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Search Results (2,385)

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22 pages, 2187 KiB  
Article
Long-Term Rotary Tillage and Straw Mulching Enhance Dry Matter Production, Yield, and Water Use Efficiency of Wheat in a Rain-Fed Wheat-Soybean Double Cropping System
by Shiyan Dong, Ming Huang, Junhao Zhang, Qihui Zhou, Chuan Hu, Aohan Liu, Hezheng Wang, Guozhan Fu, Jinzhi Wu and Youjun Li
Plants 2025, 14(15), 2438; https://doi.org/10.3390/plants14152438 - 6 Aug 2025
Abstract
Water deficiency and low water use efficiency severely constrain wheat yield in dryland regions. This study aimed to identify suitable tillage methods and straw management to improve dry matter production, grain yield, and water use efficiency of wheat in the dryland winter wheat–summer [...] Read more.
Water deficiency and low water use efficiency severely constrain wheat yield in dryland regions. This study aimed to identify suitable tillage methods and straw management to improve dry matter production, grain yield, and water use efficiency of wheat in the dryland winter wheat–summer bean (hereafter referred to as wheat-soybean) double-cropping system. A long-term located field experiment (onset in October 2009) with two tillage methods—plowing (PT) and rotary tillage (RT)—and two straw management—no straw mulching (NS) and straw mulching (SM)—was conducted at a typical dryland in China. The wheat yield and yield component, dry matter accumulation and translocation characteristics, and water use efficiency were investigated from 2014 to 2018. Straw management significantly affected wheat yield and yield components, while tillage methods had no significant effect. Furthermore, the interaction of tillage methods and straw management significantly affected yield and yield components except for the spike number. RTSM significantly increased the spike number, grains per spike, 1000-grain weight, harvest index, and grain yield by 12.5%, 8.4%, 6.0%, 3.4%, and 13.4%, respectively, compared to PTNS. Likewise, RTSM significantly increased the aforementioned indicators by 14.8%, 10.1%, 7.5%, 3.6%, and 20.5%, compared to RTNS. Mechanistic analysis revealed that, compared to NS, SM not only significantly enhanced pre-anthesis and post-anthesis dry matter accumulation, and pre-anthesis dry matter tanslocation to grain, but also significantly improved pre-sowing water storage, water consumption during wheat growth, water use efficiency, and water-saving for produced per kg grain yield, with the greatest improvements obtained under RT than PT. Technique for Order Preference by Similarity to Ideal Solution (TOPSIS) analysis confirmed RTSM’s yield superiority was mainly ascribed to straw-induced improvements in dry matter and water productivity. In a word, rotary tillage with straw mulching could be recommended as a suitable practice for high-yield wheat production in a dryland wheat-soybean double-cropping system. Full article
(This article belongs to the Special Issue Emerging Trends in Alternative and Sustainable Crop Production)
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12 pages, 2135 KiB  
Article
Development of Yellow Rust-Resistant and High-Yielding Bread Wheat (Triticum aestivum L.) Lines Using Marker-Assisted Backcrossing Strategies
by Bekhruz O. Ochilov, Khurshid S. Turakulov, Sodir K. Meliev, Fazliddin A. Melikuziev, Ilkham S. Aytenov, Sojida M. Murodova, Gavkhar O. Khalillaeva, Bakhodir Kh. Chinikulov, Laylo A. Azimova, Alisher M. Urinov, Ozod S. Turaev, Fakhriddin N. Kushanov, Ilkhom B. Salakhutdinov, Jinbiao Ma, Muhammad Awais and Tohir A. Bozorov
Int. J. Mol. Sci. 2025, 26(15), 7603; https://doi.org/10.3390/ijms26157603 - 6 Aug 2025
Abstract
The fungal pathogen Puccinia striiformis f. sp. tritici, which causes yellow rust disease, poses a significant economic threat to wheat production not only in Uzbekistan but also globally, leading to substantial reductions in grain yield. This study aimed to develop yellow rust-resistance [...] Read more.
