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Search Results (537)

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21 pages, 510 KiB  
Review
IoT and Machine Learning for Smart Bird Monitoring and Repellence: Techniques, Challenges, and Opportunities
by Samson O. Ooko, Emmanuel Ndashimye, Evariste Twahirwa and Moise Busogi
IoT 2025, 6(3), 46; https://doi.org/10.3390/iot6030046 (registering DOI) - 7 Aug 2025
Abstract
The activities of birds present increasing challenges in agriculture, aviation, and environmental conservation. This has led to economic losses, safety risks, and ecological imbalances. Attempts have been made to address the problem, with traditional deterrent methods proving to be labour-intensive, environmentally unfriendly, and [...] Read more.
The activities of birds present increasing challenges in agriculture, aviation, and environmental conservation. This has led to economic losses, safety risks, and ecological imbalances. Attempts have been made to address the problem, with traditional deterrent methods proving to be labour-intensive, environmentally unfriendly, and ineffective over time. Advances in artificial intelligence (AI) and the Internet of Things (IoT) present opportunities for enabling automated real-time bird detection and repellence. This study reviews recent developments (2020–2025) in AI-driven bird detection and repellence systems, emphasising the integration of image, audio, and multi-sensor data in IoT and edge-based environments. The Preferred Reporting Items for Systematic Reviews and Meta-Analyses framework was used, with 267 studies initially identified and screened from key scientific databases. A total of 154 studies met the inclusion criteria and were analysed. The findings show the increasing use of convolutional neural networks (CNNs), YOLO variants, and MobileNet in visual detection, and the growing use of lightweight audio-based models such as BirdNET, MFCC-based CNNs, and TinyML frameworks for microcontroller deployment. Multi-sensor fusion is proposed to improve detection accuracy in diverse environments. Repellence strategies include sound-based deterrents, visual deterrents, predator-mimicking visuals, and adaptive AI-integrated systems. Deployment success depends on edge compatibility, power efficiency, and dataset quality. The limitations of current studies include species-specific detection challenges, data scarcity, environmental changes, and energy constraints. Future research should focus on tiny and lightweight AI models, standardised multi-modal datasets, and intelligent, behaviour-aware deterrence mechanisms suitable for precision agriculture and ecological monitoring. Full article
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20 pages, 2079 KiB  
Article
Spatiotemporal Patterns of Avian Species Richness Across Climatic Regions
by Çağdan Uyar, Serkan Özdemir, Dalia Perkumienė, Marius Aleinikovas, Benas Šilinskas and Mindaugas Škėma
Diversity 2025, 17(8), 557; https://doi.org/10.3390/d17080557 - 7 Aug 2025
Abstract
This study highlights the spatial, seasonal, and climatic variations in bird species richness across Türkiye, a country with rich avian richness situated at the intersection of major migratory routes. Bird species richness was calculated for each province. Differences between regions, Köppen–Geiger climate classes, [...] Read more.
This study highlights the spatial, seasonal, and climatic variations in bird species richness across Türkiye, a country with rich avian richness situated at the intersection of major migratory routes. Bird species richness was calculated for each province. Differences between regions, Köppen–Geiger climate classes, and seasons were analyzed using the Kruskal–Wallis method. Non-parametric analysis of longitudinal data in factorial experiments was also employed to determine seasonal differences within regions and climate classes. The results revealed significant spatial variations in species richness, particularly between temperate and cold climate regions. While seasonal differences were generally less pronounced, they were critical for both migratory and resident bird species. Wetlands, coastal areas, and transitional habitats were identified as biodiversity hotspots for both resident and migratory birds. This study underscores the need to integrate regional, climatic, and seasonal variations into ecosystem-based management plans. Protecting critical habitats, enhancing connectivity through ecological corridors, and adopting adaptive conservation strategies are essential for sustaining Türkiye’s rich avian diversity. These results provide valuable insights for conservation planning and emphasize the importance of addressing spatial and seasonal dynamics to ensure long-term biodiversity preservation. Full article
(This article belongs to the Special Issue Diversity in 2025)
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14 pages, 3099 KiB  
Article
Identification of Keystone Plant Species for Avian Foraging and Nesting in Beijing’s Forest Ecosystems: Implications for Urban Forest Bird Conservation
by Lele Lin, Yongjian Zhao, Chao Yuan, Yushu Zhang, Siyu Qiu and Jixin Cao
Animals 2025, 15(15), 2271; https://doi.org/10.3390/ani15152271 - 4 Aug 2025
Viewed by 191
Abstract
Urban wildlife conservation is emerging as a critical component of sustainable city ecosystems. Rather than simply increasing tree abundance or species richness, conservation management should focus on key species. In this research, Xishan Forest Park in Beijing was chosen as a case study. [...] Read more.
