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Keywords = stable compound fertilizer

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21 pages, 9756 KB  
Article
Spatiotemporal Assessment and Obstacle Diagnosis of Cultivated Land Quality Under Rapid Urbanization: Evidence from Chengdu, China
by Huaifei Ouyang, Yisen Liu, Xinyue Peng, Yixi Zhu, Jiayan Li and Yongheng Rao
Land 2026, 15(7), 1203; https://doi.org/10.3390/land15071203 - 5 Jul 2026
Viewed by 321
Abstract
Conventional static approaches to cultivated land quality (CLQ) assessment often fail to capture the rapid spatial restructuring of cultivated land in urbanizing regions. This study takes Chengdu, China, as the study area and employs multi-source and multi-indicator datasets from 2010, 2017, and 2023 [...] Read more.
Conventional static approaches to cultivated land quality (CLQ) assessment often fail to capture the rapid spatial restructuring of cultivated land in urbanizing regions. This study takes Chengdu, China, as the study area and employs multi-source and multi-indicator datasets from 2010, 2017, and 2023 to assess CLQ using an integrated AHP-CRITIC weighting approach, combined with obstacle degree and constraint factor analyses. The results show that the mean CLQ score increased from 0.520 in 2010 to 0.695 in 2023, reflecting the continuous improvement in stable cultivated land quality. Constraint factors also shifted from natural endowment limitations to engineering- and management-related disturbances: converted land was mainly constrained by climatic and topographic conditions, newly added land by soil moisture and fertility after land-use conversion, and stable land by compound soil-water and terrain constraints. These findings provide scientific evidence and practical references for high-standard farmland construction and refined cultivated land governance in rapidly urbanizing grain-producing regions. Full article
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15 pages, 1445 KB  
Article
Effects of One-Time Long-Term Application of Organic–Inorganic Compound Fertilizer on Wheat Photosynthetic Characteristics, Soil Properties and Grain Yield
by Xiaolin Zhou, Hongjie Li, Huali Gao, Mengyang Du, Yuxia Wang, Tongkai Zhao, Wei Wang and Zishuang Li
Agronomy 2026, 16(13), 1250; https://doi.org/10.3390/agronomy16131250 - 29 Jun 2026
Cited by 1 | Viewed by 375
Abstract
Wheat production demands simplified fertilization strategies to achieve sustainable high yields. This study evaluated the effects of the one-time high-rate application of an organic–inorganic compound fertilizer on soil properties, photosynthetic characteristics, and grain yields. A multi-year field experiment was conducted with a single [...] Read more.
Wheat production demands simplified fertilization strategies to achieve sustainable high yields. This study evaluated the effects of the one-time high-rate application of an organic–inorganic compound fertilizer on soil properties, photosynthetic characteristics, and grain yields. A multi-year field experiment was conducted with a single basal application of an organic–inorganic compound fertilizer at 3600 kg·ha−1, using conventional split chemical fertilization as the control. Compared with the control, this treatment significantly increased soil organic matter and available nutrient content, enhanced the bacteria/fungi ratio, elevated soil enzyme activity, and promoted the conversion of humus into more stable forms. These improvements sustained a higher flag leaf photosynthetic capacity during the grain-filling stage and delayed leaf senescence. The multi-year average grain yield was 5.28% higher than that of conventional split fertilization. The one-time high-rate application of an organic–inorganic compound fertilizer can improve soil biological properties, maintain late-season photosynthetic function, and increase yields, serving as an effective technical measure for simplified, sustainable, and high-yield wheat cultivation in the region. Full article
(This article belongs to the Section Plant-Crop Biology and Biochemistry)
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16 pages, 3527 KB  
Article
Effects of Biochar-Based and Conventional Sheep Manure Organic Fertilizers on Soil Properties and Microbial Communities in a Moso Bamboo (Phyllostachys edulis) Forest in China
by Zhe Chen, Daomin Chen, Weiqing Qiu, Liangjian Hu, Xianshixuan Liu, Qianggen Zhu and Aiwu Jin
Forests 2026, 17(6), 659; https://doi.org/10.3390/f17060659 - 28 May 2026
Viewed by 539
Abstract
Fertilization is widely used in managed Moso bamboo (Phyllostachys edulis (Carrière) J.Houz.) forests in subtropical China, but its short-term effects on soil properties and microbiomes remain uncertain. In this study, we conducted a field experiment with four treatments: no fertilization (NF), compound [...] Read more.