The fungal pathogen Puccinia striiformis f. sp. tritici, which causes yellow rust disease, poses a significant economic threat to wheat production not only in Uzbekistan but also globally, leading to substantial reductions in grain yield. This study aimed to develop yellow rust-resistance wheat lines by introgressing Yr10 and Yr15 genes into high-yielding cultivar Grom using the marker-assisted backcrossing (MABC) method. Grom was crossed with donor genotypes Yr10/6*Avocet S and Yr15/6*Avocet S, resulting in the development of F1 generations. In the following years, the F1 hybrids were advanced to the BC2F1 and BC2F2 generations using the MABC approach. Foreground and background selection using microsatellite markers (Xpsp3000 and Barc008) were employed to identify homozygous Yr10- and Yr15-containing genotypes. The resulting BC2F2 lines, designated as Grom-Yr10 and Grom-Yr15, retained key agronomic traits of the recurrent parent cv. Grom, such as spike length (13.0–11.9 cm) and spike weight (3.23–2.92 g). Under artificial infection conditions, the selected lines showed complete resistance to yellow rust (infection type 0). The most promising BC2F2 plants were subsequently advanced to homozygous BC2F3 lines harboring the introgressed resistance genes through marker-assisted selection. This study demonstrates the effectiveness of integrating molecular marker-assisted selection with conventional breeding methods to enhance disease resistance while preserving high-yielding traits. The newly developed lines offer valuable material for future wheat improvement and contribute to sustainable agriculture and food security. Full article
(This article belongs to the Special Issue Molecular Advances in Understanding Plant-Microbe Interactions)
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19 pages, 2415 KiB  
Article
Auto Deep Spiking Neural Network Design Based on an Evolutionary Membrane Algorithm
by Chuang Liu and Haojie Wang
Biomimetics 2025, 10(8), 514; https://doi.org/10.3390/biomimetics10080514 - 6 Aug 2025
Abstract
In scientific research and engineering practice, the design of deep spiking neural network (DSNN) architectures remains a complex task that heavily relies on the expertise and experience of professionals. These architectures often require repeated adjustments and modifications based on factors such as the [...] Read more.
In scientific research and engineering practice, the design of deep spiking neural network (DSNN) architectures remains a complex task that heavily relies on the expertise and experience of professionals. These architectures often require repeated adjustments and modifications based on factors such as the DSNN’s performance, resulting in significant consumption of human and hardware resources. To address these challenges, this paper proposes an innovative evolutionary membrane algorithm for optimizing DSNN architectures. This algorithm automates the construction and design of promising network models, thereby reducing reliance on manual tuning. More specifically, the architecture of DSNN is transformed into the search space of the proposed evolutionary membrane algorithm. The proposed algorithm thoroughly explores the impact of hyperparameters, such as the candidate operation blocks of DSNN, to identify optimal configurations. Additionally, an early stopping strategy is adopted in the performance evaluation phase to mitigate the time loss caused by objective evaluations, further enhancing efficiency. The optimal models identified by the proposed algorithm were evaluated on the CIFAR-10 and CIFAR-100 datasets. The experimental results demonstrate the effectiveness of the proposed algorithm, showing significant improvements in accuracy compared to the existing state-of-the-art methods. This work highlights the potential of evolutionary membrane algorithms to streamline the design and optimization of DSNN architectures, offering a novel and efficient approach to address the challenges in the applications of automated parameter optimization for DSNN. Full article
(This article belongs to the Special Issue Exploration of Bio-Inspired Computing: 2nd Edition)
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21 pages, 3832 KiB  
Article
Effects of Water Use Efficiency Combined with Advancements in Nitrogen and Soil Water Management for Sustainable Agriculture in the Loess Plateau, China
by Hafeez Noor, Fida Noor, Zhiqiang Gao, Majed Alotaibi and Mahmoud F. Seleiman
Water 2025, 17(15), 2329; https://doi.org/10.3390/w17152329 - 5 Aug 2025
Abstract
In China’s Loess Plateau, sustainable agricultural end products are affected by an insufficiency of water resources. Rising crop water use efficiency (WUE) through field management pattern improvement is a crucial plan of action to address this issue. However, there is no agreement among [...] Read more.
