Search Results (457)

In this study we employed nanopore whole genome sequencing to analyze the resistance genes, genomic islands and prophage DNA in two multidrug resistant E. rhusiopathiae strains, i.e., 670 and 147, isolated from domestic geese. MLST profiles and core-genome phylogeny were determined to assess strain relatedness. In strain 670 (serotype 8, ST 113), a novel 53 kb prophage φEr670 carrying the lnuB and lsaE resistance genes was identified. Regions highly homologous to the φEr670 prophage were detected in 36 of 586 (6.14%) publicly available E. rhusiopathiae genomes, as well as in some other Gram-positive bacteria, and usually contained resistance genes. E. rhusiopathiae strain 147 (serotype 5, ST 243) was found to contain a composite 98 kb genomic island (GI_Er147) carrying the ant(6)-Ia and spw genes, as well as gene encoding a putative lincosamide nucleotidyltransferase designated lnu(J) and a vat family gene encoding a putative streptogramin A O-acetyltransferase. The lnu(J) gene exhibited 83.6% homology to the lnu(D) gene, and lnu(J)-positive E. rhusiopathiae strains displayed intermediate susceptibility to lincomycin. Vat-positive strain 147 and vat-negative E. rhusiopathiae strains showed similar susceptibility to quinupristin/dalfopristin. The presence of the Tn916 transposon carrying the tetM gene was confirmed in the genomes of both E. rhusiopathiae strains; in strain 147, however, Tn916 was located within ICEEr1012. Based on analyses of additional E. rhusiopathiae genomes, the integration sites of Tn916, ICEEr1012, and GI_Er147 were identified as genomic “hot spots,” contributing to the genome plasticity of E. rhusiopathiae. Prophage φEr670 and GI_Er147 as well as the Tn916 transposon and ICEEr1012 are most likely responsible for the dissemination of resistance genes in E. rhusiopathiae. Prophages highly homologous to φEr670 act as carriers of resistance genes in various Gram-positive bacteria. However, the transferability of the identified genetic elements and the functional role of the lnu(J) gene require further investigation. This study provides new insights into the diversity of MGEs in E. rhusiopathiae and advances understanding of the genomic mechanisms driving antimicrobial resistance in Gram-positive bacteria. Full article

Coupling microbial catalysis with electrochemical stimulation offers a promising strategy for heavy metal remediation. This study investigates how potentiostatic control influences the bioreduction of hexavalent chromium (Cr(VI)) by Bacillus cereus strain DIF1 in a bioelectrochemical system. Cr(VI) reduction was evaluated under various applied cathodic potentials, and the highest reduction efficiency (91.45%) was achieved at +0.04 V after 24 h. This performance significantly surpassed that of the abiotic control (82.55%) and the open-circuit biotic control (9.25%), indicating that the applied potential enhances microbial Cr(VI) reduction beyond contributions from abiotic processes alone. Cyclic voltammetry (CV) revealed a distinct redox feature at +0.04 V with no corresponding reverse peak, indicating kinetically favored electron transfer during Cr(VI) reduction under this condition. Microscopic imaging confirmed that, under the applied potential, Bacillus cereus DIF1 formed filamentous connections, exhibited higher chromium accumulation on bacterial cells than on the surrounding carbon paper electrode, and developed a robust biofilm on the cathode surface. The system maintained consistent Cr(VI) reduction performance over three consecutive cycles, demonstrating good short-term operational reproducibility. These findings highlight the critical role of precise electrochemical control in modulating microbial Cr(VI) reduction and provide mechanistic insights into the interplay between electrode potential and bacterial activity. Full article