Fertilization is widely used in managed Moso bamboo (Phyllostachys edulis (Carrière) J.Houz.) forests in subtropical China, but its short-term effects on soil properties and microbiomes remain uncertain. In this study, we conducted a field experiment with four treatments: no fertilization (NF), compound fertilizer (CF), sheep manure organic fertilizer plus compound fertilizer (SOCF), and a biochar-based sheep manure organic fertilizer combined with compound fertilizer (BSOCF). Surface soils samples were collected approximately one year after the initial application, and soil properties were measured together with bacterial and fungal communities using high-throughput sequencing. Results showed that fertilization mainly affected soil chemical properties rather than overall microbial community structure. Compared with CF, BSOCF significantly increased soil pH (4.56 ± 0.10 vs. 4.30 ± 0.05) and resulted in the highest available phosphorus (AP, 6.38 ± 1.10 mg kg−1) and available potassium (AK, 128.16 ± 17.56 mg kg−1) contents. Microbial responses were comparatively limited. Bacterial richness remained stable, fungal alpha diversity showed only a weak increasing trend, and both beta diversity and phylum-level composition changed little among treatments. Variation in treatment-enriched taxa was associated mainly with soil pH and nutrient availability. Overall, the results indicate that biochar-based sheep manure organic fertilizer can improv soil fertility and partially alleviated soil acidity, while causing only limited short-term shifts in the overall microbial community structure. These findings suggest that BSOCF may be a suitable fertilization strategy for enhancing nutrient availability in Moso bamboo forests with relatively low short-term disturbance to soil microbial assemblages. Full article
(This article belongs to the Special Issue Soil Nutrient Cycling and Microbial Dynamics in Forests: 2nd Edition)
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20 pages, 2223 KB  
Article
Integrated Organic–Inorganic Fertilization Enhances Microbial Stoichiometric Homeostasis but Triggers Seasonal Metabolic Trade-Offs in an Alpine Sandy Ecosystem
by Kai Yang, Fuchun Huang, Wensheng Yang, Xupeng Lu, Zhengtao Zhu, Jianqiang Zhu, Qixia Wu and Xiaohong Xu
Microorganisms 2026, 14(6), 1186; https://doi.org/10.3390/microorganisms14061186 - 25 May 2026
Viewed by 455
Abstract
The ecological restoration of degraded sandy land in the Yarlung Zangbo River Valley is constrained by the metabolic functions of soil microorganisms. This study investigates the dynamic mechanisms of microbial elemental use efficiency in walnut plantations, with a focus on seasonal variations in [...] Read more.
The ecological restoration of degraded sandy land in the Yarlung Zangbo River Valley is constrained by the metabolic functions of soil microorganisms. This study investigates the dynamic mechanisms of microbial elemental use efficiency in walnut plantations, with a focus on seasonal variations in soil chemical stoichiometry, extracellular enzyme activity, and microbial nutrient efficiency in rhizosphere and bulk soils. This paper explores the effects of conventional organic fertilizer (CF) and organic–inorganic compound fertilizer (OIF) on microbial nutrient use strategies and their seasonal dynamics. The results showed significant seasonal fluctuations in soil active nutrients and microbial biomass, while the total nutrient content remained stable. OIF enhanced microbial chemical stoichiometric homeostasis but simultaneously triggered a “carbon–phosphorus metabolic trade-off”, leading to a restraint of microbial carbon use efficiency (CUE) during the growing season. Microbial elemental use efficiency (EUE) exhibited clear seasonal differentiation: CUE was higher in summer, promoting biomass accumulation, whereas NUE and PUE increased in winter and spring, reflecting a nutrient conservation strategy. The EUE pathways were decoupled between rhizosphere and non-rhizosphere microenvironments. The rhizosphere was more directly driven by soil chemical stoichiometry and microbial biomass, while the non-rhizosphere was influenced by nutrient limitation states, represented by vector characteristics. This study provides insights into the seasonal adaptability and microenvironmental heterogeneity of microbial metabolism during the restoration of cold sandy land. It is suggested that future ecological management should focus on N-P balanced fertilization and consider the differential responses between rhizosphere and non-rhizosphere zones to enhance ecosystem productivity and soil carbon, nitrogen, and phosphorus sequestration potential. Full article
(This article belongs to the Section Environmental Microbiology)
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18 pages, 1108 KB  
Article
Silicon Sources Differentially Affect Physiological Responses, Nutrient Uptake, and Phenolic Compounds in Sour Passion Fruit
by Rozane Franci de Moraes Tavares, Almy Junior Cordeiro de Carvalho, Simone de Paiva Caetano Bucker Moraes, Henrique Martins de Oliveira, Álan Chrisleyr Maracahipes, Paulo Cesar dos Santos, Moises Zucoloto, Alessandro Coutinho Ramos, Weverton Pereira Rodrigues, Tâmara Moreira Silva, Marta Simone Mendonça Freitas, Gabriel Ramatis Pugliese Andrade, Vinicius de Freitas Manhães, Marlene Evangelista Vieira and José Luiz Leonardo de Araújo Pimenta
Horticulturae 2026, 12(5), 605; https://doi.org/10.3390/horticulturae12050605 - 14 May 2026
Viewed by 1162
Abstract
This study evaluated the effects of two silicon sources (silicic acid and Agrisil) and increasing Si concentrations on physiological responses, total polyphenol content, photochemical performance, nutrient uptake, and phenolic metabolism in sour passion fruit (Passiflora edulis Sims) grown under soilless culture conditions. [...] Read more.