In China’s Loess Plateau, sustainable agricultural end products are affected by an insufficiency of water resources. Rising crop water use efficiency (WUE) through field management pattern improvement is a crucial plan of action to address this issue. However, there is no agreement among researchers on the most appropriate field management practices regarding WUE, which requires further integrated quantitative analysis. We conducted a meta-analysis by quantifying the effect of agricultural practices surrounding nitrogen (N) fertilizer management. The two experimental cultivars were Yunhan–20410 and Yunhan–618. The subplots included nitrogen 0 kg·ha−1 (N0), 90 kg·ha−1 (N90), 180 kg·ha−1 (N180), 210 kg·ha−1 (N210), and 240 kg·ha−1 (N240). Our results show that higher N rates (up to N210) enhanced water consumption during the node-flowering and flowering-maturity time periods. YH–618 showed higher water use during the sowing–greening and node-flowering periods but decreased use during the greening-node and flowering-maturity periods compared to YH–20410. The N210 treatment under YH–618 maximized water use efficiency (WUE). Increased N rates (N180–N210) decreased covering temperatures (Tmax, Tmin, Taver) during flowering, increasing the level of grain filling. Spike numbers rose with N application, with an off-peak at N210 for strong-gluten wheat. The 1000-grain weight was at first enhanced but decreased at the far end of N180–N210. YH–618 with N210 achieved a harvest index (HI) similar to that of YH–20410 with N180, while excessive N (N240) or water reduced the HI. Dry matter accumulation increased up to N210, resulting in earlier stabilization. Soil water consumption from wintering to jointing was strongly correlated with pre-flowering dry matter biological process and yield, while jointing–flowering water use was linked to post-flowering dry matter and spike numbers. Post-flowering dry matter accumulation was critical for yield, whereas spike numbers positively impacted yield but negatively affected 1000-grain weight. In conclusion, our results provide evidence for determining suitable integrated agricultural establishment strategies to ensure efficient water use and sustainable production in the Loess Plateau region. Full article
(This article belongs to the Special Issue Soil–Water Interaction and Management)
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14 pages, 2310 KiB  
Article
A High-Fidelity Model of the Peach Bottom 2 Turbine-Trip Benchmark Using VERA
by Nicholas Herring, Robert Salko and Mehdi Asgari
J. Nucl. Eng. 2025, 6(3), 28; https://doi.org/10.3390/jne6030028 - 4 Aug 2025
Abstract
This work presents a high-fidelity simulation of the Peach Bottom turbine trip (PBTT) benchmark using the Virtual Environment for Reactor Applications (VERA), a multiphysics reactor modeling tool developed by the U.S. Department of Energy’s Consortium for Advanced Simulation of Light Water Reactors energy [...] Read more.
This work presents a high-fidelity simulation of the Peach Bottom turbine trip (PBTT) benchmark using the Virtual Environment for Reactor Applications (VERA), a multiphysics reactor modeling tool developed by the U.S. Department of Energy’s Consortium for Advanced Simulation of Light Water Reactors energy innovation hub. The PBTT benchmark, based on a 1977 transient event at the end of cycle 2 in a General Electric Type-4 boiling water reactor (BWR), is a critical test case for validating core physics models with thermal feedback during rapid reactivity events. VERA was employed to perform end-to-end, pin-resolved simulations from conditions at the beginning of cycle 1 through the turbine-trip transient, incorporating detailed neutron transport, fuel depletion, and subchannel thermal hydraulics. The simulation reproduced key benchmark observables with high accuracy: the peak power excursion occurred at 0.75 s, matching the scram time and closely aligning with the benchmark average of 0.742 s; the simulated maximum power spike was approximately 7600 MW, which is within 3% of the benchmark average of 7400 MW; and void-collapse dynamics were consistent with benchmark expectations. Reactivity predictions during cycles 1 and 2 remained within 1500 pcm and 400 pcm of criticality, respectively. These results confirm VERA’s ability to model complex coupled neutronic and thermal hydraulic behavior in a BWR turbine-trip transient, which will support its use in future studies of modeling dryout, fuel performance, and uncertainty quantification for transients of this type. Full article
(This article belongs to the Special Issue Validation of Code Packages for Light Water Reactor Physics Analysis)
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16 pages, 1134 KiB  
Article
Neural Correlates of Loudness Coding in Two Types of Cochlear Implants—A Model Study
by Ilja M. Venema, Savine S. M. Martens, Randy K. Kalkman, Jeroen J. Briaire and Johan H. M. Frijns
Technologies 2025, 13(8), 331; https://doi.org/10.3390/technologies13080331 - 1 Aug 2025
Viewed by 183
Abstract
Many speech coding strategies have been developed over the years, but comparing them has been convoluted due to the difficulty in disentangling brand-specific and patient-specific factors from strategy-specific factors that contribute to speech understanding. Here, we present a comparison with a ‘virtual’ patient, [...] Read more.
