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Search Results (479)

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Keywords = sowing quality

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19 pages, 7212 KiB  
Review
Phacelia tanacetifolia Benth. as a Multifunctional Plant: Support for Pollinators and Sustainable Agricultural Practices
by Piotr Jarosław Żarczyński, Ewa Mackiewicz-Walec, Sławomir Józef Krzebietke, Stanisław Sienkiewicz and Katarzyna Żarczyńska
Agronomy 2025, 15(8), 1843; https://doi.org/10.3390/agronomy15081843 - 30 Jul 2025
Viewed by 132
Abstract
Phacelia tanacetifolia Benth. is a species of annual plant that has been gaining importance in recent years. Initially, it was treated as an ornamental plant and valuable only to bees. Over the years, this species has become more widely known, and many more [...] Read more.
Phacelia tanacetifolia Benth. is a species of annual plant that has been gaining importance in recent years. Initially, it was treated as an ornamental plant and valuable only to bees. Over the years, this species has become more widely known, and many more of its advantages have been discovered. The aim of this study was to learn about the contemporary economic importance of Phacelia tanacetifolia Benth. The extraordinary, rapid increase in the plant’s biomass means that it is valued as a fodder plant and at the same time is included in the group of leaders among catch crops. It is characterized by low requirements for soil quality. The main advantage of this plant is its high resistance to drought and frost. A great advantage of this plant is its high drought resistance. It is recommended for sowing both in monoculture and in mixtures with other species. In the light of current standards and assumptions, it fits perfectly into the framework of sustainable development. It is a valuable link in the biodiversity chain, as well as support for a number of ecosystem services such as CO2 sequestration, retention of nutrients in the soil or protection of its structure. Phacelia is seen as having great potential as a plant that provides food for a number of pollinators. The latest research also focuses on assessing the possibility of using it for energy purposes (biogas). Efforts are being made to introduce phacelia on a wider scale to eliminate crop monocultures and significantly strengthen biodiversity in a given area. Phacelia plays an important role in various agronomic systems and effectively supports the protection of the natural environment. The contribution of this species to the development of ecosystem services to date is undeniable. It should be assumed that this plant will continue to significantly support a number of activities for sustainable development. Full article
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22 pages, 1513 KiB  
Article
Forage Yield, Quality, and Weed Suppression in Narbon Vetch (Vicia narbonensis L.) and Italian Ryegrass (Lolium multiflorum L.) Mixtures Under Organic Management
by Melek Demircan, Emine Serap Kizil Aydemir and Koray Kaçan
Agronomy 2025, 15(8), 1796; https://doi.org/10.3390/agronomy15081796 - 25 Jul 2025
Viewed by 181
Abstract
This study aimed to evaluate the forage yield, quality, and weed suppression potential of narbon vetch (Vicia narbonensis L.) and Italian ryegrass (Lolium multiflorum L.) grown as sole crops and in mixtures under organic farming conditions in Bilecik, Turkey, during the [...] Read more.
This study aimed to evaluate the forage yield, quality, and weed suppression potential of narbon vetch (Vicia narbonensis L.) and Italian ryegrass (Lolium multiflorum L.) grown as sole crops and in mixtures under organic farming conditions in Bilecik, Turkey, during the 2020–2021 growing season. The experiment included 15 treatments comprising monocultures and mixed sowing at different ratios. Measurements included morphological traits, forage yield components (green herbage, hay, and crude protein), fiber content, botanical composition, and weed biomass. The results reveal significant differences among treatments in terms of growth parameters and forage performance. Monocultures of IFVN 567 and Bartigra showed the highest green and hay yields, while mixtures such as IFVN 567 + Trinova and IFVN 567 + Bartigra outperformed in terms of land equivalent ratio (LER) and protein yield, demonstrating a clear advantage in land use efficiency. Furthermore, these mixtures showed superior weed suppression compared to monocultures. Overall, the findings suggest that carefully selected vetch–ryegrass combinations can enhance forage productivity, nutritional quality, and weed management under organic systems. Full article
(This article belongs to the Section Grassland and Pasture Science)
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22 pages, 658 KiB  
Article
Integrating Cultivation Practices and Post-Emergence Herbicides for ALS-Resistant False Cleavers (Galium spurium L.) Management in Durum Wheat
by Panagiotis Sparangis, Aspasia Efthimiadou, Nikolaos Katsenios, Kyriakos D. Giannoulis and Anestis Karkanis
Agronomy 2025, 15(8), 1786; https://doi.org/10.3390/agronomy15081786 - 24 Jul 2025
Viewed by 489
Abstract
False cleavers (Galium spurium L.) is a broadleaf weed species that affects wheat productivity because of its strong competition for resources. It has developed resistance to acetolactate synthase (ALS) inhibitors, such as sulfonylureas and triazolopyrimidines, which are herbicides widely used in durum [...] Read more.