This study evaluated the effects of two silicon sources (silicic acid and Agrisil) and increasing Si concentrations on physiological responses, total polyphenol content, photochemical performance, nutrient uptake, and phenolic metabolism in sour passion fruit (Passiflora edulis Sims) grown under soilless culture conditions. The experiment was conducted in a greenhouse using increasing concentrations of Si applied through the nutrient solution. Gas exchange parameters, chlorophyll index (SPAD), chlorophyll fluorescence variables, leaf temperature, and the contents of Si, nitrogen, and total polyphenols in leaves and roots were evaluated. Moderate Si concentrations enhanced stomatal conductance and transpiration, improving intrinsic water use efficiency, and maintaining higher chlorophyll levels and photochemical performance. In contrast, higher Si concentrations increased Si deposition in leaf tissues, reduced stomatal regulation and transpiration, and increased leaf temperature. These changes were associated with reductions in chlorophyll index and photochemical performance index (PI), as well as increased F0/Fm. Net CO2 assimilation remained relatively stable. Silicon uptake differed between sources, with silicic acid showing faster absorption and Agrisil a more gradual release. Silicon fertilization also increased nitrogen uptake and stimulated the accumulation of phenolic compounds in roots. Overall, moderate silicon supplies enhanced physiological stability, whereas excessive accumulation imposed photochemical constraints. Full article
(This article belongs to the Section Plant Nutrition)
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16 pages, 615 KB  
Review
Nitrogen Immobilization in Organic Media: A Double-Edged Sword Affecting the Utilization of Green Waste as Growing Media
by Ruohan Li, Wenzhong Cui, Min Zhang, Zhiyong Qi and Wanlai Zhou
Plants 2026, 15(9), 1298; https://doi.org/10.3390/plants15091298 - 23 Apr 2026
Cited by 2 | Viewed by 1034
Abstract
This review proposes a “phenomenon–mechanism–regulation” framework for understanding nitrogen immobilization during the conversion of green waste into growing media. Nitrogen immobilization acts as a double-edged sword: intense short-term immobilization, typically occurring within the first 1–2 weeks after substrate establishment, can rapidly deplete mineral [...] Read more.
This review proposes a “phenomenon–mechanism–regulation” framework for understanding nitrogen immobilization during the conversion of green waste into growing media. Nitrogen immobilization acts as a double-edged sword: intense short-term immobilization, typically occurring within the first 1–2 weeks after substrate establishment, can rapidly deplete mineral nitrogen and induce plant nitrogen deficiency, whereas the immobilized nitrogen is subsequently incorporated into microbial biomass and lignin-associated organic pools, forming a slow-release reservoir that enhances nitrogen retention and reduces leaching losses. Owing to its extremely high C/N ratio (often >100) and the coexistence of labile carbon fractions and recalcitrant compounds (e.g., lignin and phenolics), green waste exhibits substantially stronger immobilization potential than conventional media. Empirical evidence indicates that nitrogen immobilization can reach 10–115 mg N·L−1 within a few days in wood-derived substrates, and additional fertilization of up to 100 mg N·L−1 may be required to maintain crop growth. Mechanistically, nitrogen immobilization is governed by the coupling of microbial assimilation—driven by stoichiometric C/N imbalance (typically triggered when C/N > 20–25)—and abiotic chemical fixation, including reactions between NH4+/NO2 and lignin-derived phenolics forming stable organic nitrogen compounds. The relative dominance of these pathways is jointly regulated by carbon quality, nitrogen form, and pH. Based on these mechanisms, regulatory strategies are summarized at multiple scales, including feedstock pretreatment to reduce labile carbon availability, substrate formulation to optimize C/N balance, and model-assisted intelligent fertigation to synchronize nitrogen supply with crop demand. Overall, this study provides a theoretical basis for improving green waste valorization and promoting sustainable horticultural production. Full article
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21 pages, 1572 KB  
Article
Exploitation of Different Frass from the Hermetia illucens (L.) (Diptera, Stratiomyidae, Hermetiinae) Rearing Chain
by Enrico Santangelo, Alberto de Iudicibus, Silvia Arnone, Ferdinando Baldacchino, Eleonora De Santis, Monica Carnevale, Paolo Mattei, Francesco Gallucci, Angelo Del Giudice, Alberto Assirelli and Claudio Beni
Agriculture 2026, 16(7), 725; https://doi.org/10.3390/agriculture16070725 - 25 Mar 2026
Viewed by 742
Abstract
Black Soldier Fly larvae (BSFL) bioconvert a wide variety of organic waste into value compounds including the residual frass, a by-product exploitable as compost for plant growth. The use of a non-standardized waste diet that varies in terms of properties does not ensure [...] Read more.