Many speech coding strategies have been developed over the years, but comparing them has been convoluted due to the difficulty in disentangling brand-specific and patient-specific factors from strategy-specific factors that contribute to speech understanding. Here, we present a comparison with a ‘virtual’ patient, by comparing two strategies from two different manufacturers, Advanced Combination Encoder (ACE) versus HiResolution Fidelity 120 (F120), running on two different implant systems in a computational model with the same anatomy and neural properties. We fitted both strategies to an expected T-level and C- or M-level based on the spike rate for each electrode contact’s allocated frequency (center electrode frequency) of the respective array. This paper highlights neural and electrical differences due to brand-specific characteristics such as pulse rate/channel, recruitment of adjacent electrodes, and presence of subthreshold pulses or interphase gaps. These differences lead to considerably different recruitment patterns of nerve fibers, while achieving the same total spike rates, i.e., loudness percepts. Also, loudness growth curves differ significantly between brands. The model is able to demonstrate considerable electrical and neural differences in the way loudness growth is achieved in CIs from different manufacturers. Full article
(This article belongs to the Special Issue The Challenges and Prospects in Cochlear Implantation)
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26 pages, 62045 KiB  
Article
CML-RTDETR: A Lightweight Wheat Head Detection and Counting Algorithm Based on the Improved RT-DETR
by Yue Fang, Chenbo Yang, Chengyong Zhu, Hao Jiang, Jingmin Tu and Jie Li
Electronics 2025, 14(15), 3051; https://doi.org/10.3390/electronics14153051 - 30 Jul 2025
Viewed by 171
Abstract
Wheat is one of the important grain crops, and spike counting is crucial for predicting spike yield. However, in complex farmland environments, the wheat body scale has huge differences, its color is highly similar to the background, and wheat ears often overlap with [...] Read more.
Wheat is one of the important grain crops, and spike counting is crucial for predicting spike yield. However, in complex farmland environments, the wheat body scale has huge differences, its color is highly similar to the background, and wheat ears often overlap with each other, which makes wheat ear detection work face a lot of challenges. At the same time, the increasing demand for high accuracy and fast response in wheat spike detection has led to the need for models to be lightweight function with reduced the hardware costs. Therefore, this study proposes a lightweight wheat ear detection model, CML-RTDETR, for efficient and accurate detection of wheat ears in real complex farmland environments. In the model construction, the lightweight network CSPDarknet is firstly introduced as the backbone network of CML-RTDETR to enhance the feature extraction efficiency. In addition, the FM module is cleverly introduced to modify the bottleneck layer in the C2f component, and hybrid feature extraction is realized by spatial and frequency domain splicing to enhance the feature extraction capability of wheat to be tested in complex scenes. Secondly, to improve the model’s detection capability for targets of different scales, a multi-scale feature enhancement pyramid (MFEP) is designed, consisting of GHSDConv, for efficiently obtaining low-level detail information and CSPDWOK for constructing a multi-scale semantic fusion structure. Finally, channel pruning based on Layer-Adaptive Magnitude Pruning (LAMP) scoring is performed to reduce model parameters and runtime memory. The experimental results on the GWHD2021 dataset show that the AP50 of CML-RTDETR reaches 90.5%, which is an improvement of 1.2% compared to the baseline RTDETR-R18 model. Meanwhile, the parameters and GFLOPs have been decreased to 11.03 M and 37.8 G, respectively, resulting in a reduction of 42% and 34%, respectively. Finally, the real-time frame rate reaches 73 fps, significantly achieving parameter simplification and speed improvement. Full article
(This article belongs to the Section Artificial Intelligence)
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17 pages, 3579 KiB  
Article
Source Apportionment of PM2.5 in a Chinese Megacity During Special Periods: Unveiling Impacts of COVID-19 and Spring Festival
by Kejin Tang, Xing Peng, Yuqi Liu, Sizhe Liu, Shihai Tang, Jiang Wu, Shaoxia Wang, Tingting Xie and Tingting Yao
Atmosphere 2025, 16(8), 908; https://doi.org/10.3390/atmos16080908 - 26 Jul 2025
Viewed by 234
Abstract
Long-term source apportionment of PM2.5 during high-pollution periods is essential for achieving sustained reductions in both PM2.5 levels and their health impacts. This study conducted PM2.5 sampling in Shenzhen from January to March over the years 2021–2024 to investigate the [...] Read more.