Urban wildlife conservation is emerging as a critical component of sustainable city ecosystems. Rather than simply increasing tree abundance or species richness, conservation management should focus on key species. In this research, Xishan Forest Park in Beijing was chosen as a case study. Our aim was to identify keystone taxa critical for avian foraging and nesting during the breeding season. We performed a network analysis linking bird species, their diets, and nest plants. Dietary components were detected using DNA metabarcoding conducted with avian fecal samples. Nest plants were identified via transect surveys. Two indices of the network, degree and weighted mean degree, were calculated to evaluate the importance of the dietary and nest plant species. We identified 13 bird host species from 107 fecal samples and 14 bird species from 107 nest observations. Based on the degree indices, fruit trees Morus and Prunus were detected as key food sources, exhibiting both the highest degree (degree = 9, 9) and weighted mean degree (lnwMD = 5.21, 4.63). Robinia pseudoacacia provided predominant nesting sites, with a predominant degree of 7. A few taxa, such as Styphnolobium japonicum and Rhamnus parvifolia, served dual ecological significance as both essential food sources and nesting substrates. Scrublands, as a unique habitat type, provided nesting sites and food for small-bodied birds. Therefore, targeted management interventions are recommended to sustain or enhance these keystone resource species and to maintain the multi-layered vertical vegetation structure to preserve the diverse habitats of birds. Full article
(This article belongs to the Section Wildlife)
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15 pages, 6769 KiB  
Article
Pine Cones in Plantations as Refuge and Substrate of Lichens and Bryophytes in the Tropical Andes
by Ángel Benítez
Diversity 2025, 17(8), 548; https://doi.org/10.3390/d17080548 - 1 Aug 2025
Viewed by 194
Abstract
Deforestation driven by plantations, such as Pinus patula Schiede ex Schltdl. et Cham., is a major cause of biodiversity and functional loss in tropical ecosystems. We assessed the diversity and composition of lichens and bryophytes in four size categories of pine cones, small [...] Read more.
