negative control). Biofilm reduction was quantified by colony-forming units (CFUs/mL), and discoloration was evaluated using the ΔE metric in the CIE L*a*b* color space. Results: Both microorganisms showed a significant decrease in colony numbers in all experimental groups compared to the negative control (p < 0.001), except for E. faecalis, where no significant difference was observed between the riboflavin/nano-curcumin groups and the negative control. Combining riboflavin or nano-curcumin with SWEEPS or BDL significantly enhanced antimicrobial efficacy compared to individual treatments (p < 0.001). The combined photodynamic therapy and SWEEPS groups showed the lowest colony counts. The ΔE values were, on average, 1.81 for riboflavin and 1.09 for nano-curcumin. Conclusions: The combination of SWEEPS and aPDT effectively reduces E. faecalis and C. albicans biofilms in molars, supporting its potential as an adjunct in endodontic disinfection. Minimal discoloration further highlights its clinical applicability. Full article

Background: The quest for minimally invasive disinfection in endodontics has led to using Erbium:Yttrium-Aluminum-Garnet (Er:YAG) lasers. Conventional approaches may leave bacterial reservoirs in complex canal anatomies. Er:YAG’s strong water absorption generates photoacoustic streaming, improving smear layer removal with lower thermal risk than other laser systems. Methods: This systematic review followed PRISMA 2020 guidelines. Database searches (PubMed/MEDLINE, Embase, Scopus, Cochrane Library) identified studies (2015–2025) on Er:YAG laser-assisted root canal disinfection. Fifteen articles met the inclusion criteria: antibacterial efficacy, biofilm disruption, or smear layer removal. Data on laser settings, irrigants, and outcomes were extracted. The risk of bias was assessed using a ten-item checklist, based on guidelines from the Cochrane Handbook for Systematic Reviews of Interventions. Results: All studies found Er:YAG laser activation significantly improved root canal disinfection over conventional or ultrasonic methods. Photon-induced photoacoustic streaming (PIPS) and shock wave–enhanced emission photoacoustic streaming (SWEEPS) yielded superior bacterial reduction, especially apically, and enabled lower sodium hypochlorite concentrations without sacrificing efficacy. Some research indicated reduced post-operative discomfort. However, protocols, laser parameters, and outcome measures varied, limiting direct comparisons and emphasizing the need for more standardized, long-term clinical trials. Conclusions: Er:YAG laser-assisted irrigation appears highly effective in biofilm disruption and smear layer removal, supporting deeper irrigant penetration. While findings are promising, further standardized research is needed to solidify guidelines and confirm Er:YAG lasers’ long-term clinical benefits. Full article

Pseudomonas aeruginosa, an opportunistic pathogen, causes various biofilm-associated infections like pneumonia, infections in cystic fibrosis patients, and urinary tract and burn infections with high morbidity and mortality, as well as low treatment efficacy due to the extremely wide spread of isolates with multidrug resistance. Here, we report the new bacteriophage Pseudomonas phage Ka2 isolated from a tributary stream of Lake Baikal and belonging to the Pbunavirus genus. Transmission electron microscopy resolved that Pseudomonas phage Ka2 has a capsid of 57 ± 9 nm and a contractile and inflexible tail of 115 ± 10 nm in the non-contracted state. The genome consists of 66,310 bp with a GC content of 55% and contains 96 coding sequences. Among them, 52 encode proteins have known functions, and none of them are potentially associated with lysogeny. The bacteriophage lyses 21 of 30 P. aeruginosa clinical isolates and decreases the MIC of amikacin, gentamicin, and cefepime up to 16-fold and the MIC of colistin up to 32-fold. When treating the biofilms with Ka2, the biomass was reduced by twice, and up to a 32-fold decrease in the antibiotics MBC against biofilm-embedded cells was achieved by the combination of Ka2 with cefepime for the PAO1 strain, along with a decrease of up to 16-fold with either amikacin or colistin for clinical isolates. Taken together, these data characterize the new Pseudomonas phage Ka2 as a promising tool for the combined treatment of infections associated with P. aeruginosa biofilms. Full article