Long-term source apportionment of PM2.5 during high-pollution periods is essential for achieving sustained reductions in both PM2.5 levels and their health impacts. This study conducted PM2.5 sampling in Shenzhen from January to March over the years 2021–2024 to investigate the long-term impact of coronavirus disease 2019 and the short-term impact of the Spring Festival on PM2.5 levels. The measured average PM2.5 concentration during the research period was 22.5 μg/m3, with organic matter (OM) being the dominant component. Vehicle emissions, secondary sulfate, secondary nitrate, and secondary organic aerosol were identified by receptor model as the primary sources of PM2.5 during the observational periods. The pandemic led to a decrease of between 30% and 50% in the contributions of most anthropogenic sources in 2022 compared to 2021, followed by a rebound. PM2.5 levels in January–March 2024 dropped by 1.4 μg/m3 compared to 2021, mainly due to reduced vehicle emissions, secondary sulfate, fugitive dust, biomass burning, and industrial emissions, reflecting Shenzhen’s and nearby cities’ effective control measures. However, secondary nitrate and fireworks-related emissions rose significantly. During the Spring Festival, PM2.5 concentrations were 23% lower than before the festival, but the contributions of fireworks burning exhibited a marked increase in both 2023 and 2024. Specifically, during intense peak events, fireworks burning triggered sharp, short-term spikes in characteristic metal concentrations, accounting for over 50% of PM2.5 on those peak days. In the future, strict control over vehicle emissions and enhanced management of fireworks burning during special periods like the Spring Festival are necessary to reduce PM2.5 concentration and improve air quality. Full article
(This article belongs to the Special Issue New Insights in Air Quality Assessment: Forecasting and Monitoring)
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38 pages, 2182 KiB  
Article
Smart Grid Strategies for Tackling the Duck Curve: A Qualitative Assessment of Digitalization, Battery Energy Storage, and Managed Rebound Effects Benefits
by Joseph Nyangon
Energies 2025, 18(15), 3988; https://doi.org/10.3390/en18153988 - 25 Jul 2025
Viewed by 381
Abstract
Modern utilities face unprecedented pressures as trends in digital transformation and democratized energy choice empower consumers to engage in peak shaving, flexible load management, and adopt grid automation and intelligence solutions. A powerful confluence of architectural, technological, and socio-economic forces is transforming the [...] Read more.
Modern utilities face unprecedented pressures as trends in digital transformation and democratized energy choice empower consumers to engage in peak shaving, flexible load management, and adopt grid automation and intelligence solutions. A powerful confluence of architectural, technological, and socio-economic forces is transforming the U.S. electricity market, triggering significant changes in electricity production, transmission, and consumption. Utilities are embracing digital twins and repurposed Utility 2.0 concepts—distributed energy resources, microgrids, innovative electricity market designs, real-time automated monitoring, smart meters, machine learning, artificial intelligence, and advanced data and predictive analytics—to foster operational flexibility and market efficiency. This analysis qualitatively evaluates how digitalization, Battery Energy Storage Systems (BESSs), and adaptive strategies to mitigate rebound effects collectively advance smart duck curve management. By leveraging digital platforms for real-time monitoring and predictive analytics, utilities can optimize energy flows and make data-driven decisions. BESS technologies capture surplus renewable energy during off-peak periods and discharge it when demand spikes, thereby smoothing grid fluctuations. This review explores the benefits of targeted digital transformation, BESSs, and managed rebound effects in mitigating the duck curve problem, ensuring that energy efficiency gains translate into actual savings. Furthermore, this integrated approach not only reduces energy wastage and lowers operational costs but also enhances grid resilience, establishing a robust framework for sustainable energy management in an evolving market landscape. Full article
(This article belongs to the Special Issue Policy and Economic Analysis of Energy Systems)
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28 pages, 2549 KiB  
Article
A 25K Wheat SNP Array Revealed the Genetic Diversity and Population Structure of Durum Wheat (Triticum turgidum subsp. durum) Landraces and Cultivars
by Lalise Ararsa, Behailu Mulugeta, Endashaw Bekele, Negash Geleta, Kibrom B. Abreha and Mulatu Geleta
Int. J. Mol. Sci. 2025, 26(15), 7220; https://doi.org/10.3390/ijms26157220 - 25 Jul 2025
Viewed by 1171
Abstract
Durum wheat, the world’s second most cultivated wheat species, is a staple crop, critical for global food security, including in Ethiopia where it serves as a center of diversity. However, climate change and genetic erosion threaten its genetic resources, necessitating genomic studies to [...] Read more.