Black Soldier Fly larvae (BSFL) bioconvert a wide variety of organic waste into value compounds including the residual frass, a by-product exploitable as compost for plant growth. The use of a non-standardized waste diet that varies in terms of properties does not ensure the maintenance of a highly fertile and healthy BSF colony able to produce viable inoculum (5–7-day-old larvae) for waste bioconversion. The Gainesville diet (GD) is a balanced formulation to ensure full larval development in fertile adults, resulting in a stable rearing colony. On a large scale, the bioconversion supply chain can produce different types of frass. Frass derived from the Gainesville diet (GDf), from fruit and vegetable waste (FVWf), and from milled fruit and vegetable waste (MWf) was composted and then compared to evaluate its fertilizing effect on lettuce growth in two pot-growing experiments. Each compost was added at concentrations of 2.5, 5, and 10%. The growth of lettuce improved significantly with the addition of composted frass in a dose-dependent manner when compared to unfertilized soil. GDf 10% gave the significantly best performance in terms of plant height (20.8 cm versus 17.9 cm) and fresh weight (113.5 g versus 87.7 g) compared to FVWf. In the experiment, the combined use of composted frass at 10% of both GDf and FVWf with a double mineral fertilizer application showed no significant differences compared to triple application. However, GDf provided significantly greater chlorophyll content than FVWf. These results highlight how, under the conditions tested in the present work, the frass of the entire productive chain of BSF is a high value by-product. Full article
(This article belongs to the Special Issue Application of Biomass in Agricultural Circular Economy)
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17 pages, 6540 KB  
Article
Effects of Inorganic Fluoride and the Fluoroquinolone Antibiotic Pefloxacin on the Growth and Microbiome Structure of Eruca sativa L.
by Jan Kamiński and Agnieszka I. Piotrowicz-Cieślak
Int. J. Mol. Sci. 2026, 27(7), 2931; https://doi.org/10.3390/ijms27072931 - 24 Mar 2026
Viewed by 564
Abstract
Environmental contamination with fluorinated compounds has increased markedly due to their widespread use in industry, medicine, and agriculture. Fluoride ions and fluoroquinolone antibiotics may enter soils through fertilizers, wastewater, and manure application, where they can interact with plant-associated microbial communities. In the present [...] Read more.