False cleavers (Galium spurium L.) is a broadleaf weed species that affects wheat productivity because of its strong competition for resources. It has developed resistance to acetolactate synthase (ALS) inhibitors, such as sulfonylureas and triazolopyrimidines, which are herbicides widely used in durum wheat. Integrated weed management programs can contribute to the control of this species and delay the evolution of herbicide resistance. Thus, a two-year field experiment was conducted to evaluate the effects of sowing time, variety, and herbicides on crop yield, density, and dry weight of a false cleavers population with resistance to ALS inhibitors. In both growing seasons, a split-split-plot design was used with three replicates. The sowing date was chosen as the main plot factor, durum wheat varieties as the subplot factor, and herbicides as the sub-subplot factor. The herbicide treatments were: (1) metsulfuron-methyl/bensulfuron-methyl (4/50 g a.i. ha−1), (2) aminopyralid/florasulam (9.9/4.95 g a.i. ha−1), (3) pyroxsulam and florasulam/2,4-D (18.75 + 4.725/225 g a.i. ha−1), (4) 2,4-D/bromoxynil (633.15/601.2 g a.i. ha−1), non-treated control, and hand-weeded control for the first season, while in the second season one more herbicide treatment (halauxifen-methyl/florasulam, 5.6/5.15 g a.i. ha−1) was added. Herbicide application was performed on 10 March 2021 and 28 March 2022, when the crop was at the end of tillering and the beginning of stem elongation. The results showed that the density of false cleavers was not affected by the variety or sowing time. However, its dry weight was 17.3–23.4% higher in early sowing (16 November in 2020 and 8 November 2021) than in late sowing (24 December 2020 and 2 December 2021). Among the herbicides tested, 2,4-D/bromoxynil and halauxifen-methyl/florasulam effectively controlled false cleavers, showing greater efficacy in late sowing (>88%), which ultimately led to a higher yield. In conclusion, our two-year findings demonstrate that delayed sowing as part of an integrated weed management strategy can contribute to controlling resistant populations of false cleavers to ALS-inhibiting herbicides without affecting the quantity and quality of durum wheat yield in areas with a Mediterranean climate. Full article
(This article belongs to the Special Issue Weed Biology and Ecology: Importance to Integrated Weed Management)
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13 pages, 272 KiB  
Article
Genetic Variability of Loci Affecting Meat Quality and Production in Nero Siciliano Pig Breed
by Serena Tumino, Morena Carlentini, Giorgio Chessari, Andrea Criscione, Aurora Antoci, Donata Marletta and Salvatore Bordonaro
Animals 2025, 15(14), 2143; https://doi.org/10.3390/ani15142143 - 19 Jul 2025
Viewed by 240
Abstract
Nero Siciliano (NS) is an autochthonous pig breed reared in northeastern Sicily; despite its high-quality meat products, NS is currently endangered. This study aimed to evaluate the genetic variability at nine loci within candidate genes for meat traits—Melanocortin 4 Receptor (MC4R), [...] Read more.