Durum wheat, the world’s second most cultivated wheat species, is a staple crop, critical for global food security, including in Ethiopia where it serves as a center of diversity. However, climate change and genetic erosion threaten its genetic resources, necessitating genomic studies to support conservation and breeding efforts. This study characterized genome-wide diversity, population structure (STRUCTURE, principal coordinate analysis (PCoA), neighbor-joining trees, analysis of molecular variance (AMOVA)), and selection signatures (FST, Hardy–Weinberg deviations) in Ethiopian durum wheat by analyzing 376 genotypes (148 accessions) using an Illumina Infinium 25K single nucleotide polymorphism (SNP) array. A set of 7842 high-quality SNPs enabled the assessments, comparing landraces with cultivars and breeding populations. Results revealed moderate genetic diversity (mean polymorphism information content (PIC) = 0.17; gene diversity = 0.20) and identified 26 loci under selection, associated with key traits like grain yield, stress tolerance, and disease resistance. AMOVA revealed 80.1% variation among accessions, with no significant differentiation by altitude, region, or spike density. Landraces formed distinct clusters, harboring unique alleles, while admixture suggested gene flow via informal seed exchange. The findings highlight Ethiopia’s rich durum wheat diversity, emphasizing landraces as reservoirs of adaptive alleles for breeding. This study provides genomic insights to guide conservation and the development of climate-resilient cultivars, supporting sustainable wheat production globally. Full article
(This article belongs to the Special Issue Latest Research on Plant Genomics and Genome Editing, 2nd Edition)
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14 pages, 2465 KiB  
Article
Polymerase Chain Reaction-Lateral Flow Strip for Detecting Escherichia coli and Salmonella enterica Harboring blaCTX-M
by Rujirat Hatrongjit, Sumontha Chaisaeng, Kulsatree Sitthichotthumrong, Parichart Boueroy, Peechanika Chopjitt, Ratchadaporn Ungcharoen and Anusak Kerdsin
Antibiotics 2025, 14(8), 745; https://doi.org/10.3390/antibiotics14080745 - 24 Jul 2025
Viewed by 285
Abstract
Background: Salmonella enterica and Escherichia coli are common foodborne pathogens of global concern, particularly due to their antimicrobial resistance, notably to cephalosporins. Objective: This study aimed to evaluate a polymerase chain reaction-based lateral flow strip (PCR-LFS) assay for the detection of Salmonella [...] Read more.
Background: Salmonella enterica and Escherichia coli are common foodborne pathogens of global concern, particularly due to their antimicrobial resistance, notably to cephalosporins. Objective: This study aimed to evaluate a polymerase chain reaction-based lateral flow strip (PCR-LFS) assay for the detection of Salmonella spp. and E. coli harboring the blaCTX-M gene, which confers resistance to third-generation cephalosporins. Methods: Two duplex PCRs (dPCR) were established to detect E. coli-harboring blaCTX-M (set 1) and Salmonella-harboring blaCTX-M (set 2). 600 bacterial isolates and raw pork mince spiked with blaCTX-M-harboring E. coli and Salmonella were used to evaluated. Results: Both dPCR assays successfully detected blaCTX-M-positive E. coli or Salmonella strains, while strains lacking the gene showed no amplification. Non-E. coli and non-Salmonella strains were PCR-negative unless they carried blaCTX-M. The dPCR-LFS showed 100% validity including accuracy, sensitivity, specificity, positive predictive value, and negative predictive value for both E. coli or Salmonella spp. harboring or lacking blaCTX-M. The assay accurately detected target strains without cross-reactivity with other bacteria or antimicrobial resistance genes. Cohen’s Kappa coefficient indicated perfect agreement (κ = 1), reflecting the high reliability of the dPCR-LFS. The assay could detect as low as 25 CFU/mL for blaCTX-M-positive E. coli and 40 CFU/mL for blaCTX-M-positive Salmonella in spiked raw pork mince. Conclusions: This assay is rapid, easy to interpret, and suitable for large-scale screening in surveillance programs. Full article
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19 pages, 3051 KiB  
Article
Design of a Current-Mode OTA-Based Memristor Emulator for Neuromorphic Medical Application
by Amel Neifar, Imen Barraj, Hassen Mestiri and Mohamed Masmoudi
Micromachines 2025, 16(8), 848; https://doi.org/10.3390/mi16080848 - 24 Jul 2025
Viewed by 283
Abstract
This study presents transistor-level simulation results for a novel memristor emulator circuit. The design incorporates an inverter and a current-mode-controlled operational transconductance amplifier to stabilize the output voltage. Transient performance is evaluated across a 20 MHz to 100 MHz frequency range. Simulations using [...] Read more.