Environmental contamination with fluorinated compounds has increased markedly due to their widespread use in industry, medicine, and agriculture. Fluoride ions and fluoroquinolone antibiotics may enter soils through fertilizers, wastewater, and manure application, where they can interact with plant-associated microbial communities. In the present study, we investigated the effects of inorganic fluoride (applied as sodium fluoride, NaF) and the fluoroquinolone antibiotic pefloxacin on the growth and microbiome composition of Eruca sativa L. Plants were cultivated under controlled conditions and exposed for four weeks to NaF or pefloxacin at equimolar concentrations of 10 and 20 µM/kg soil. Morphological parameters, including biomass accumulation, root length, leaf dimensions, and leaf area, were not significantly affected by either treatment. Nevertheless, increased variability of growth traits was observed, particularly in plants exposed to NaF. High-throughput sequencing of the 16S rRNA gene revealed pronounced, treatment-specific alterations in both rhizosphere and phyllosphere bacterial communities. The rhizosphere microbiome was relatively stable at higher taxonomic levels but exhibited selective enrichment of Actinomycetota, including the class Thermoleophilia, under NaF exposure. In contrast, the phyllosphere microbiome showed strong sensitivity to fluoride, with a marked increase in Betaproteobacteria, dominated by Burkholderiales. Changes induced by pefloxacin were weaker and more diffuse. Our results demonstrate that plant-associated microbiomes respond to fluorinated compounds at concentrations that do not induce visible plant stress. The phyllosphere microbiome, in particular, represents a sensitive indicator of fluoride exposure and may serve as an early-warning system for environmental contamination. Full article
(This article belongs to the Section Molecular Microbiology)
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16 pages, 1437 KB  
Review
Environmental Regulation of 2-Acetyl-1-pyrroline Biosynthesis in Fragrant Rice: From Metabolic Pathways to Sustainable Quality Management
by Junjun Guo, Junyi Miao, Jin Chen, Deqian Huang, Chuyi Wang and Jiancheng Wen
Genes 2026, 17(3), 349; https://doi.org/10.3390/genes17030349 - 22 Mar 2026
Viewed by 1683
Abstract
The market value of fragrant rice is largely defined by the presence and intensity of its aroma, which is primarily attributed to volatile compound 2-acetyl-1-pyrroline (2-AP). The biosynthesis of 2-AP is chiefly governed by recessive alleles of the badh2 gene. Nevertheless, 2-AP accumulation [...] Read more.
The market value of fragrant rice is largely defined by the presence and intensity of its aroma, which is primarily attributed to volatile compound 2-acetyl-1-pyrroline (2-AP). The biosynthesis of 2-AP is chiefly governed by recessive alleles of the badh2 gene. Nevertheless, 2-AP accumulation is also profoundly shaped by environmental factors and agronomic management. Field practices—such as balanced nitrogen and potassium fertilization, supplementation with trace elements, and application of plant growth regulators like methyl jasmonate—promote 2-AP synthesis by increasing precursor availability and enhancing the activity of key enzymes. Additionally, tillage systems, alternate wetting and drying irrigation, optimal planting density, and harvest timing significantly affect aroma quality. Abiotic stresses, including moderate drought, salinity, optimal temperatures around 25 °C, and low light during grain filling, can also stimulate 2-AP accumulation, often through shifts in proline metabolism and activation of stress-responsive pathways involving GABA and methylglyoxal. Despite the promise of these strategies, several challenges persist, such as the common trade-off between yield and aroma intensity, complex genotype-by-environment interactions, and incomplete elucidation of the molecular mechanisms involved. Moving forward, integrating multi-omics analyses with smart agriculture technologies will be essential to unravel the regulatory networks underlying aroma formation and to advance the breeding of high-yielding fragrant rice varieties with stable aroma traits under changing climate scenarios. Full article
(This article belongs to the Section Genes & Environments)
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16 pages, 1841 KB  
Article
Enhancing Soil Functionality Through Circular Fertilizers Derived from Agro-Industrial Wastes: Insights into Microbiological and Biochemical Dynamics
by Angela Maffia, Federica Alessia Marra, Santo Battaglia, Carmelo Mallamaci and Adele Muscolo
Environments 2026, 13(2), 93; https://doi.org/10.3390/environments13020093 - 9 Feb 2026
Cited by 1 | Viewed by 1127
Abstract
The growing demand for sustainable fertilization practices has stimulated interest in circular fertilizers derived from agro-industrial and agricultural wastes. This study assessed the agronomic and biological performance of several waste-based fertilizers—produced through composting, vermicomposting, and sulfur–bentonite enrichment—on chemical and microbiological soil properties. Composts [...] Read more.
