Search Results (37)

This study investigates Mg isotopes (δ²⁶Mg) in vent fluids from Milos, Aegean Sea, to evaluate phase separation and secondary mineral formation. The δ²⁶Mg vary significantly in Milos, exceeding 0.66‰, allowing for the classification of the fluids into three sub-groups based on chemical characteristics: seawater-like, cave fluids, and submarine-brines. The seawater-like fluids exhibit large δ²⁶Mg variation, −0.64 to −1.18‰, and mostly follow a Rayleigh fractionation trend, with a fractionation factor α = 1.00020 ± 0.00011. The cave fluids are highly acidic, have low Cl, are vapor-rich, and display heavy δ²⁶Mg compositions (−0.52 to −0.63‰). The submarine-brines are characterized by high Cl, high non-volatile metals, and light δ²⁶Mg (−0.65 to −1.00‰). The latter two fluid types represent vapors and brines, respectively, which underwent phase separation at depth in Milos. These δ²⁶Mg values were combined with major/trace elements, as well as Li and B isotopes, to explore possible controlling mechanisms. We report for the first time a shallow submarine hydrothermal system that has a vapor component enriched in heavy δ²⁶Mg, but with no detectable isotopic changes in the brines. It is evident that δ²⁶Mg in vent fluids is unique for separating effects of water/rock interaction and secondary mineral and phase separation at shallow-water systems. Full article

The shallow-sea hydrothermal vent at Guishan Islet, located off the coast of Taiwan, serves as a remarkable natural site for studying microbial ecology in extreme environments. In April 2019, we investigated the composition of prokaryotic picoplankton communities, their gene expression profiles, and the dissolved inorganic carbon uptake efficiency. Our results revealed that the chemolithotrophs Thiomicrorhabdus spp. contributed to the majority of primary production in the waters affected by the hydrothermal vent plume. The metatranscriptomic analysis aligned with the primary productivity measurements, indicating the significant gene upregulations associated with carboxysome-mediated carbon fixation in Thiomicrorhabdus. Synechococcus and Prochlorococcus served as the prokaryotic photoautotrophs for primary productivity in the waters with lower influence from hydrothermal vent emissions. Thiomicrorhabdus and picocyanobacteria jointly provided organic carbon for sustaining the shallow-sea hydrothermal vent ecosystem. In addition to the carbon fixation, the upregulation of genes involved in the SOX (sulfur-oxidizing) pathway, and the dissimilatory sulfate reduction indicated that energy generation and detoxification co-occurred in Thiomicrorhabdus. This study improved our understanding of the impacts of shallow-sea hydrothermal vents on the operation of marine ecosystems and biogeochemical cycles. Full article

The mixing of hydrothermal vent fluids with deep ocean water and near-vent pelagic matter results in particle populations with a complex composition consisting of hydrothermally derived, rock-forming, and biogenic particles. This study is the first investigation of deep sediment trap material collected at the Jan Mayen hydrothermal vent field area at 71° N and 6° W of the southernmost Mohns Ridge in the Norwegian–Greenland Sea. This area is characterized by high magmatic activity, axial volcanic ridges, and mafic-hosted volcanogenic massive sulfide deposits. Data on sinking particle fluxes from two hydrothermal settings, the Troll Wall and Soria Moria vent fields, located about 4 km apart, are discussed in the article. In particular, the study emphasize the differences between two hydrothermal settings from each other that demonstrate the geodiversity of hydrothermal processes within the relatively shallow Jan Mayen hydrothermal vent field area affected by the Iceland and Jan Mayen hotspots. The fluxes of sinking hydrothermally derived particles (barite, gypsum, non-crystalline Fe-Si oxyhydroxides, and Fe, Zn, and Cu sulfides) obtained at the Jan Mayen hydrothermal vents made it possible to elucidate the characteristic features of their buoyancy plumes and compare them with similar data reported for other submarine hydrothermal systems. In terms of the composition of the deep-sea hydrothermal particles from buoyant plumes, the studied vent fields are most similar to the Menez Gwen and Lucky Strike vent fields affected by the Azores hotspot. The supply of hydrothermally derived matter is accompanied by normal pelagic/hemipelagic sedimentation, which is dominated by biogenic particles, especially in the upper water layers. Full article