Deforestation driven by plantations, such as Pinus patula Schiede ex Schltdl. et Cham., is a major cause of biodiversity and functional loss in tropical ecosystems. We assessed the diversity and composition of lichens and bryophytes in four size categories of pine cones, small (3–5 cm), medium (5.1–8 cm), large (8.1–10 cm), and very large (10.1–13 cm), with a total of 150 pine cones examined, where the occurrence and cover of lichen and bryophyte species were recorded. Identification keys based on morpho-anatomical features were used to identify lichens and bryophytes. In addition, for lichens, secondary metabolites were tested using spot reactions with potassium hydroxide, commercial bleach, and Lugol’s solution, and by examining the specimens under ultraviolet light. To evaluate the effect of pine cone size on species richness, the Kruskal–Wallis test was conducted, and species composition among cones sizes was compared using multivariate analysis. A total of 48 taxa were recorded on cones, including 41 lichens and 7 bryophytes. A total of 39 species were found on very large cones, 37 species on large cones, 35 species on medium cones, and 24 species on small cones. This is comparable to the diversity found in epiphytic communities of pine plantations. Species composition was influenced by pine cone size, differing from small in comparison with very large ones. The PERMANOVA analyses revealed that lichen and bryophyte composition varied significantly among the pine cone categories, explaining 21% of the variance. Very large cones with specific characteristics harbored different communities than those on small pine cones. The presence of lichen and bryophyte species on the pine cones from managed Ecuadorian P. patula plantations may serve as refugia for the conservation of biodiversity. Pine cones and their scales (which range from 102 to 210 per cone) may facilitate colonization of new areas by dispersal agents such as birds and rodents. The scales often harbor lichen and bryophyte propagules as well as intact thalli, which can be effectively dispersed, when the cones are moved. The prolonged presence of pine cones in the environment further enhances their role as possible dispersal substrates over extended periods. To our knowledge, this is the first study worldwide to examine pine cones as substrates for lichens and bryophytes, providing novel insights into their potential role as microhabitats within P. patula plantations and forest landscapes across both temperate and tropical zones. Full article
(This article belongs to the Section Microbial Diversity and Culture Collections)
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18 pages, 1618 KiB  
Article
Native Grass Enhances Bird, Dragonfly, Butterfly and Plant Biodiversity Relative to Conventional Crops in Midwest, USA
by Steven I. Apfelbaum, Susan M. Lehnhardt, Michael Boston, Lea Daly, Gavin Pinnow, Kris Gillespie and Donald M. Waller
Agriculture 2025, 15(15), 1666; https://doi.org/10.3390/agriculture15151666 - 1 Aug 2025
Viewed by 201
Abstract
Conspicuous declines in native grassland habitats have triggered sharp reductions in grassland birds, dragonflies, butterflies, and native plant populations and diversity. We compared these biotic groups among three crop type treatments: corn, alfalfa, and a perennial native grass, Virginia wild rye, (Elymus [...] Read more.
Conspicuous declines in native grassland habitats have triggered sharp reductions in grassland birds, dragonflies, butterflies, and native plant populations and diversity. We compared these biotic groups among three crop type treatments: corn, alfalfa, and a perennial native grass, Virginia wild rye, (Elymus virginicus L.) or VWR. This crop type had 2-3X higher bird, dragonfly, butterfly and plant species richness, diversity, and faunal abundance relative to alfalfa and corn types. VWR crop fields also support more obligate grassland bird species and higher populations of dragonfly and butterfly species associated with grasslands and wet meadows. In contrast, the corn and alfalfa types support few or no obligatory grassland birds and mostly non-native insects such as the white cabbage looper (Artogeia rapae L.), the common yellow sulfur butterfly (Colias philodice Godart.), and the mobile and migratory common green darner dragonfly (Anax junius Drury.). In sum, the VWR perennial native grass crop type offers a special opportunity to improve the diversity and abundance of grassland bird species, beneficial insect species, and many native plant species within agricultural landscapes. Full article
(This article belongs to the Section Agricultural Systems and Management)
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12 pages, 9023 KiB  
Article
The Impact of Vegetation Structure on Shaping Urban Avian Communities in Chaoyang District Beijing, China
by Anees Ur Rahman, Kamran Ullah, Shumaila Batool, Rashid Rasool Rabbani Ismaili and Liping Yan
Animals 2025, 15(15), 2214; https://doi.org/10.3390/ani15152214 - 28 Jul 2025
Viewed by 281
Abstract
This study examines the impact of vegetation structure on bird species richness and diversity across four urban parks in Chaoyang District, Beijing. Throughout the year, using the Point Count Method (PCM), a total of 68 bird species and 4279 individual observations were recorded, [...] Read more.