The growing demand for sustainable fertilization practices has stimulated interest in circular fertilizers derived from agro-industrial and agricultural wastes. This study assessed the agronomic and biological performance of several waste-based fertilizers—produced through composting, vermicomposting, and sulfur–bentonite enrichment—on chemical and microbiological soil properties. Composts and vermicomposts were prepared from olive pomace, citrus residues, wood sawdust, and straw, with or without elemental sulfur obtained from petroleum gas desulfurization. Field trials were conducted on a sandy loam soil (Motta San Giovanni, Italy) to compare the different formulations. After six months, soils amended with waste-based fertilizers exhibited significant improvements in key parameters relative to both the control and mineral fertilizer treatment. Vermicompost applications (SV1, SV2) increased total organic carbon by 20–30% (up to 2.1%), total nitrogen by 35–45% (0.22–0.23%), microbial biomass carbon by ~25% (≈1090 µg C g−1), and dehydrogenase and fluorescein diacetate activities by 10–20% compared with compost or sulfur–bentonite treatments. Compost amendments (SC1, SC2) raised soil pH (8.2–8.3) and organic matter content (≈3.3–3.6%), while sulfur–bentonite formulations lowered pH to 7.1–7.3 and increased water-soluble phenols (up to 40 µg TAE g−1 d.s). The highest cation exchange capacity (22–23 cmol (+) kg−1) was observed in vermicompost-amended soils. Microbial community analysis revealed greater fungal abundance under sulfur–bentonite treatments, whereas bacteria and actinomycetes predominated in compost-amended soils. Principal Component Analysis (explaining 76% of variance) identified two main functional pathways: vermicompost treatments clustered with indicators of high biological activity (TOC, TN, MBC, and enzyme activities), while compost and sulfur–bentonite treatments were associated with pH, phenolic compounds, and fungal biomass, reflecting slower but more stable organic matter turnover. Overall, vermicompost-based fertilizers proved most effective in enhancing short-term nutrient availability and microbial activation, whereas composts favored long-term soil carbon accumulation and stability. These results highlight the potential of circular fertilizers derived from agro-industrial wastes to restore soil health, close nutrient cycles, and reduce dependence on synthetic fertilizers—thereby advancing sustainable and circular agriculture. Full article
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12 pages, 3011 KB  
Article
Changes in Growth and Polyphenol Content of the Rare Plant Persicaria chinensis Cultivated in a Greenhouse During the Growth Period
by Daeho Choi, Yong-Woo Park, Jungmok Kang and Hwayong Lee
Plants 2026, 15(3), 498; https://doi.org/10.3390/plants15030498 - 5 Feb 2026
Viewed by 817
Abstract
The growth characteristics and changes in major polyphenol content of the rare plant Persicaria chinensis cultivated under greenhouse conditions were investigated to evaluate its potential for large-scale cultivation and industrial use. The fresh and dry weights of the leaves and stems were measured [...] Read more.
The growth characteristics and changes in major polyphenol content of the rare plant Persicaria chinensis cultivated under greenhouse conditions were investigated to evaluate its potential for large-scale cultivation and industrial use. The fresh and dry weights of the leaves and stems were measured monthly from May to October, and the corilagin, ellagic acid, geraniin, and neochlorogenic acid contents were analyzed. Leaf fresh and dry weights peaked in June (11.73 ± 4.74 g and 3.02 ± 1.22 g, respectively) and increased again in August thereafter, and subsequently decreased, whereas stem fresh and dry weights continuously increased throughout the cultivation period, reaching 20.06 ± 3.88 g and 7.68 ± 1.55 g, respectively, in October. The polyphenol content in leaves was generally highest in June and then declined. In September, the contents of corilagin and ellagic acid showed marked increases, reaching 10.34 ± 4.13 mg/g and 7.26 ± 3.78 mg/g, respectively. In the stems, the polyphenol content was lower than that in the leaves and showed a decreasing trend after the early cultivation stage. Correlation analysis revealed weak relationships between biomass and polyphenol content in the leaves, whereas strong positive correlations among polyphenols and negative correlations between stem growth and polyphenol content were observed in the stems. These results demonstrate that stable greenhouse cultivation of P. chinensis and the accumulation of functional compounds are feasible and provide fundamental information for the development of cultivation strategies, including appropriate fertilization and environmental management, aimed at functional raw material production. Full article
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21 pages, 5177 KB  
Article
Identification of FDA-Approved Drugs as Potential Inhibitors of WEE2: Structure-Based Virtual Screening and Molecular Dynamics with Perspectives for Machine Learning-Assisted Prioritization
by Shahid Ali, Abdelbaset Mohamed Elasbali, Wael Alzahrani, Taj Mohammad, Md. Imtaiyaz Hassan and Teng Zhou
Life 2026, 16(2), 185; https://doi.org/10.3390/life16020185 - 23 Jan 2026
Cited by 5 | Viewed by 1481
Abstract
Wee1-like protein kinase 2 (WEE2) is an oocyte-specific kinase that regulates meiotic arrest and fertilization. Its largely restricted expression in female germ cells and absence in somatic tissues make it a highly selective target for reproductive health interventions. Despite its central role in [...] Read more.