Nero Siciliano (NS) is an autochthonous pig breed reared in northeastern Sicily; despite its high-quality meat products, NS is currently endangered. This study aimed to evaluate the genetic variability at nine loci within candidate genes for meat traits—Melanocortin 4 Receptor (MC4R), Ryanodine Receptor 1 (RYR1), Class 3 Phosphoinositide 3-Kinase (PIK3C3) and Leptin (LEP)—to provide useful information for preservation and exploitation of the NS pig breed. Distribution of the genetic variants was assessed in a representative sample of 87 pigs (18 boars and 69 sows) collected in nine farms located in the original breeding area. Genotypes have been determined using PCR-RFLP and Sanger sequencing. Alleles linked to different growth rates and back fat deposition showed high frequencies (MC4R c.175C—0.93; LEP g.3469T—0.91) in the whole sample. Deviations from Hardy–Weinberg equilibrium and different allele distribution in boars and sows were observed. The RYR1 g.1843T allele, associated with Malignant Hyperthermia and Pale Soft Exudative meat defect, was reported in seven heterozygote pigs (q = 0.04) with one farm exhibiting a frequency of 0.29. Our results suggest the need for continuous monitoring of the genetic variants in NS both to maintain high meat quality and eradicate the RYR1 g.1843T allele. Full article
(This article belongs to the Special Issue Impact of Genetics and Feeding on Growth Performance of Pigs)
16 pages, 2035 KiB  
Article
Optimizing Sunflower Cultivar Selection Under Climate Variability: Evidence from Coupled Meteorological-Growth Modeling in Arid Northwest China
by Jianguo Mu, Jianqin Wang, Ruiying Ma, Zengshuai Lv, Hongye Dong, Yantao Liu, Wei Duan, Shengli Liu, Peng Wang and Xuekun Zhang
Agronomy 2025, 15(7), 1724; https://doi.org/10.3390/agronomy15071724 - 17 Jul 2025
Viewed by 292
Abstract
Under the scenario of global climate warming, meteorological risks affecting sunflower cultivation in Xinjiang’s 10th Division were investigated by developing a meteorological-growth coupling model. Field experiments were conducted at three representative stations (A1–A3) during 2023–2024 to assess temperature and precipitation impacts on yield [...] Read more.
Under the scenario of global climate warming, meteorological risks affecting sunflower cultivation in Xinjiang’s 10th Division were investigated by developing a meteorological-growth coupling model. Field experiments were conducted at three representative stations (A1–A3) during 2023–2024 to assess temperature and precipitation impacts on yield and quality traits among sunflower cultivars with varying maturation periods. The main findings were: (1) Early-maturing cultivar B1 (RH3146) exhibited superior adaptation at low-temperature station A1, achieving 12% higher plant height and an 18% yield increase compared to regional averages. (2) At thermally variable station A2 (daily average temperature fluctuation ± 8 °C, precipitation CV = 25%), the late-maturing cultivar B3 showed enhanced stress resilience, achieving 35.6% grain crude fat content (15% greater than mid-maturing B2) along with 8–10% increases in seed setting rate and 100-grain weight. These improvements were potentially due to optimized photoassimilated allocation and activation of stress-responsive genes. (3) At station A3, characterized by high thermal-humidity variability (CV > 15%) during grain filling, B3 experienced a 15-day delay in maturation and a 3% reduction in ripeness. Two principal mitigation strategies are recommended: preferential selection of early-to-mid maturing cultivars in regions with thermal-humidity CV > 10%, improving yield stability by 23%, and optimization of sowing schedules based on accumulated temperature-precipitation modeling, reducing meteorological losses by 15%. These evidence-based recommendations provide critical insights for climate-resilient cultivar selection and precision agricultural management in meteorologically vulnerable agroecosystems. Full article
(This article belongs to the Section Agroecology Innovation: Achieving System Resilience)
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13 pages, 2237 KiB  
Article
Intercropping of Cereals with Lentil: A New Strategy for Producing High-Quality Animal and Human Food
by Theodoros Gkalitsas, Fokion Papathanasiou and Theano Lazaridou
Agronomy 2025, 15(7), 1658; https://doi.org/10.3390/agronomy15071658 - 8 Jul 2025
Viewed by 936
Abstract
Intercropping is an eco-friendly agricultural practice that can lead to increased productivity and improved resource efficiency. This two-year field study (2022–2023 and 2023–2024) aimed to evaluate the yield and quality (protein content) of lentil when intercropping with bread wheat (Yekora) and oat (Kassandra) [...] Read more.