This study examines the impact of vegetation structure on bird species richness and diversity across four urban parks in Chaoyang District, Beijing. Throughout the year, using the Point Count Method (PCM), a total of 68 bird species and 4279 individual observations were recorded, with surveys conducted across all four seasons to capture seasonal variations. The parks with more complex vegetation, such as those with a higher tree canopy cover of species like poplars, ginkgo, and Chinese pines, exhibited higher bird species richness. For example, Olympic Forest Park, with its dense vegetation structure, hosted 42 species, whereas parks with less diverse vegetation supported fewer species. An analysis using PERMANOVA revealed that bird communities in the four parks were significantly different from each other (F = 2.76, p = 0.04075), and every comparison between parks showed significant differences as well (p < 0.001). Variations in the arrangement and level of disturbance within different plant communities likely cause such differences. Principal component analysis (PCA) identified tree canopy cover and shrub density as key drivers of bird diversity. These findings underscore the importance of preserving urban green spaces, particularly those with a diverse range of native tree species, to conserve biodiversity and mitigate the adverse effects of urbanisation. Effective vegetation management strategies can enhance avian habitats and provide ecological and cultural benefits in urban environments. Full article
(This article belongs to the Section Birds)
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15 pages, 2012 KiB  
Article
A Broad Wildlife Survey of Influenza A Virus in the Orinoco Flooded Savannas from Colombia: New Reports and Perspectives
by Astrid Katerine Cárdenas Parra, Juan Pablo Barón Vera, Iván Fernando Calixto-Botía, Nubia E. Matta, Oscar Andrés Rodríguez-Fandiño and Lady Johana Correa-Higuera
Animals 2025, 15(15), 2201; https://doi.org/10.3390/ani15152201 - 26 Jul 2025
Viewed by 1237
Abstract
Influenza A virus (IAV) poses a significant threat to animal and public health due to its wide host range and potential for interspecies transmission. This study aimed to conduct a comprehensive survey of IAV in a wide range of wildlife in the Orinoco [...] Read more.
Influenza A virus (IAV) poses a significant threat to animal and public health due to its wide host range and potential for interspecies transmission. This study aimed to conduct a comprehensive survey of IAV in a wide range of wildlife in the Orinoco flooded savannas of Colombia, a region of high biodiversity and a strategic location for monitoring viral transmission. Sampling was conducted during both dry and rainy seasons in two localities. ELISA and qPCR targeted 2028 individuals from 173 bird, mammal, and reptile species, 124 of them without previously published reports. There were positive results for 54 species, with 34 representing first-time world reports. Of the qPCR, 13.4% were positive from birds, and 2.9% were from mammals. Seropositivity was identified in 5.7% of birds, 2.7% of mammals, and 1.3% of reptiles. These findings underscore the potential role of these diverse species as reservoirs or incidental hosts in the transmission cycle of IAV, emphasizing the need for expanded research on less-studied taxa and their ecological interactions. The results also contribute to our understanding of the epidemiology of IAV in the Neotropics and can inform future surveillance and mitigation strategies. Full article
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7 pages, 1091 KiB  
Communication
New Records of Feather Mites (Acariformes: Analgoidea) on Passerines (Aves: Passeriformes) from Greenland
by Nevena Kolarova, Christoffer Sjöholm, Jannika Boström, Susanne Åkesson and Mihaela Ilieva
Birds 2025, 6(3), 38; https://doi.org/10.3390/birds6030038 - 18 Jul 2025
Viewed by 255
Abstract
Feather mites play an important role in bird communities, covering a wide spectrum of associations with their hosts, ranging from parasitic to mutualistic relations. As a result of long co-evolution with their warm-blooded hosts, this diverse group of arthropods can be found in [...] Read more.