Prodigiosin is a red bacterial pigment with great potential as a natural dye and drug precursor, while presenting several pharmacological properties, including antimicrobial and anticancer activities. Its commercialization for biomedical applications, however, remains scarce. The major limitations are related to the lack of efficient bioprocesses and scaling up from laboratory to production. In the present work, the upstream process for prodigiosin production was developed using a marine Serratia rubidaea isolated from a sample collected near a shallow-water hydrothermal vent. The yield of product per biomass was found to be influenced by the cell concentration in the inoculum. The system was scaled up to 2 L stirred tank reactors with two different vessel geometries. It was shown that the vessel geometry and a cascade control mode for regulating the dissolved oxygen concentration influenced the volumetric oxygen mass transfer coefficient (k_La) and thus prodigiosin production. To improve product yields, strategies to mimic the aeration conditions found at the sampling site were tested. When the inoculum was grown for 5 h at 200 rpm and for 19 h at 25 rpm, which significantly decreased the oxygen available, the cells produced 588.2 mg_product/g_biomass, corresponding to a production of 1066.2 mg of prodigiosin in 24 h and a productivity of 36.1 mg_product/(L.h). This is a 3.7-fold increase in prodigiosin yield and a 4.5-fold increase in productivity in relation to when no particular strategy was promoted. Additionally, it was shown that lipid analysis and flow cytometry may be used as reliable at-line analytical tools, allowing the monitoring of cell condition and prodigiosin production during fermentation. Full article

The enormous potential attributed to prodigiosin regarding its applicability as a natural pigment and pharmaceutical agent justifies the development of sound bioprocesses for its production. Using a Serratia rubidaea strain isolated from a shallow-water hydrothermal vent, optimization of the growth medium composition was carried out. After medium development, the bacterium temperature, light and oxygen needs were studied, as was growth inhibition by product concentration. The implemented changes led to a 13-fold increase in prodigiosin production in a shake flask, reaching 19.7 mg/L. The conditions allowing the highest bacterial cell growth and prodigiosin production were also tested with another marine strain: S. marcescens isolated from a tide rock pool was able to produce 15.8 mg/L of prodigiosin. The bioprocess with S. rubidaea was scaled up from 0.1 L shake flasks to 2 L bioreactors using the maintenance of the oxygen mass transfer coefficient (k_La) as the scale-up criterion. The implemented parameters in the bioreactor led to an 8-fold increase in product per biomass yield and to a final concentration of 293.1 mg/L of prodigiosin in 24 h. Full article

The key area of the Arctic Ocean for atmospheric venting of CH₄ is the East Siberian Arctic Shelf (ESAS). Leakage of methane through shallow ESAS waters needs to be considered in interactions between the biogeosphere and a warming Arctic climate. The development of remote sensing techniques for gas seepage detection and mapping is crucially needed for further applications in the ESAS and other areas of interest. Given the extent of the seepage areas and the magnitude of current and potential future emissions, new approaches are required to effectively, rapidly, and quantitatively survey the large seepage areas. Here, we consider the main features of gas seep detection on the sea surface in the characteristics of wind waves and radar signals. The kinematics of wave packets based on the kinetic equation for the spectral density of the wave action of surface waves is described. The results of a full-scale experiment on the remote radar observation of a model gas seep to the sea surface in the radar equipment signals are considered. The characteristic radar signatures of the gas seep in a wide range of hydrometeorological conditions, the parameters of which were recorded synchronously with the radar mapping, were determined. The results of the first radar observations of natural methane seeps on the ESAS are presented, and their radar contrasts are evaluated. The theoretical conclusions are in good qualitative agreement with the results of the model experiment and field studies and can be used for further research in aquatic areas with potential gas seepage, both of natural or anthropogenic origin, such as bubbling release from broken underwater gas pipelines. Full article

Microbial life present in the marine environment has to be able to adapt to rapidly changing and often extreme conditions. This makes these organisms a putative source of commercially interesting compounds since adaptation provides different biochemical routes from those found in their terrestrial counterparts. In this work, the goal was the identification of a marine bacterium isolated from a sample taken at a shallow water hydrothermal vent and of its red product. Genomic, lipidomic, and biochemical approaches were used simultaneously, and the bacterium was identified as Serratia rubidaea. A high-throughput screening strategy was used to assess the best physico-chemical conditions permitting both cell growth and production of the red product. The fatty acid composition of the microbial cells was studied to assess adaptation at the lipid level under stressful conditions, whilst several state-of-the-art techniques, such as DSC, FTIR, NMR, and Ultra-High Resolution Qq-Time-of-Flight mass spectrometry, were used to characterize the structure of the pigment. We hypothesize that the pigment, which could be produced by the cells up to 62 °C, is prodigiosin linked to an aliphatic compound that acts as an anchor to keep it close to the cells in the marine environment. Full article