This study presents transistor-level simulation results for a novel memristor emulator circuit. The design incorporates an inverter and a current-mode-controlled operational transconductance amplifier to stabilize the output voltage. Transient performance is evaluated across a 20 MHz to 100 MHz frequency range. Simulations using 0.18 μm TSMC technology confirm the circuit’s functionality, demonstrating a power consumption of 0.1 mW at a 1.2 V supply. The memristor model’s reliability is verified through corner simulations, along with Monte Carlo and temperature variation tests. Furthermore, the emulator is applied in a Memristive Integrate-and-Fire neuron circuit, a CMOS-based system that replicates biological neuron behavior for spike generation, enabling ultra-low-power computing and advanced processing in retinal prosthesis applications. Full article
(This article belongs to the Section E:Engineering and Technology)
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28 pages, 5780 KiB  
Article
Multiscale Modeling and Dynamic Mutational Profiling of Binding Energetics and Immune Escape for Class I Antibodies with SARS-CoV-2 Spike Protein: Dissecting Mechanisms of High Resistance to Viral Escape Against Emerging Variants
by Mohammed Alshahrani, Vedant Parikh, Brandon Foley and Gennady Verkhivker
Viruses 2025, 17(8), 1029; https://doi.org/10.3390/v17081029 - 23 Jul 2025
Viewed by 511
Abstract
The rapid evolution of SARS-CoV-2 has underscored the need for a detailed understanding of antibody binding mechanisms to combat immune evasion by emerging variants. In this study, we investigated the interactions between Class I neutralizing antibodies—BD55-1205, BD-604, OMI-42, P5S-1H1, and P5S-2B10—and the receptor-binding [...] Read more.
The rapid evolution of SARS-CoV-2 has underscored the need for a detailed understanding of antibody binding mechanisms to combat immune evasion by emerging variants. In this study, we investigated the interactions between Class I neutralizing antibodies—BD55-1205, BD-604, OMI-42, P5S-1H1, and P5S-2B10—and the receptor-binding domain (RBD) of the SARS-CoV-2 spike protein using multiscale modeling, which combined molecular simulations with the ensemble-based mutational scanning of the binding interfaces and binding free energy computations. A central theme emerging from this work is that the unique binding strength and resilience to immune escape of the BD55-1205 antibody are determined by leveraging a broad epitope footprint and distributed hotspot architecture, additionally supported by backbone-mediated specific interactions, which are less sensitive to amino acid substitutions and together enable exceptional tolerance to mutational escape. In contrast, BD-604 and OMI-42 exhibit localized binding modes with strong dependence on side-chain interactions, rendering them particularly vulnerable to escape mutations at K417N, L455M, F456L and A475V. Similarly, P5S-1H1 and P5S-2B10 display intermediate behavior—effective in some contexts but increasingly susceptible to antigenic drift due to narrower epitope coverage and concentrated hotspots. Our computational predictions show strong agreement with experimental deep mutational scanning data, validating the accuracy of the models and reinforcing the value of binding hotspot mapping in predicting antibody vulnerability. This work highlights that neutralization breadth and durability are not solely dictated by epitope location, but also by how binding energy is distributed across the interface. The results provide atomistic insight into mechanisms driving resilience to immune escape for broadly neutralizing antibodies targeting the ACE2 binding interface—which stems from cumulative effects of structural diversity in binding contacts, redundancy in interaction patterns and reduced vulnerability to mutation-prone positions. Full article
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21 pages, 3103 KiB  
Article
Systemic and Mucosal Humoral Immune Responses to Lumazine Synthase 60-mer Nanoparticle SARS-CoV-2 Vaccines
by Cheng Cheng, Jeffrey C. Boyington, Edward K. Sarfo, Cuiping Liu, Danealle K. Parchment, Andrea Biju, Angela R. Corrigan, Lingshu Wang, Wei Shi, Yi Zhang, Yaroslav Tsybovsky, Tyler Stephens, Adam S. Olia, Audrey S. Carson, Syed M. Moin, Eun Sung Yang, Baoshan Zhang, Wing-Pui Kong, Peter D. Kwong, John R. Mascola and Theodore C. Piersonadd Show full author list remove Hide full author list
Vaccines 2025, 13(8), 780; https://doi.org/10.3390/vaccines13080780 - 23 Jul 2025
Viewed by 459
Abstract
Background: Vaccines that stimulate systemic and mucosal immunity to a level required to prevent SARS-CoV-2 infection and transmission are an unmet need. Highly protective hepatitis B and human papillomavirus nanoparticle vaccines highlight the potential of multivalent nanoparticle vaccine platforms to provide enhanced immunity. [...] Read more.