Buried pipelines represent critical lifeline infrastructure whose seismic performance is governed by complex soil–structure interaction mechanisms. In this study, a process-based numerical framework is developed to evaluate the pseudo-static seismic response of buried steel pipelines installed within a trench. A comprehensive parametric analysis is conducted using the finite-element software Rocscience RS2 (version 11.027) to examine the influence of burial depth, pipeline diameter, slope angle, groundwater level, soil type, and permanent ground deformation. The seismic loading was represented using a pseudo-static horizontal acceleration, which approximates permanent ground deformation rather than full dynamic wave propagation. Therefore, the results represent simplified lateral seismic demand and not the complete dynamic soil–structure interaction response. To verify the reliability of the 2D plane–strain formulation, a representative configuration is re-simulated using the fully three-dimensional platform Rocscience RS3. The comparison demonstrates excellent agreement in shear forces, horizontal displacements, and cross-sectional distortion patterns, confirming that RS2 accurately reproduces the dominant load-transfer and deformation mechanisms observed in three-dimensional (3D) models. Results show that deeper burial and stiffer soils increase shear demand, while higher groundwater levels and larger permanent ground deformation intensify lateral displacement and cross-sectional distortion. The combined 2D–3D evaluation establishes a validated computational process for predicting the behavior of buried pipelines under a pseudo-static lateral load and provides a robust basis for engineering design and hazard mitigation. The findings contribute to improving the seismic resilience of lifeline infrastructure and offer a validated framework for future numerical investigations of soil–pipeline interaction. Full article

With the increasing functional and geometric complexity of modern steel buildings, irregular-shaped beam-to-column joints are becoming common in engineering practice. However, their seismic behavior remains insufficiently understood, particularly for configurations with geometric asymmetry and complex stress transfer mechanisms. This study experimentally investigates the seismic performance of irregular steel-beam-to-concrete-filled steel tube (CFST) column joints incorporating inclined internal diaphragms (IIDs), taking unequal-depth beam (UDB) and staggered beam (SB) joints as representative cases. Two full-scale joint specimens were designed and tested under cyclic loading to evaluate their failure modes, load-bearing capacity, stiffness/strength degradation, energy dissipation capacity, strain distribution, and panel zone shear behavior. Both joints exhibited satisfactory strength and initial stiffness. Although diaphragm fracture occurred at approximately 3% drift, the joints retained 45–60% of their peak load capacity, based on the average strength of several loading cycles at the same drift level after diaphragm failure, and maintained stable hysteresis with average equivalent damping ratios above 0.20. Final failure was governed by successive diaphragm fracture followed by the tearing of the column wall, indicating that the adopted diaphragm thickness (equal to the beam flange thickness) was insufficient and that welding quality significantly affected joint performance. Refined finite element (FE) models were developed and validated against the test responses, reasonably capturing global strength, initial stiffness, and the stress concentration patterns prior to diaphragm fracture. The findings of this study provide a useful reference for the seismic design and further development of internal-diaphragm irregular steel-beam-to-CFST column joints. Full article

Legionella pneumophila, a waterborne pathogen naturally present in freshwater and capable of colonizing artificial water systems, is responsible for Legionnaires’ disease (LD), a severe form of pneumonia transmitted through inhalation of contaminated aerosols. Virulence of Legionella strains is affected by the plasticity of their genome, shaped by horizontal gene transfer and recombination events. Thus, contaminated water systems can host diverse Legionella populations with a distinct virulence potential. Here, we compare the genomic diversity of Legionella pneumophila strains isolated in water systems of academic buildings, together with their cytotoxicity and intracellular replication in THP-1-like macrophages. A six-year environmental surveillance revealed Legionella pneumophila contamination in 20 out of the 50 monitored sites, identifying five serogroups (sg) and 13 Sequence Types (STs). Phylogenetic investigations based on core genome multilocus sequence typing (cgMLST) and comparative genomics of representative isolates of each ST showed a broad diversity and a heterogeneous virulence repertoire, especially within the Dot/Icm and Lvh secretion systems. Following macrophage infection, a strain-dependent cytotoxicity and intracellular replication was observed, underlying significant pathogenic diversity within the same species and stage-dependent infection dynamics. Together, these results showed strain-specific genetic and phenotypic virulence traits to be considered during risk assessment in environmental surveillance. Full article

There is evidence that mast cells contribute to skeletal response to injury, but it is less clear whether these immune cells directly influence normal bone growth and turnover. Mature mast cells are common in the bone marrow of humans and rats, but have not been convincingly demonstrated to be present in the bone marrow of healthy mice, potentially limiting the mouse as a model for characterizing the full range of mast cell/bone cell interactions. An initial goal of this investigation was to comprehensively screen seven strains of mice for mature mast cells in bone marrow. Finding none, we then investigated three approaches to home these cells to the marrow of mice unable to generate mast cells: (1) administration of soluble kit ligand to membrane kit ligand-deficient Kit^Sl/Sld mice, (2) adoptive transfer of wild-type hematopoietic stem cells to kit receptor-deficient Kit^W/W−v mice, and (3) adoptive transfer of wild-type mouse bone marrow-derived mast cells generated in vitro and delivered intravenously to Kit^W/W-v mice. Only the third approach was successful. Using this method, we then evaluated the impact of bone marrow-derived mast cells on bone mass, architecture, turnover, and gene expression. The adoptive transfer of mast cells resulted in alterations in cancellous bone microarchitecture and cell populations in the vertebra, and in differential expression of genes associated with bone metabolism in the tibia. Taken together, our results support the concept that bone marrow mast cells influence bone metabolism and suggest that homing mast cells to the bone marrow of mice is a useful model to understand the role of these cells in skeletal health and disease. Full article