The snail P. glabra is an endemic species in deep-sea chemosynthetic ecosystems of the Northwest Pacific Ocean. To obtain more genetic information on this species and provide the basis for subsequent whole-genome map construction, a genome survey was performed on this snail from the hydrothermal vent of Okinawa Trough. The genomic size of P. glabra was estimated to be 1.44 Gb, with a heterozygosity of 1.91% and a repeated sequence content of 69.80%. Based on the sequencing data, a draft genome of 1.32 Gb was assembled. Transposal elements (TEs) accounted for 40.17% of the entire genome, with DNA transposons taking the highest proportion. It was found that most TEs were inserted in the genome recently. In the simple sequence repeats, the dinucleotide motif was the most enriched microsatellite type, accounting for 53% of microsatellites. A complete mitochondrial genome of P. glabra with a total length of 16,268 bp was assembled from the sequencing data. After comparison with the published mitochondrial genome of Provanna sp. from a methane seep, 331 potential single nucleotide polymorphism (SNP) sites were identified in protein-coding genes (PCGs). Except for the cox1 gene, nad2, nad4, nad5, and cob genes are expected to be candidate markers for population genetic and phylogenetic studies of P. glabra and other deep-sea snails. Compared with shallow-water species, three mitochondrial genes of deep-sea gastropods exhibited a higher evolutionary rate, indicating strong selection operating on mitochondria of deep-sea species. This study provides insights into the genome characteristics of P. glabra and supplies genomic resources for further studies on the adaptive evolution of the snail in extreme deep-sea chemosynthetic environments. Full article

Laser Doppler velocimetry (LDV) based on a differential laser Doppler system has been widely used in fluid mechanics to measure particle velocity. However, the two outgoing lights must intersect strictly at the measurement position. In cross-interface applications, due to interface effects, two beams of light become easily disjointed. To address the issue, we present a laser velocimeter in a coaxial arrangement consisting of the following components: a single-frequency laser (wavelength λ = 532 nm) and a Twyman–Green interferometer. In contrast to previous LDV systems, a laser velocimeter based on the Twyman–Green interferometer has the advantage of realizing cross-interface measurement. At the same time, the sensitive direction of the instrument can be changed according to the direction of the measured speed. We have developed a 4000 m level laser hydrothermal flow velocity measurement prototype suitable for deep-sea in situ measurement. The system underwent a withstand voltage test at the Qingdao Deep Sea Base, and the signal obtained was normal under a high pressure of 40 MPa. The velocity contrast measurement was carried out at the China Institute of Water Resources and Hydropower Research. The maximum relative error of the measurement was 8.82% when compared with the acoustic Doppler velocimeter at the low-speed range of 0.1–1 m/s. The maximum relative error of the measurement was 1.98% when compared with the nozzle standard velocity system at the high-speed range of 1–7 m/s. Finally, the prototype system was successfully evaluated in the shallow sea in Lingshui, Hainan, with it demonstrating great potential for the in situ measurement of fluid velocity at marine hydrothermal vents. Full article

Current knowledge of the microbial diversity of shallow-water hydrothermal vents is still limited. Recent evidence suggests that these peculiar and heterogeneous systems might host highly diversified microbial assemblages with novel or poorly characterized lineages. In the present work, we used 16S rRNA gene metabarcoding to provide novel insights into the diversity of the bacterial and archaeal assemblages in seawater and sediments of three shallow-water hydrothermal systems of Panarea Island (Tyrrhenian Sea). The three areas were characterized by hot, cold, or intermediate temperatures and related venting activities. Microbial biodiversity in seawater largely differed from the benthic one, both in α-diversity (i.e., richness of amplicon sequence variants—ASVs) and in prokaryotic assemblage composition. Furthermore, at the class level, the pelagic prokaryotic assemblages were very similar among sites, whereas the benthic microbial assemblages differed markedly, reflecting the distinct features of the hydrothermal activities at the three sites we investigated. Our results show that ongoing high-temperature emissions can influence prokaryotic α-diversity at the seafloor, increasing turnover (β-)diversity, and that the intermediate-temperature-venting spot that experienced a violent gas explosion 20 years ago now displays the highest benthic prokaryotic diversity. Overall, our results suggest that hydrothermal vent dynamics around Panarea Island can contribute to an increase in the local heterogeneity of physical–chemical conditions, especially at the seafloor, in turn boosting the overall microbial (γ-)diversity of this peculiar hydrothermal system. Full article

Varunaivibrio sulfuroxidans type strain TC8^T is a mesophilic, facultatively anaerobic, facultatively chemolithoautotrophic alphaproteobacterium isolated from a sulfidic shallow-water marine gas vent located at Tor Caldara, Tyrrhenian Sea, Italy. V. sulfuroxidans belongs to the family Thalassospiraceae within the Alphaproteobacteria, with Magnetovibrio blakemorei as its closest relative. The genome of V. sulfuroxidans encodes the genes involved in sulfur, thiosulfate and sulfide oxidation, as well as nitrate and oxygen respiration. The genome encodes the genes involved in carbon fixation via the Calvin–Benson–Bassham cycle, in addition to genes involved in glycolysis and the TCA cycle, indicating a mixotrophic lifestyle. Genes involved in the detoxification of mercury and arsenate are also present. The genome also encodes a complete flagellar complex, one intact prophage and one CRISPR, as well as a putative DNA uptake mechanism mediated by the type IVc (aka Tad pilus) secretion system. Overall, the genome of Varunaivibrio sulfuroxidans highlights the organism’s metabolic versatility, a characteristic that makes this strain well-adapted to the dynamic environmental conditions of sulfidic gas vents. Full article