Intercropping is an eco-friendly agricultural practice that can lead to increased productivity and improved resource efficiency. This two-year field study (2022–2023 and 2023–2024) aimed to evaluate the yield and quality (protein content) of lentil when intercropping with bread wheat (Yekora) and oat (Kassandra) under two spatial arrangements (1:1 alternate rows and mixed rows at a 50:50 seeding ratio) in northwestern Greece. A completely randomized design was applied with three replications. Differences were found between treatments regarding yield as well as protein content. Results showed that the highest total grain yield (2478.6 kg/ha) and land equivalent ratio (LER = 2.50) were recorded in the Yekora + Thessalia combination (alternate rows). Legume protein content remained consistently high (27–31%), while cereal protein content varied with genotype. Intercropping in alternate rows generally outperformed mixed sowing, indicating the importance of spatial arrangement in optimizing resource use. These findings suggest that properly designed cereal–lentil intercropping systems can enhance yield and quality while supporting sustainable agricultural practices. Intercropping of Yekora with lentil was superior compared to lentil and bread wheat monocultures and can be recommended as an alternative method for the production of human and animal food. Full article
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13 pages, 3586 KiB  
Article
Effects of Different Types of Pot-Mat Trays on the Growth of Densely Sown Seedlings and Root Morphology of Machine-Transplanted Rice
by Yuhang Shang, Peng Zhang, Xinling Ma, Xiang Wu, Yulin Chen, Huizhe Chen, Yuping Zhang, Jing Xiang, Yaliang Wang, Zhigang Wang, Yiwen Xu, Xuzhu Zhang and Yikai Zhang
Agronomy 2025, 15(7), 1616; https://doi.org/10.3390/agronomy15071616 - 2 Jul 2025
Viewed by 311
Abstract
Weak seedlings and poor growth uniformity affect the mechanical transplanting of densely sown rice seedlings. To address these issues, seedlings of the conventional japonica rice “Zhehexiang 2” were grown in a traditional flat tray (control), pot-mat tray (26 × 52 bowls; BT(26)), and [...] Read more.
Weak seedlings and poor growth uniformity affect the mechanical transplanting of densely sown rice seedlings. To address these issues, seedlings of the conventional japonica rice “Zhehexiang 2” were grown in a traditional flat tray (control), pot-mat tray (26 × 52 bowls; BT(26)), and pot-mat tray (30 × 58 bowls; BT(30)) to compare the effects of different specifications of pot-mat trays (BTs) on the growth and quality of mechanical transplanting of densely sown rice seedlings with 250 g/tray. The BT-raised seedlings showed improved seedling quality, with increases in the shoot and root dry weights by 7.44% and 20.11%, respectively, compared to the flat tray. Under the dense sowing rate, the plant height uniformity of the BT(26) and BT(30) treatments was significantly increased by 6.95% and 3.43%, and the root entwining force of the seedlings was 14.28% and 10.21% higher, respectively, compared with those of the control. The missing hill rate for BT-raised seedlings after mechanical transplanting was significantly reduced by 53.15%. The loss of roots during mechanical transplanting was reduced. Compared with the control, the root length, root surface area, and root number were increased, and a greater number of large roots were retained, which promoted the early development of seedlings after mechanical transplanting. The proportion of holes with two to five seedlings was higher after mechanical transplanting. The pot-mat tray divided the root growth area of seedlings, promoted the growth of the seedlings, and reduced the root loss and missing hill rate under the high sowing rate. Thus, the quality of mechanical transplanting of densely sown seedlings was improved. Full article
(This article belongs to the Special Issue Rice Cultivation and Physiology)
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18 pages, 3095 KiB  
Article
A Transcriptomics Approach to Unveil the Antioxidant Effects of Tryptophan on Oocyte Quality Under Oxidative Stress in Pigs
by Zhekun Zhu, Yanlong Li, Xinyin Fan, Shuang Cai, Siyu Li, Yutian Wang, Xinyu Wang and Fengjuan Yang
Biomolecules 2025, 15(7), 949; https://doi.org/10.3390/biom15070949 - 30 Jun 2025
Viewed by 281
Abstract
This study investigates the effect of tryptophan treatment on aged pig oocytes, focusing on its potential to reduce oxidative stress and improve oocyte quality. An oxidative stress model was induced using hydrogen peroxide (H2O2) to mimic aging effects on [...] Read more.