Wee1-like protein kinase 2 (WEE2) is an oocyte-specific kinase that regulates meiotic arrest and fertilization. Its largely restricted expression in female germ cells and absence in somatic tissues make it a highly selective target for reproductive health interventions. Despite its central role in human fertility, no clinically approved WEE2 modulator is available. In this study, we employed an integrated in silico approach that combines structure-based virtual screening, molecular dynamics (MD) simulations, and MM-PBSA free-energy calculations to identify repurposed drug candidates with potential WEE2 inhibitory activity. Screening of ~3800 DrugBank compounds against the WEE2 catalytic domain yielded ten high-affinity hits, from which Midostaurin and Nilotinib emerged as the most mechanistically relevant based on kinase-targeting properties and pharmacological profiles. Docking analyses revealed strong binding affinities (−11.5 and −11.3 kcal/mol) and interaction fingerprints highly similar to the reference inhibitor MK1775, including key contacts with hinge-region residues Val220, Tyr291, and Cys292. All-atom MD simulations for 300 ns demonstrated that both compounds induce stable protein–ligand complexes with minimal conformational drift, decreased residual flexibility, preserved compactness, and stable intramolecular hydrogen-bond networks. Principal component and free-energy landscape analyses further indicate restricted conformational sampling of WEE2 upon ligand binding, supporting ligand-induced stabilization of the catalytic domain. MM-PBSA calculations confirmed favorable binding free energies for Midostaurin (−18.78 ± 2.23 kJ/mol) and Nilotinib (−17.47 ± 2.95 kJ/mol), exceeding that of MK1775. To increase the translational prioritization of candidate hits, we place our structure-based pipeline in the context of modern machine learning (ML) and deep learning (DL)-enabled virtual screening workflows. ML/DL rescoring and graph-based molecular property predictors can rapidly re-rank docking hits and estimate absorption, distribution, metabolism, excretion, and toxicity (ADMET) liabilities before in vitro evaluation. Full article
(This article belongs to the Special Issue Role of Machine and Deep Learning in Drug Screening)
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19 pages, 4197 KB  
Article
Ecological Modulation of Soil Microbial Communities by Fertilization Regimes: Insights from Castor Bean Cake, Chemical Fertilizers, and Organic Fertilizer
by Chongyang Hu, Yalijuan Wu, Zecheng Li, Zhiyong Wang, Fenglan Huang, Zhiquan Fan and Mu Peng
Microorganisms 2025, 13(12), 2841; https://doi.org/10.3390/microorganisms13122841 - 14 Dec 2025
Viewed by 987
Abstract
Fertilization plays a vital role in replenishing soil nutrients, shaping microbial community composition, and enhancing agricultural productivity. Castor bean cake (CBC) is a nitrogen- and carbon-rich by-product increasingly used as an organic amendment, yet its effects on soil microbiomes remain unclear. Here, we [...] Read more.
Fertilization plays a vital role in replenishing soil nutrients, shaping microbial community composition, and enhancing agricultural productivity. Castor bean cake (CBC) is a nitrogen- and carbon-rich by-product increasingly used as an organic amendment, yet its effects on soil microbiomes remain unclear. Here, we compared CBC with a compound chemical fertilizer (CF) and a manure-based organic fertilizer (OF) across dose gradients using 16S rRNA sequencing and multi-level ecology analyses (α/β diversity, co-occurrence networks, and community assembly models). The results revealed that CBC increased bacterial richness and phylogenetic breadth relative to the unfertilized cultivated control, whereas OF showed dose-dependent declines in richness and CF maintained relatively stable richness with slight reductions in evenness at higher doses. Phylum-level composition shifted strongly with fertilizer identity: Bacillota decreased, whereas Pseudomonadota and Acidobacteriota increased under fertilization, with the largest compositional changes under CBC. CBC strengthened nutrient–enzyme–microbe coupling and generated increasingly complex, highly connected, and robust co-occurrence networks along the dose gradient, outperforming high-dose OF in network complexity and robustness, while OF maintained higher modularity. Null-model partitions (βNTI/RC_bray, NST, NCM, iCAMP) indicated that stochastic processes dominated community assembly across treatments; along the CBC gradient, dispersal limitation decreased from CBC1 to CBC2 and drift remained dominant, indicating increasing stochastic stabilization at moderate–high doses. Together, CBC promoted microbiome recovery and ecological resilience and represents a promising amendment for soil health. Full article
(This article belongs to the Special Issue Microorganisms in Agriculture, 2nd Edition)
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16 pages, 2963 KB  
Article
Preparation and Evaluation of an Organic Value-Added Suspension Fertilizer Using Liquid Waste
by Yaoli Su, Yang Luo, Lu Xu, Dehua Xu, Zhengjuan Yan and Xinlong Wang
Agriculture 2025, 15(24), 2568; https://doi.org/10.3390/agriculture15242568 - 11 Dec 2025
Viewed by 994
Abstract
Suspension fertilizers offer high concentration, excellent fluidity, an eco-friendly production process, and ease of precise and even application, making them ideal for modern fertigation systems. However, stability remains a significant challenge. This study aims to develop an organic value-added suspension fertilizer (VSuF) based [...] Read more.