Feather mites play an important role in bird communities, covering a wide spectrum of associations with their hosts, ranging from parasitic to mutualistic relations. As a result of long co-evolution with their warm-blooded hosts, this diverse group of arthropods can be found in a wide range of environments where their hosts occur, including the high Arctic. The feather mite fauna of Greenland is poorly known. Herein, we present new data on feather mites found on three species of passerine birds, which were captured on Disko Island (Qeqertarsuaq), West Greenland. The feather mite species Analges longispinosus was found on Snow Bunting (Plectrophenax nivalis); Proctophyllodes plectrophenax on Snow Bunting and Lapland Longspur (Calcarius lapponicus); and Proctophyllodes hipposideros on Northern Wheatear (Oenanthe oenanthe). The two Proctophyllodes species represent new records for Greenland. Further studies are needed to reveal the diversity of feather mite species in this remote Arctic region. Full article
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19 pages, 2287 KiB  
Article
Bird Community Structure Changes as Araucaria Forest Cover Increases in the Highlands of Southeastern Brazil
by Carla Suertegaray Fontana, Lucilene Inês Jacoboski, Jonas Rafael Rodrigues Rosoni, Juliana Lopes da Silva, Filipe Augusto Pasa Bernardi, Pamela Eliana Malmoria, Christian Beier and Sandra Maria Hartz
Birds 2025, 6(3), 37; https://doi.org/10.3390/birds6030037 - 16 Jul 2025
Viewed by 891
Abstract
The Brazilian Araucaria Forest (AF) now covers only 1% of its original extent due to significant degradation, making conservation a challenge. The AF occurs in a mosaic alongside grassland and Atlantic Forest ecosystems, influencing bird species’ distribution through ecological processes. We compared the [...] Read more.
The Brazilian Araucaria Forest (AF) now covers only 1% of its original extent due to significant degradation, making conservation a challenge. The AF occurs in a mosaic alongside grassland and Atlantic Forest ecosystems, influencing bird species’ distribution through ecological processes. We compared the composition and functional diversity of the bird community along a gradient of AF cover in a protected area (Pró-Mata Private Natural Heritage Reserve) in southern Brazil. Bird sampling was conducted using MacKinnon lists along five trails with different histories of vegetation suppression, based on forest cover estimates from landscape imagery. Birds were functionally classified based on morphological and ecological traits. We recorded 191 bird species in total. We found higher bird richness in trails with less forest cover, while functional diversity responded inversely to vegetation cover. Bird species composition shifted from more open-habitat specialists to more forest specialists with the increasing forest cover and vegetation structural complexity. These findings highlight the ecological importance of maintaining vegetation heterogeneity, as vegetation mosaics enhance avian species richness and support a broader range of functional traits and ecosystem processes. We recommend the conservation of Araucaria Forest–grassland mosaics as a strategic approach to support multidimensional biodiversity and sustain key ecological functions in southern Brazil. Full article
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21 pages, 15035 KiB  
Article
Birds, Bees, and Botany: Measuring Urban Biodiversity After Nature-Based Solutions Implementation
by Mónica Q. Pinto, Simone Varandas, Emmanuelle Cohen-Shacham and Edna Cabecinha
Diversity 2025, 17(7), 486; https://doi.org/10.3390/d17070486 - 16 Jul 2025
Viewed by 439
Abstract
Nature-based Solutions (NbS) are increasingly adopted in urban settings to restore ecological functions and enhance biodiversity. This study evaluates the effects of NbS interventions on bird, insect, and plant communities in the Cavalum Valley urban green area, Penafiel (northern Portugal). Over a three-year [...] Read more.
Nature-based Solutions (NbS) are increasingly adopted in urban settings to restore ecological functions and enhance biodiversity. This study evaluates the effects of NbS interventions on bird, insect, and plant communities in the Cavalum Valley urban green area, Penafiel (northern Portugal). Over a three-year period, systematic field surveys assessed changes in species richness, abundance, and ecological indicators following actions such as riparian restoration, afforestation, habitat diversification, and invasive species removal. Results revealed a marked increase in bird overall abundance from 538 to 941 individuals and in average pollinator population size from 9.25 to 12.20. Plant diversity also improved, with a rise in native and RELAPE-listed species (5.23%). Functional group analyses underscored the importance of vegetative structure in supporting varied foraging and nesting behaviours. These findings highlight the effectiveness of integrated NbS in enhancing biodiversity and ecological resilience in urban landscapes while reinforcing the need for long-term monitoring to guide adaptive management and conservation planning. Future work could evaluate ecological resilience thresholds and community participation in citizen science monitoring. Full article
(This article belongs to the Section Biodiversity Conservation)
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22 pages, 3917 KiB  
Article
Fragmented Habitats, Fragmented Functions: Unveiling the Role of Habitat Structure in Andean Bird Communities
by Valentina Ramos-Mosquera, Edwin López-Delgado and Miguel Moreno-Palacios
Ecologies 2025, 6(3), 52; https://doi.org/10.3390/ecologies6030052 - 11 Jul 2025
Viewed by 910
Abstract
Understanding the processes that shape biodiversity patterns is an important challenge in ecology. Land-use change is often recognized as a pivotal factor influencing biodiversity at large scales, with habitat heterogeneity being one of the most critical drivers of community composition and diversity. In [...] Read more.