In deep coal mining, fault slip-type rockbursts occur frequently. Understanding the shear mechanical properties of bedded coal seams and their intrinsic mechanisms is crucial. This study used PFC^2D7.0 numerical simulation to systematically investigate the shear mechanical behavior and micro-mechanisms of bedded coal under different normal stresses (1, 2, 3, 4 MPa). The research results show that: (1) The shear stress-displacement curves of bedded coal show three stages: elastic rise, strain softening, and residual stability. Both peak and residual shear strengths increase with the rise in normal stress. The peak strength shows nonlinear growth, while the residual strength exhibits a good linear relationship. Higher normal stress significantly reduces the strength reduction rate and effectively inhibits the brittleness of coal. (2) The failure mode consistently manifests as shear failure along the preset weak bedding plane, forming a distinct shear zone. Crack evolution analysis shows that shear cracks within the bedding are the primary form of damage, with minimal contribution from tensile cracks. (3) Force chain analysis shows that an increase in normal stress significantly enhances the density and connectivity of compressive force chains within the shear zone. It also effectively inhibits tensile force chains, with the bedding plane consistently serving as the primary area for stress concentration and transfer. This study provides important theoretical references for understanding the shear instability mechanism of bedded coal, predicting its mechanical response, and preventing fault slip-type rockbursts in deep coal mines. Full article

The impact of zinc oxide (ZnO) nanoparticles on the dispersion, rheological behaviour, and mechanical properties of epoxy-based composites was investigated. Through experimental examinations, we found that 100 nm ZnO with a 4 wt.% content, when incorporated into epoxy, demonstrated homogeneous dispersion. Conversely, an increase in ZnO nanoparticle content led to particle agglomeration within the composite’s core. Rheology tests revealed that the 4 wt.% ZnO/epoxy mixture exhibited the lowest shear stress value, surpassing even the neat epoxy. Additionally, theoretical models were employed to evaluate the stress–strain properties of the ZnO/epoxy with the hollow glass fibre composite system. The study demonstrates the critical role of ZnO nanoparticle content in achieving dispersion and mechanical strength without the need for chemical solvents or surface modifications. Furthermore, variations in ZnO content within the composite resulted in a differing Young’s Modulus and UV absorbability, highlighting the importance of nanoparticle concentration in determining material properties. The study also delves into the effects of core diameter, length of hollow glass fibres (HGF), and adhesive layer thickness on stress transfer and strain deformation mechanisms within the composite system. Full article

The operational integrity of L415 pipeline steel, a critical component of China’s energy network, is severely threatened by the unique acidic red soil environments prevalent in Southern China. A significant knowledge gap exists regarding its specific failure mechanisms, particularly the interplay between Anodic Dissolution (AD) and Hydrogen Embrittlement (HE) in driving Stress Corrosion Cracking (SCC). This study systematically investigates the corrosion and SCC behavior of L415 steel in a simulated environment that replicates the typical soil chemistry of the Gannan region in Southern China. Results revealed that corrosion kinetics are highly dependent on environmental chemistry, with corrosion rates escalating nearly four-fold from 0.0505 mm/a to a severe 0.1949 mm/a, driven by the synergy of low pH and high SO₄²⁻ concentration. This behavior is governed by the integrity of the corrosion product film, where aggressive environments form porous, unprotective layers with low charge transfer resistance. Slow strain rate tensile (SSRT) tests confirmed that the steel’s susceptibility to SCC is strongly promoted by acidity. Critically, the dominant SCC mechanism was environment-dependent, transitioning from Hydrogen Embrittlement (HE) to intergranular cracking in the most acidic environment, and a mixed AD-HE mechanism causing transgranular cracking in high-chloride conditions. These findings provide a direct mechanistic link between soil chemistry and failure mode, offering a crucial scientific basis for developing environment-specific integrity management strategies for pipelines in these challenging terrains. Full article