Suspension fertilizers offer high concentration, excellent fluidity, an eco-friendly production process, and ease of precise and even application, making them ideal for modern fertigation systems. However, stability remains a significant challenge. This study aims to develop an organic value-added suspension fertilizer (VSuF) based on the filtrate of acid–base-treated soybean residue, which can ensure stability during transportation and storage while promoting efficient nutrient utilization in agriculture. The stabilizers were optimized by comparing the effects of various types and dosages on particle size, zeta potential, viscosity, and thixotropy of the suspension fertilizer. Meanwhile, the stability and agricultural effects of the fertilizer were evaluated. Results showed that with 0.40% sodium lignosulfonate, 0.40% xanthan gum, and 0.20% organic silicon defoamer, VSuF remained stable during centrifugation (2000 r·min−1, 30 min) and storage at 0 °C and 50 °C for 14 days. Additionally, agricultural evaluation indicated that VSuF significantly increased the dry weight and phosphorus uptake of crop shoots by 17.40% and 21.00%, respectively, relative to the solid fertilizer without the value-added compound. Meanwhile, VSuF enhanced the fresh weight, length, and surface area of crop roots by 83.10%, 74.47%, and 69.34%, respectively, along with shoots’ phosphorus uptake by 19.80%, compared to the glucose value-added solid fertilizers. Full article
(This article belongs to the Section Agricultural Technology)
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26 pages, 4036 KB  
Article
Integrated Moldboard Ploughing and Organic–Inorganic Fertilization Enhances Maize Yield and Soil Fertility in a Semi-Arid Region of North China
by Min Gao, Qingmiao Zhen, Yafeng Duan, Chao Liu, Jing Zhou, Yongping Li, Xiaochen Zhang, Xiuhong Wang and Xiangyuan Shi
Plants 2025, 14(23), 3594; https://doi.org/10.3390/plants14233594 - 25 Nov 2025
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Abstract
To address soil degradation from long-term monoculture, rotary tillage, and excessive chemical fertilization in semi-arid regions of China, we conducted a three-year field experiment. We assessed the synergy of integrated management practices combined with both continuous and rotational tillage methods (including ploughing, rotary, [...] Read more.
To address soil degradation from long-term monoculture, rotary tillage, and excessive chemical fertilization in semi-arid regions of China, we conducted a three-year field experiment. We assessed the synergy of integrated management practices combined with both continuous and rotational tillage methods (including ploughing, rotary, moldboard ploughing) at varying tillage depths (10–15, 15–25, 25–35 cm) with different fertilization regimes (chemical vs. organic–inorganic). Among all treatments, the rotational tillage practice that integrates moldboard ploughing at 25–35 cm depth with organic–inorganic fertilization [1200 kg ha−1 mature compost + 375 kg ha−1 compound fertilizer (N:P2O5:K2O = 15:15:15)] significantly reduces bulk density by 11.8% and increases total porosity by 17.9% in the 15–25 cm soil layer. This practice optimizes nutrient stratification, elevating available nitrogen and potassium in the shallow layer (10–15 cm) to 126.13 and 372.45 mg kg−1, respectively, while boosting available phosphorus in the subsoil (25–35 cm) by 247.8%. Furthermore, it significantly enhances soil microbial activity, increasing populations of bacteria, actinomycetes, and fungi by 3.42 × 105, 0.65 × 105, and 2.40 × 103 CFU g−1, respectively, alongside a 49.4% rise in soil respiration. These synergistic improvements collectively promote stable maize yields (increasing by 1731.4 kg ha−1) and high economic returns (net income increasing by 3301.6 CNY ha−1). These findings support the promotion of integrated tillage–fertilization strategies to enhance maize productivity and soil ecological function in semi-arid regions. Full article
(This article belongs to the Special Issue Agricultural Soil Management for Crop Cultivation and Productivity)
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