This study investigates the effect of tryptophan treatment on aged pig oocytes, focusing on its potential to reduce oxidative stress and improve oocyte quality. An oxidative stress model was induced using hydrogen peroxide (H2O2) to mimic aging effects on oocytes. Fresh ovaries from young sows were collected, and oocytes were aspirated and cultured for in vitro maturation. Oocytes in the H2O2 and the H2O2+Trp groups were exposed to 100 µM H2O2 for 30 min, with the H2O2+Trp group receiving an additional 50 µM tryptophan supplementation. RNA-sequencing was performed to study the underlying mechanism through which tryptophan mitigated the H2O2-induced oxidative stress in oocytes. The results demonstrated that tryptophan supplementation significantly reduced oxidative stress markers such as H2O2 and malonaldehyde (MDA) while restoring key antioxidant enzymes such as superoxide dismutase (SOD), and catalase (CAT) confirming its antioxidant role. Furthermore, tryptophan improved cumulus cell expansion, and oocyte quality, which were compromised by oxidative stress. Transcriptomics study revealed the enrichment of several KEGG pathways, such as P13K-Akt signaling pathways as a critical regulator of cell survival and function, emphasizing the protective effects of tryptophan on oocyte integrity. Moreover, the protein–protein interaction (PPI) network identified several hub genes in the tryptophan-treated group compared with H2O2, including TIMP1, CCN2, and MMP12 as key players in ECM remodeling and cellular adhesion, which are critical for restoring oocyte quality. These findings suggest that tryptophan supplementation not only mitigated oxidative stress but also modulated gene expression related to cellular functions and stress response. These results propose that tryptophan could be a valuable therapeutic strategy for improving reproductive outcomes in aging sows and other mammals facing age-related oocyte dysfunction. Full article
(This article belongs to the Special Issue Placental-Related Disorders of Pregnancy: 2nd Edition)
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23 pages, 3413 KiB  
Article
Short-Term Effects of Mustard (Sinapis alba L.) Cover Crop on Soil Quality in a Maize Production System
by Silvia Quintana-Esteras, Clara Martí, Oriol Ortiz and David Badía
Sustainability 2025, 17(13), 5949; https://doi.org/10.3390/su17135949 - 28 Jun 2025
Viewed by 395
Abstract
Soil health is vital for food security and ecosystem services supporting climate change mitigation. Cover crops (CCs) improve soil quality and crop yields in intensive agriculture. This study assessed the impact of Sinapis alba L. as a CC on ten physical, chemical, and [...] Read more.
Soil health is vital for food security and ecosystem services supporting climate change mitigation. Cover crops (CCs) improve soil quality and crop yields in intensive agriculture. This study assessed the impact of Sinapis alba L. as a CC on ten physical, chemical, and biological soil indicators before maize planting. Three management systems were compared: (i) CC with conventional tillage (CT), (ii) CC under no tillage (NT), and (iii) tilled fallow without CC (TF). Measurements were taken at 60 and 90 days after sowing (DAS) at 0–6 and 0–20 cm depths. The Soil Quality Index (SQI) was higher at the surface under NT (0.69 at 60 DAS; 0.65 at 90 DAS). At 0–20 cm, SQI values increased at 90 DAS but did not differ among treatments. TF also showed improvements (up to +18% at 0–20 cm). Dissolved organic matter increased significantly (1.7–2.5 times), especially under NT and CT. NT enhanced structural stability (+70%) and reduced bulk density (−47%). All glomalin fractions decreased at 90 DAS; however, NT retained higher concentrations of recalcitrant glomalin in the 0–6 cm layer compared to the other treatments. These findings highlight S. alba under no tillage as a promising strategy to improve soil quality, though long-term studies are needed. Full article
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17 pages, 4926 KiB  
Article
Grade Indicators and Distribution Characteristics of Heat Damage to Summer Maize in the Huang–Huai–Hai Plain
by Qing Li, Peijuan Wang, Xin Li, Junxian Tang, Yang Li, Yuanda Zhang and Yuping Ma
Agronomy 2025, 15(7), 1545; https://doi.org/10.3390/agronomy15071545 - 25 Jun 2025
Viewed by 389
Abstract
Heat damage is a major abiotic stress that affects maize yield and quality. Although the differential impacts of heat damage during various growth stages have been widely documented, the grade levels of heat damage at different growth stages remain insufficiently quantified. In this [...] Read more.