Understanding the processes that shape biodiversity patterns is an important challenge in ecology. Land-use change is often recognized as a pivotal factor influencing biodiversity at large scales, with habitat heterogeneity being one of the most critical drivers of community composition and diversity. In this study, we evaluate the influence of landscape structure on the functional diversity of bird assemblages in the Upper Magdalena River Valley, Colombia. We used Generalized Linear Models to assess the effects of landscape structure on functional diversity, incorporating landscape metrics such as the number of patches, patch area and shape, and Shannon’s diversity and evenness indices. Additionally, we analyzed the influence of landscape structure on functional beta diversity—including its components of functional turnover and nestedness—using a distance-based redundancy analysis. We also examined the relationship between species traits and landscape metrics through a RLQ and fourth-corner analysis. We found a negative effect of habitat loss and fragmentation on functional diversity. Our results show that bird assemblages exhibit higher diversity in non-fragmented landscapes (>75% forest area; <1% urban cover), retaining greater functional richness and functional evenness (FRic > 0.24; FEve > 0.60). Moreover, non-fragmented landscapes seem to support a higher number of nectarivores and forest specialist species. In contrast, bird functional richness decreased with landscape fragmentation (FRic < 0.07). These findings highlight the importance of forest conservation for maintaining species persistence, ecological processes, and ecosystem services provided by birds. Full article
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33 pages, 2301 KiB  
Review
An Integrative Approach to Assessing the Impact of Mercury (Hg) on Avian Behaviour: From Molecule to Movement
by Dora Bjedov, Mirta Sudarić Bogojević, Jorge Bernal-Alviz, Goran Klobučar, Jean-Paul Bourdineaud, K. M. Aarif and Alma Mikuška
J. Xenobiot. 2025, 15(4), 117; https://doi.org/10.3390/jox15040117 - 9 Jul 2025
Viewed by 547
Abstract
Mercury (Hg) pollution is a widespread ecological threat with sublethal effects on wildlife. Birds, due to their ecological diversity and sensitivity, serve as effective models for evaluating the behavioural impacts of Hg exposure. This review applies Tinbergen’s four questions: causation, ontogeny, function, and [...] Read more.