Reducing the Schottky barrier at the metal–semiconductor interface and achieving Ohmic contact is crucial for the development of high-performance Schottky field-effect transistors. This paper investigates the stability, interface interactions, interlayer charge transfer, and types of Schottky contacts in the graphene/ZnSe heterostructure structure using first-principles methods. It employs biaxial strain as a control mechanism. The results indicate that applying compressive strain increases the barrier and band gap while maintaining n-type contact; whereas tensile strain reduces the n-type barrier to negative values, inducing Ohmic contact and decreasing the band gap. The findings of this study will provide theoretical references for the design and fabrication of field-effect transistors, photodetectors, and other optoelectronic devices. Full article

The rapid growth of on-demand services in Sub-Saharan Africa has intensified reliance on internal combustion engine (ICE) motorcycles for last-mile delivery, with Cape Town exemplifying both the opportunities and challenges of this trend. While motorcycles provide affordable and flexible mobility, their disproportionate emissions, high operating costs, and exposure to volatile fuel prices create pressing economic and environmental concerns. This paper investigates the implications of electrifying Cape Town’s last-mile delivery fleet by modelling the operational dynamics of 39,005 delivery trips performed by 385 motorcycles. Using empirical data, the study simulates fleet electrification under two battery-swapping scenarios—daytime swapping only and a hybrid swapping plus overnight charging model—while testing unmanaged and managed charging strategies. Results show that downsizing the fleet could reduce system resources by more than 50%, lowering capital and grid burdens, with managed charging offering long-term operational savings. Managed charging approaches, particularly off-peak balancing and solar-following, successfully mitigate grid strain and enhance solar utilisation, though they demand larger battery pools, a trade-off quantified by a techno-economic analysis. Crucially, pairing electrification with decentralised solar generation demonstrates the potential for a resilient, net-zero system insulated from load shedding. The findings provide a transferable framework for African cities to decarbonise urban logistics while safeguarding rider livelihoods and grid stability. Full article

Avian pathogenic Escherichia coli (APEC) causes avian colibacillosis, a disease responsible for high morbidity and mortality in commercial poultry flocks, leading to devastating economic losses to the poultry industry worldwide. APEC may also act as a source of virulence and antibiotic resistance genes that can be transferred to other Escherichia coli pathotypes. Therefore, this study aimed to determine the serotypes, phylogenetic background, virulence genes, and antibiotic resistance profiles of APEC in Algeria. A total of 98 APEC strains were isolated from chicken samples with characteristic colibacillosis signs between 2019 and 2020. O-serotyping identified O157 (20.41%) and O78 (11.22%) as the predominant serotypes. The isolates were classified into groups B1 (43.87%), C (29.59%), A (12.24%), E (7.14%), F (5.10%), and B2 (2.04%). Virulence gene analysis revealed that among the 31 genes investigated, a high occurrence of mat, crlA (100% each), yijP (98.98%), fimC, ibeB, ompA (97.96% each), iucD (89.80%), iroN (81.63%), iss (80.61%), and eae (79.59%) was observed. The highest resistance rates were found for ampicillin (97.96%), amoxicillin–clavulanic acid (96.94%), nalidixic acid (94.90%), tetracycline (90.82%), and ciprofloxacin (79.59%). Additionally, 92.86% of APEC isolates were resistant to three or more antibiotics, reflecting extensive antimicrobial use in Algerian poultry farms and highlighting a major challenge for animal health management and a potential risk of zoonotic transmission. Our data provide valuable insights into the characteristics of the APEC populations in broiler chickens in Algeria. This may assist in understanding APEC pathogenesis and in developing effective control strategies. Full article