Background: Vaccines that stimulate systemic and mucosal immunity to a level required to prevent SARS-CoV-2 infection and transmission are an unmet need. Highly protective hepatitis B and human papillomavirus nanoparticle vaccines highlight the potential of multivalent nanoparticle vaccine platforms to provide enhanced immunity. Here, we report the construction and characterization of self-assembling 60-subunit icosahedral nanoparticle SARS-CoV-2 vaccines using the bacterial enzyme lumazine synthase (LuS). Methods and Results: Nanoparticles displaying prefusion-stabilized SARS-CoV-2 spike ectodomains fused to the surface-exposed amino terminus of LuS were designed using structure-guided approaches. Negative stain-electron microscopy studies of purified nanoparticles were consistent with self assembly into 60-mer nanoparticles displaying 20 spike trimers. After two intramuscular doses, these purified spike-LuS nanoparticles elicited significantly higher SARS-CoV-2 neutralizing activity than spike trimers in vaccinated mice. Furthermore, intramuscular DNA priming and intranasal boosting with a SARS-CoV-2 LuS nanoparticle vaccine stimulated mucosal IgA responses. Conclusion: These data identify LuS nanoparticles as highly immunogenic SARS-CoV-2 vaccine candidates and support the further development of this platform against SARS-CoV-2 and its emerging variants. Full article
(This article belongs to the Special Issue Novel Vaccines and Vaccine Technologies for Emerging Infections)
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Article
Structural Features and In Vitro Antiviral Activities of Fungal Metabolites Sphaeropsidins A and B Against Bovine Coronavirus
by Luca Del Sorbo, Maria Michela Salvatore, Clementina Acconcia, Rosa Giugliano, Giovanna Fusco, Massimiliano Galdiero, Violetta Iris Vasinioti, Maria Stella Lucente, Paolo Capozza, Annamaria Pratelli, Luigi Russo, Rosa Iacovino, Anna Andolfi and Filomena Fiorito
Int. J. Mol. Sci. 2025, 26(15), 7045; https://doi.org/10.3390/ijms26157045 - 22 Jul 2025
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Abstract
The scientific community’s interest in natural compounds with antiviral properties has considerably increased after the emergence of the severe acute respiratory syndrome coronavirus (SARS-CoV-2), especially for their potential use in the treatment of the COVID-19 infection. From this perspective, bovine coronavirus (BCoV), member [...] Read more.
The scientific community’s interest in natural compounds with antiviral properties has considerably increased after the emergence of the severe acute respiratory syndrome coronavirus (SARS-CoV-2), especially for their potential use in the treatment of the COVID-19 infection. From this perspective, bovine coronavirus (BCoV), member of the genus β-CoV, represents a valuable virus model to study human β-CoVs, bypassing the risks of handling highly pathogenic and contagious viruses. Pimarane diterpenes are a significant group of secondary metabolites produced by phytopathogenic fungi, including several Diplodia species. Among the members of this class of natural products, sphaeropsidin A (SphA) and its analog sphaeropsidin B (SphB) are well known for their bioactivities, such as antimicrobial, insecticidal, herbicidal, and anticancer. In this study, the antiviral effects of SphA and SphB were evaluated for the first time on bovine (MDBK) cells infected with BCoV. Our findings showed that both sphaeropsidins significantly increased cell viability in infected cells. These substances also caused substantial declines in the virus yield and in the levels of the viral spike S protein. Interestingly, during the treatment, a cellular defense mechanism was detected in the downregulation of the aryl hydrocarbon receptor (AhR) signaling, which is affected by BCoV infection. We also observed that the presence of SphA and SphB determined the deacidification of the lysosomal environment in infected cells, which may be related to their antiviral activities. In addition, in silico investigations have been performed to elucidate the molecular mechanism governing the recognition of bovine AhR (bAhR) by Sphs. Molecular docking studies revealed significant insights into the structural determinants driving the bAhR binding by the examined compounds. Hence, in vitro and in silico results demonstrated that SphA and SphB are promising drug candidates for the development of efficient therapies able to fight a β-CoV-like BCoV during infection. Full article
(This article belongs to the Special Issue Structure, Function and Dynamics in Proteins: 3rd Edition)
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