Mercury (Hg) pollution is a widespread ecological threat with sublethal effects on wildlife. Birds, due to their ecological diversity and sensitivity, serve as effective models for evaluating the behavioural impacts of Hg exposure. This review applies Tinbergen’s four questions: causation, ontogeny, function, and evolution, as an integrative framework. Mechanistically, Hg disrupts neuroendocrine pathways, gene expression, immune function, and hormone regulation, leading to behavioural changes such as reduced foraging, altered parental care, and impaired predator avoidance. Early-life exposure affects neural development, learning, and social behaviour into adulthood. Functionally, these changes reduce fitness by compromising reproduction and survival. Phylogenetic comparisons show interspecific variability, with piscivorous and insectivorous birds exhibiting high Hg burdens and sensitivity, linked to ecological roles and exposure. Behavioural responses often precede physiological or demographic effects, highlighting their value as early indicators. Both field and laboratory studies show that even low Hg concentrations can alter behaviour, though outcomes vary by species, life stage, and exposure route. Integrating behavioural endpoints into ecotoxicological risk assessments is essential to improve conservation strategies and understanding of sublethal pollutant effects on wildlife. Full article
(This article belongs to the Section Ecotoxicology)
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23 pages, 3759 KiB  
Review
Highly Pathogenic Avian Influenza (H5N1) Clade 2.3.4.4b in Cattle: A Rising One Health Concern
by Ivan Camilo Sanchez-Rojas, D. Katterine Bonilla-Aldana, Catherin Lorena Solarte-Jimenez, Jorge Luis Bonilla-Aldana, Jaime David Acosta-España and Alfonso J. Rodriguez-Morales
Animals 2025, 15(13), 1963; https://doi.org/10.3390/ani15131963 - 3 Jul 2025
Viewed by 1036
Abstract
Highly pathogenic avian influenza (HPAI) H5N1, particularly clade 2.3.4.4b, has demonstrated an unprecedented capacity for cross-species transmission, with recent reports confirming its presence in dairy cattle in the United States of America (USA) in 2024. This unexpected spillover challenges traditional understanding of the [...] Read more.
Highly pathogenic avian influenza (HPAI) H5N1, particularly clade 2.3.4.4b, has demonstrated an unprecedented capacity for cross-species transmission, with recent reports confirming its presence in dairy cattle in the United States of America (USA) in 2024. This unexpected spillover challenges traditional understanding of the virus’s host range and raises serious public health and veterinary concerns. Infected cattle presented with clinical signs such as decreased milk production, thickened or discolored milk, respiratory issues, and lethargy. Pathological findings revealed inflammation of the mammary glands and the detection of a virus in nasal secretions and raw milk, suggesting a potential for both intra- and interspecies transmission. While the current risk of human-to-human transmission remains low, the detection of H5N1 in a human exposed to infected cattle highlights the need for heightened surveillance and protective measures. Moreover, the presence of infectious viruses in the food chain, particularly in unpasteurized milk, introduces a new dimension of zoonotic risk. This review synthesizes emerging evidence on the epidemiology, pathology, diagnostic findings, and zoonotic implications of HPAI H5N1 infection in cattle. It also highlights the importance of genomic surveillance, intersectoral collaboration, and One Health approaches in managing this evolving threat. As the virus continues to circulate and adapt across diverse hosts, including wild birds, domestic poultry, and now mammals, the potential for reassortment and emergence of novel strains remains a significant concern. Immediate actions to strengthen biosecurity, monitor viral evolution, and protect both animal and human populations are critical to mitigate the global risk posed by this expanding panzootic. Full article
(This article belongs to the Special Issue Infection Immunity, Diagnosis and Prevention of Avian Influenza)
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10 pages, 687 KiB  
Data Descriptor
A DNA Barcode Dataset for the Aquatic Fauna of the Panama Canal: Novel Resources for Detecting Faunal Change in the Neotropics
by Kristin Saltonstall, Rachel Collin, Celestino Aguilar, Fernando Alda, Laura M. Baldrich-Mora, Victor Bravo, María Fernanda Castillo, Sheril Castro, Luis F. De León, Edgardo Díaz-Ferguson, Humberto A. Garcés, Eyda Gómez, Rigoberto G. González, Maribel A. González-Torres, Hector M. Guzman, Alexandra Hiller, Roberto Ibáñez, César Jaramillo, Klara L. Kaiser, Yulang Kam, Mayra Lemus Peralta, Oscar G. Lopez, Maycol E. Madrid C., Matthew J. Miller, Natalia Ossa-Hernandez, Ruth G. Reina, D. Ross Robertson, Tania E. Romero-Gonzalez, Milton Sandoval, Oris Sanjur, Carmen Schlöder, Ashley E. Sharpe, Diana Sharpe, Jakob Siepmann, David Strasiewsky, Mark E. Torchin, Melany Tumbaco, Marta Vargas, Miryam Venegas-Anaya, Benjamin C. Victor and Gustavo Castellanos-Galindoadd Show full author list remove Hide full author list
Data 2025, 10(7), 108; https://doi.org/10.3390/data10070108 - 2 Jul 2025
Viewed by 609
Abstract
DNA metabarcoding is a powerful biodiversity monitoring tool, enabling simultaneous assessments of diverse biological communities. However, its accuracy depends on the reliability of reference databases that assign taxonomic identities to obtained sequences. Here we provide a DNA barcode dataset for aquatic fauna of [...] Read more.