Heat damage is a major abiotic stress that affects maize yield and quality. Although the differential impacts of heat damage during various growth stages have been widely documented, the grade levels of heat damage at different growth stages remain insufficiently quantified. In this study, based on daily maximum temperature data and historical disaster records of heat damage from 1980 to 2023, we quantified the grade indicators for heat damage at different growth stages, using disaster inversion and the K-means clustering method. The results identified that the duration thresholds of mild, moderate, and severe heat damage at different growth stages of summer maize are 3–5 days, 6–8 days, and more than 8 days, respectively. Further analysis revealed that the total station ratio of heat damage of summer maize showed a fluctuating upward trend from 1980 to 2023, and the station ratio at different growth stages reached the highest value in 1988, 2002, 2019, 2022, 2013, and 1999, respectively. Additionally, mild heat damage during sowing to maturity stages was found to be more widely distributed spatially and mainly exhibited a slight increasing trend. This study can provide support for enhancing disaster prevention and mitigation capabilities against different levels of heat damage. Full article
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17 pages, 3826 KiB  
Article
Influence of Seed Coat Integrity on the Response of Pepper Seeds to Dielectric Barrier Discharge Plasma Treatment
by Chanyanuch Sriruksa, Choncharoen Sawangrat, Sakon Sansongsiri, Dheerawan Boonyawan and Sa-nguansak Thanapornpoonpong
Plants 2025, 14(13), 1938; https://doi.org/10.3390/plants14131938 - 24 Jun 2025
Viewed by 566
Abstract
This study investigated the response of pepper seeds with varying seed coat conditions (SCs) to dielectric barrier discharge plasma treatment (PT). The experimental design was a split plot with three replications. The primary plot factor was the SC (normal seeds [NMS], nicking at [...] Read more.
This study investigated the response of pepper seeds with varying seed coat conditions (SCs) to dielectric barrier discharge plasma treatment (PT). The experimental design was a split plot with three replications. The primary plot factor was the SC (normal seeds [NMS], nicking at the hilum part [NHP], and removed seed coat [RSC]), while the subplot factor was the plasma exposure time (0.4–2.0 s/cm), including a control, to determine the effects on seed viability, germination, and vigor. The results indicate that NMS seeds exhibit the highest performance in terms of seed viability. The NMS and NHP had statistically significantly higher seed germination, electrical conductivity, radical emergence, and germination index at 14 days after sowing, and the shoot length measured longer than RSC. Plasma exposure at 1.2 s/cm improved germination and vigor, whereas 2.0 s/cm exposure significantly decreased seed viability and increased the number of abnormal seedlings. The interaction between SC and PT significantly affected seedling abnormalities, with RSC seeds being more vulnerable to damage under prolonged exposure. These findings highlight the crucial role of seed coat integrity in maintaining seed quality and suggest that carefully controlled PT can be a promising and sustainable method to enhance pepper seed performance. Full article
(This article belongs to the Section Plant Response to Abiotic Stress and Climate Change)
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14 pages, 940 KiB  
Article
The Influence of Genotype and Seasonality on the Sow Colostrum Quality and Immunoglobulin G Content
by Kristina Gvozdanović, Vice Čuljak, Vladimir Margeta, Ivona Djurkin Kušec, Boris Antunović, Dalida Galović and Goran Kušec
Animals 2025, 15(12), 1802; https://doi.org/10.3390/ani15121802 - 18 Jun 2025
Viewed by 393
Abstract
The aim of this study was to investigate the influence of genotype (GT) and seasonality (NP) on the quality parameters of sow colostrum and evaluate the efficiency of the radial immunodiffusion (RID) analysis and the Brix refractometer in determining the IgG concentration. This [...] Read more.