Background/Objectives: Antimicrobial resistance (AMR) in Klebsiella pneumoniae poses a serious threat to healthcare, especially in sub-Saharan Africa (SSA). To complement AMR infection control in Kenya, here, clinical and environmental genomes were investigated to determine the potential roles prophages play in K. pneumoniae pathogenicity. Methods: Prophages were extracted from 89 Kenyan K. pneumoniae genomes. The intact prophages were examined for virulence genes carriage, and their phylogenetic relationships were established. Results: Eighty-eight (~99%) of the genomes encode at least a single prophage, and there is an average of four prophages and 2.8% contributory genomes per bacterial strain. From the 364 prophages identified, 250 (68.7%) were intact, while 58 (15.9%) and 57 (15.7%) were questionable and incomplete, respectively. Approximately, 30% of the intact prophages encode 38 virulence genes that are linked to iron uptake (8), regulation (6), adherence (5), secretion system (4), antiphagocytosis (4), autotransporter (4), immune modulation (3), invasion (2), toxin (1) and cell surface/capsule (1). Phylogenetic analyses revealed three distinct clades of the intact prophages irrespective of their hosts, sources and locations, which support the plasticity of the genomes and potential to mediate horizontal gene transfer. Conclusions: This study provides first evidence showing the diverse prophages that are encoded in K. pneumoniae from SSA with particular focus on Kenyan strains. This also shows the potential roles these prophages play in the pathogenicity and success of K. pneumoniae and could improve knowledge and complement control strategies in the region and across the globe. Further work is needed to show the expression of these genes through lysogenisation. Full article

The Ni/Al₂O₃ interface bears the load transfer and energy dissipation, which determines the service performance of the composite materials. In this study, three distinct vacancy-defect-modified interface models (D₁, D₂, and D₃, corresponding to vacancies in the first, second, and third layers of the Ni substrate surface, respectively) were constructed to systematically investigate the regulatory mechanism of vacancies on interfacial stability. The underlying mechanism of vacancy-enhanced interfacial stability was elucidated from both atomic-scale structural and electronic property perspectives. The results demonstrate that the D₁, D₂, and D₃ structures increase the adhesion work of the interface by 2.0%, 6.7%, and 0.3%, respectively. This enhancement effect mainly stems from vacancy-induced atomic relaxation at the interface, which optimizes the equilibrium interfacial spacing and effectively releases residual strain energy. Further electronic structure analysis reveals a notable increase in charge density at the vacancy-modified interface (particularly in the D₂ structure), indicating that vacancy defects promote charge transfer and redistribution by altering local electron distribution. More importantly, the bonding strength of the interface exhibits a positive correlation with electron orbital hybridization intensity, where stronger s-, p-, and d-orbit hybridization directly leads to a more stable interface. These findings provide atomic- and electronic-scale insights into the mechanistic role of vacancy defects in governing bonding at the Ni/Al₂O₃ interface. Full article

Clostridium perfringens is responsible for various diseases. Foodborne outbreaks (FBOs) result from the in situ production of C. perfringens enterotoxin (CPE) by type F strains during sporulation. The cpe gene can be plasmidic (p-cpe) or chromosomal (c-cpe). Strains (c-cpe) exhibit greater heat resistance and are frequently associated with FBO. Strains cpe-negative are considered heat-sensitive. This study investigates the sporulation abilities and heat resistance of eight C. perfringens strains isolated from French foodborne outbreaks. Whole-genome sequencing classified the strains into two clades: the “chromosomal cpe clade,”, mainly composed of cpe-positive strains with c-cpe and some cpe-negative strains, and the “plasmidic cpe clade,”, primarily containing cpe-negative strains and a few with plasmid-borne cpe. Sporulation assays and thermal inactivation kinetics were performed on FBO strains to evaluate the influence of genetic variability on sporulation abilities and heat resistance. Experimental analyses revealed that strains within the “chromosomal cpe clade” exhibited the highest sporulation abilities, regardless of cpe presence, while those in the “plasmidic cpe clade” had low sporulation ability. Moreover, heat-resistant spores were produced exclusively by strains of the “chromosomal cpe clade,” with c-cpe strains exhibiting the highest heat resistance (δ_{95 °C} ≈ 49 min), followed by cpe-negative strains (δ_{95 °C} ≈ 9.5 min). p-cpe strains exhibited a heat-sensitive phenotype, with δ_{85 °C} values of 12 min. A key finding of this study is the identification of a group with intermediate heat resistance, distinct from the highly heat-resistant (c-cpe) and heat-sensitive (p-cpe) strains. This intermediate heat-resistance phenotype, observed in cpe-negative strains within the “chromosomal cpe clade,” offers a new perspective on C. perfringens stress adaptation, suggesting their potential for persistence in food. Their heat resistance, along with the potential for cpe gene transfer, could make these strains a relevant hazard for cooked, cooled, and re-heated meat products. Full article