The Echus-Kasei region on Mars has been exposed to different episodic volcanic, fluvial, and glacial events in Amazonian time. The goal of the present work is to demonstrate the usefulness of radar instruments to find preserved late Amazonian subsurface structures that may have been encapsulated underneath recent lava flows on Mars. We have analysed 27 radar observations of the SHAllow RADar (SHARAD) instrument on board the Mars Reconnaissance Orbiter (MRO), over the region of Echus Chasma. We discovered the presence of subsurface reflectors in five consecutive SHARAD radargrams at a depth from 35 to 79 m beneath the structure of a lava fan that formed about 59 ± 4 Ma ago. Some vents are preserved above the surface of this lava flow, which stands at a height of 80 m above the surrounding surface. A few kilometres to the north, we find other subsurface reflectors at a depth of about 30 m and a long pit chain formed by the collapse of a lava tube. These kinds of subsurface late Amazonian structures are of interest for astrobiology because they date from the last period when the planet still experienced intense volcanic activity over regions that were previously extensively covered by water. Full article

It is claimed that oceanic hydrothermal vents (HVs), particularly the shallow water ones, offer particular advantages to better understand the effects of future climate and other global change on oceanic biota. Marine hydrothermal vents (HVs) are extreme oceanic environments that are similar to projected climate changes of the earth system ocean (e.g., changes of circulation patterns, elevated temperature, low pH, increased turbidity, increased bioavailability of toxic compounds. Studies on hydrothermal vent organisms may fill knowledge gaps of environmental and evolutionary adaptations to this extreme oceanic environment. In the present contribution we evaluate whether hydrothermal vents can be used as natural laboratories for a better understanding of zooplankton ecology under a global change scenario. Full article

Connectivity in deep-sea organisms must be considered across both depth gradient and horizontal geographical scales. The depth-differentiation hypothesis suggests that strong environmental gradients (e.g., light, temperature, pressure) and habitat heterogeneity in the deep-sea can create selection pressure, and this can result in genetic population divergence. The hydrothermal vent crab Xenograpsus testudinatus (Xenograpsidae) is common in vents at Kueishan Island, Taiwan, ranging from 10 to about 300 m depths. Xenograpsus testudinatus has also been found in shallow water vents (3–20 m) at Kagoshima and the Izu archipelago of Japan. We examine the sequence divergences in the mitochondrial COI, 16S rRNA and D-loop genes, to test the hypothesis that there is significant genetic differentiation among populations of X. testudinatus along the depth gradient at Kueishan Island (30, 200, 209–224 and 250–275 m), and among different geographical regions (Kueishan, Kagoshima and the Izu archipelago) in the West Pacific. There is neither significant population differentiation among shallow or deep-sea vents, nor between geographical locations. Vertical migration of zoea, upwelling on the eastern coast of Taiwan and the strong effect of the Kuroshio Currents has probably resulted in a high level of planktonic larval dispersal of X. testudinatus along the depth and geographical gradients in the Western Pacific. Full article

Environmental contamination by heavy metals (HMs) poses several indirect risks to human health, including the co-spreading of genetic traits conferring resistance to both HMs and antibiotics among micro-organisms. Microbial antibiotic resistance (AR) acquisition is enhanced at sites anthropogenically polluted by HMs, as well as in remote systems naturally enriched in HMs, such as hydrothermal vents in the deep sea. However, to date, the possible role of hydrothermal vents at shallower water depths as hot spots of microbial AR gain and spreading has not been tested, despite the higher potential risks associated with the closer vicinity of such ecosystems to coasts and human activities. In this work, we collected waters and sediments at the Panarea shallow-water hydrothermal vents, testing the presence of culturable marine bacteria and their sensitivity to antibiotics and HMs. All of the bacterial isolates showed resistance to at least one antibiotic and one HM and, most notably, 80% of them displayed multi-AR on average to 12 (min 8, max 15) different antibiotics, as well as multi-HM tolerance. We show that our isolates displayed high similarity (≥99%) to common marine bacteria, affiliating with Actinobacteria, Gammaproteobacteria, Alphaproteobacteria and Firmicutes, and all displayed wide growth ranges for temperature and salinity during in vitro physiological tests. Notably, the analysis of the genomes available in public databases for their closest relatives highlighted the lack of genes for AR, posing new questions on the origin of multi-AR acquisition in this peculiar HM-rich environment. Overall, our results point out that shallow-water hydrothermal vents may contribute to enhance AR acquisition and spreading among common marine bacteria in coastal areas, highlighting this as a focus for future research. Full article