The aim of this study was to investigate the influence of genotype (GT) and seasonality (NP) on the quality parameters of sow colostrum and evaluate the efficiency of the radial immunodiffusion (RID) analysis and the Brix refractometer in determining the IgG concentration. This study was conducted on 240 sows that originated from two genotypes, namely GT1 (TOPIGS, n = 120) and GT2 (Pig Improvement Company, n = 120), during the three farrowing periods: the winter farrowing period (WNP, n = 80), the summer farrowing period (SMP, n = 80) and the spring farrowing period (SSP, n = 80). The significant interaction effect was observed for protein (p < 0.0001), lactose (p < 0.05) and non-fat solids (SNT) (p < 0.001). At the same time, the interaction effect influenced the IgG concentration measured with the Brix refractometer (p < 0.0001) and RID (p < 0.0001). Pearson’s correlation coefficient showed that Brix percentage was positively correlated with RID results (r = 0.52, p < 0.0001), while the Bland–Altman plots indicated a mean bias of −1.93. Partial eta-squared analysis (η2) showed that the genotype explained the largest proportion of variance in fat content (η2 = 0.136) and IgG concentration (η2 = 0.164), while interaction effects were largest for protein (η2 = 0.072). The results of this study show that genotype and seasonality influence sow colostrum quality, which indicates the importance of genotype−seasonality interactions in breeding programs for optimizing the colostrum quality and piglet survival. Full article
(This article belongs to the Special Issue Genetic Research for Improving Livestock Heat Stress Resistance)
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16 pages, 1616 KiB  
Article
Genome Selection and Genome-Wide Association Analyses for Litter Size Traits in Large White Pigs
by Yifeng Hong, Xiaoyan He, Dan Wu, Jian Ye, Yuxing Zhang, Zhenfang Wu and Cheng Tan
Animals 2025, 15(12), 1724; https://doi.org/10.3390/ani15121724 - 11 Jun 2025
Viewed by 1117
Abstract
(1) Background: Litter size traits are critical for pig breeding efficiency but pose challenges due to low heritability and sex-limited influences. This study aimed to elucidate the genetic architecture and identify candidate genes for these traits in Large White pigs using genomic selection [...] Read more.
(1) Background: Litter size traits are critical for pig breeding efficiency but pose challenges due to low heritability and sex-limited influences. This study aimed to elucidate the genetic architecture and identify candidate genes for these traits in Large White pigs using genomic selection (GS) and genome-wide association analyses (GWAS). (2) Methods: This study utilized phenotypic data from nine litter size traits in Large White sows. Genotyping-by-sequencing (GBS) was performed to obtain genotype data, retaining 153,782 high-quality SNPs after quality control. Genetic evaluation was conducted using single-step genomic best linear unbiased prediction (ssGBLUP), with genetic parameters (heritability and genetic correlations) estimated via an animal model (repeatability model). To assess prediction accuracy, 10-fold cross-validation was employed to compare traditional BLUP with ssGBLUP. Furthermore, a single-step genome-wide association study (ssGWAS) integrated genomic information and pedigree-based relationship matrices to screen for significant SNPs associated with litter size traits across the genome. Functional analysis of key candidate genes was subsequently conducted based on ssGWAS results. (3) Results: Heritabilities for litter traits ranged from 0.01 to 0.06. ssGBLUP improved genomic prediction accuracy by 6.38–13.33% over BLUP. Six genomic windows explaining 1.07–1.77% of genetic variance were identified via ssGWAS, highlighting GPR12 on SSC11 as a key candidate gene linked to oocyte development. (4) Conclusions: This study demonstrates the efficacy of ssGBLUP for low-heritability traits and identifies GPR12 as a pivotal gene for litter size. Prioritizing NHB and LBWT in breeding programs could enhance genetic gains while mitigating adverse effects on piglet health. These findings advance genomic strategies for improving reproductive efficiency in swine. Full article
(This article belongs to the Section Animal Genetics and Genomics)
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25 pages, 1529 KiB  
Review
From Nutrition to Energy: Evaluating the Role of Rye (Secale cereale L.) Grain in Sustainable Food Systems and Biofuel Applications
by Adam Kleofas Berbeć and Marta Wyzińska
Foods 2025, 14(11), 1971; https://doi.org/10.3390/foods14111971 - 1 Jun 2025
Cited by 1 | Viewed by 661
Abstract
Rye (Secale cereale L.), a cereal with valuable agronomic and nutritional benefits, contributes to sustainable agriculture, especially in areas where more demanding crops cannot be cultivated due to the poor agronomic value of soil. This review explores rye grain quality optimization strategies [...] Read more.