DNA metabarcoding is a powerful biodiversity monitoring tool, enabling simultaneous assessments of diverse biological communities. However, its accuracy depends on the reliability of reference databases that assign taxonomic identities to obtained sequences. Here we provide a DNA barcode dataset for aquatic fauna of the Panama Canal, a region that connects the Western Atlantic and Eastern Pacific oceans. This unique setting creates opportunities for trans-oceanic dispersal while acting as a modern physical dispersal barrier for some terrestrial organisms. We sequenced 852 specimens from a diverse array of taxa (e.g., fishes, zooplankton, mollusks, arthropods, reptiles, birds, and mammals) using COI, and in some cases, 12S and 16S barcodes. These data were collected for a variety of studies, many of which have sought to understand recent changes in aquatic communities in the Panama Canal. The DNA barcodes presented here are all from captured specimens, which confirms their presence in Panama and, in many cases, inside the Panama Canal. Both native and introduced taxa are included. This dataset represents a valuable resource for environmental DNA (eDNA) work in the Panama Canal region and across the Neotropics aimed at monitoring ecosystem health, tracking non-native and potentially invasive species, and understanding the ecology and distribution of these freshwater and euryhaline taxa. Full article
(This article belongs to the Special Issue Benchmarking Datasets in Bioinformatics, 2nd Edition)
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11 pages, 979 KiB  
Article
Gastrointestinal Helminths of Suliformes Birds from the Southern Coast of São Paulo, Brazil
by Beatriz Brener, Guilherme Sena, Magda Antonello, Júlia Piolla, Michelle Fonseca and Marcelo Knoff
Parasitologia 2025, 5(3), 32; https://doi.org/10.3390/parasitologia5030032 - 2 Jul 2025
Viewed by 216
Abstract
Seabirds of the families Fregatidae, Phalacrocoracidae and Sulidae, common on the southeastern coast of Brazil, form colonies and play a bioindicator role in coastal ecosystems due to their ecological habits. This study aimed to identify the prevalence of parasitic helminths in Suliformes birds, [...] Read more.
Seabirds of the families Fregatidae, Phalacrocoracidae and Sulidae, common on the southeastern coast of Brazil, form colonies and play a bioindicator role in coastal ecosystems due to their ecological habits. This study aimed to identify the prevalence of parasitic helminths in Suliformes birds, of the species Fregata magnificens Mathews, 1914, Sula leucogaster Boddaert, 1783 and Nannopterum um Gmelin, 1789, from the Instituto de Pesquisas Cananeia (IPeC) on the southern coast of the State of São Paulo, and to record the diversity and parasitic indices, since reports of helminth prevalence in pelagic birds are scarce in Brazil. From 2018 to 2020, a total of 270 nematode specimens and 271 acanthocephalan parasites were collected from 51 Suliformes birds (20 F. magnificens, 10 N. brasilianum and 21 S. leucogaster). The host species F. magnificens was parasitized by Contracaecum plagiaticium and Contracaecum pelagicum. The host S. leucogaster was parasitized by C. plagiaticium. In the host N. brasilianum, specimens of Contracaecum australe, Contracaecum rudolphii, Contracaecum multipapillatum, Syncuaria squamata and Andracantha tandemtesticulata were found. This is the first report of C. plagiaticium and C. pelagicum in F. magnificens in Brazilian territory, and of A. tandemtesticulata in N. brasilianum in the southeast region of Brazil. Full article
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