Rye (Secale cereale L.), a cereal with valuable agronomic and nutritional benefits, contributes to sustainable agriculture, especially in areas where more demanding crops cannot be cultivated due to the poor agronomic value of soil. This review explores rye grain quality optimization strategies through production techniques. The quality and yield of grain are under the significant impact of agronomic factors, such as variety selection, crop rotation, soil tillage, fertilization, sowing practices, chemical protection, and harvest timing. It is also under the strong influence of the chosen farm’s management strategy, like organic or conventional farming system. This review emphasizes its diverse potential utilization routes, and the importance of bioactive compounds, dietary fibers, phenolic acids, phytoestrogens, and benzoxazinoids that enhance its value as a functional food. Cereal grain with quality issues cannot be used as food for humans, however, it can still be utilized alternatively as a renewable biofuel. This review showed rye grain to have a potential to contribute to sustainable agriculture and at the same time build farms’ resilience through possible alternative utilization strategies. It can serve as both a food source and a sustainable biofuel, offering a dual-purpose solution within the circular bioeconomy. Full article
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20 pages, 4049 KiB  
Article
Biomass Sorghum (Sorghum bicolor) Agronomic Response to Melanaphis sorghi (Hemiptera: Aphididae) Infestation and Silicon Application
by Douglas G. Santos, Leonardo L. C. Dias, Guilherme S. Avellar, Maria Lúcia F. Simeone, Rafael A. C. Parrella, Nathan M. Santos, Thaís F. Silva, Antônio A. Neto and Simone M. Mendes
Insects 2025, 16(6), 566; https://doi.org/10.3390/insects16060566 - 27 May 2025
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Abstract
Silicon application shows potential for enhancing crop resistance to pests while improving productivity. This study evaluated silicon’s effects on agronomic traits and chemical composition of biomass sorghum (Sorghum bicolor) under aphid infestation (Melanaphis sorghi (Theobald, 1904) (Hemiptera: Aphididae)). Greenhouse-grown sorghum [...] Read more.
Silicon application shows potential for enhancing crop resistance to pests while improving productivity. This study evaluated silicon’s effects on agronomic traits and chemical composition of biomass sorghum (Sorghum bicolor) under aphid infestation (Melanaphis sorghi (Theobald, 1904) (Hemiptera: Aphididae)). Greenhouse-grown sorghum (hybrid BRS716) was treated with silicic acid (0, 2, 4, or 6 metric tons per hectare), applied at sowing and the five-leaf stage. Aphid-infested plants were monitored weekly for damage, alongside growth measurements (height, stem diameter, leaf retention). Post-harvest, fresh, and dry biomass were analyzed via near-infrared spectroscopy and chemical assays. Data were assessed using ANOVA and regression models. Results demonstrated that silicon reduced aphid infestation and damage at 6 metric tons per hectare. Silicon also increased cellulose content and improved phosphorus and calcium uptake, though nitrogen and potassium levels decreased. These findings suggest that silicon supplementation can strengthen sorghum’s natural defenses, enhance biomass production, and modify nutrient profiles. This approach offers a sustainable strategy to mitigate aphid damage while maintaining crop yield and quality, with potential applications in integrated pest management systems. Full article
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