Search Results (4,812)

Aureobasidium pullulans is a polyextremotolerant yeast-like fungus increasingly recognized for its role in food ecosystems and its emerging potential in flavour development and nutrient modulation. However, systematic evaluations of autochthonous grape-associated populations integrating technological performance and safety-related traits remain limited. This study provides a broad phenotypic screening of 70 isolates from Maraština grapes (Dalmatia, Croatia), applying an integrated functional screening approach to link enzymatic potential, environmental resilience, and food safety. Most isolates displayed multiple hydrolytic enzymes, with widespread cellulase, pectinase, xylanase, esterase, and protease activities. Several isolates showed very high enzymatic indices, supporting their potential for plant-derived substrate transformation, aroma release, and food processing applications. β-glucosidase and urease activities were common, while amylase was limited. Ecological screening confirmed robust adaptability to salinity, osmotic stress, and wide pH ranges. Notably, 31% of isolates demonstrated phosphate solubilization capacity, indicating a possible contribution to mineral bioavailability and nutritional enhancement. Safety screening revealed decarboxylation of selected amino acids, while two isolates lacked detectable activity, highlighting them as candidates for further safety evaluation. Overall, this work establishes a framework for selecting A. pullulans isolates for next-generation, flavour-oriented and nutritionally enhanced food applications, supporting sustainable bioprocessing and future industrial validation. Full article

Wetland degradation in soda saline–alkali ecosystems can profoundly alter belowground microbial communities, yet its effects on bacterial phylogenetic distribution and predicted ecological characteristics remain insufficiently understood. This study investigated soil physicochemical properties, enzyme activities, and bacterial communities across a wetland degradation gradient in the Halahai Provincial Nature Reserve, China, including reed wetland (RW), meadow steppe (MS), and degraded Suaeda saline patches (DS). Soil analyses were integrated with 16S rRNA gene amplicon sequencing, phylogenetic reconstruction, and FAPROTAX and BugBase prediction. DS showed significantly higher pH and electrical conductivity, but lower soil water content, organic carbon, nutrient availability, and urease activity than RW and MS. Alpha diversity analysis indicated that DS had lower bacterial richness and diversity, but higher dominance, whereas RW and MS did not differ significantly. Beta-diversity analysis revealed clear habitat-dependent separation, with DS harboring the most distinct community structure. Taxonomic and phylogenetic analyses indicated enrichment of Gemmatimonadota and the RCP2-54 lineage in DS, whereas RW and MS were more strongly associated with Pseudomonadota, Acidobacteriota, and related groups. Predicted functional and phenotypic analyses further suggested a shift toward stress-related and degradation-associated traits in DS. These findings demonstrate that wetland degradation reshaped the taxonomic composition, phylogenetic distribution, and predicted ecological characteristics of soil bacterial communities in this fragile ecosystem. Full article

Coastal aquifers are essential freshwater sources for domestic, agricultural, and industrial use, particularly in regions where surface water is limited. However, these systems face growing stress from saltwater intrusion, climate-driven reductions in recharge, sea level rise, and intensified groundwater extraction. This review synthesizes recent research on coastal aquifer responses to these pressures, highlighting the interplay between natural hydrogeologic conditions and human-induced demand. Across deltaic and sedimentary systems, studies consistently show declining groundwater levels, the landward migration of saline interfaces, and reduced aquifer buffering capacity, especially in areas with high evaporation and limited recharge. The review also evaluates emerging strategies to preserve coastal groundwater security. Integrated hydrological models, managed aquifer recharge (MAR), optimized abstraction schemes, and remote sensing-based monitoring are advancing adaptive management capabilities. In parallel, policy and nature-based interventions—such as aquifer protection zoning, wetland rehabilitation, and dune system restoration—support long-term resilience by enhancing natural recharge and reducing vulnerability. The overall findings reveal the need for climate-informed and locally tailored groundwater management. Future efforts should prioritize coupling high-resolution climate projections with aquifer system models, evaluating MAR viability in saline-prone environments, and strengthening collaborative governance frameworks to ensure sustainable and equitable use of coastal aquifers. Full article

Gelatin–alginate composite hydrogels are some of the most prevalent bioinks used for extrusion-based three-dimensional (3D) bioprinting because of their combined bioactivity and ability to ionically crosslink. Ionically crosslinked gelatin–alginate constructs containing human bone marrow–derived mesenchymal stem cells (hBM-MSCs) were characterised over time under standardised in vitro conditions to assess physicochemical properties and resultant cell behaviour. Water uptake and degradation were quantified over time in phosphate-buffered saline (PBS) and collagenase type II media for up to 21 days. Cell viability and metabolic activity were quantified, and osteogenic gene expression (RUNX2, COL1A1, OCN) was assessed. Raman spectroscopy and compressive mechanical characterisation were performed. Collagen and glycosaminoglycan-related peaks were observed from extracellular matrix (ECM)-associated components, with an increased presence of protein-associated signatures later in culture. Hydrogels displayed nonlinear elastic behaviour with increased stress after longer incubation times, suggesting no degradation of mechanical integrity over the duration of the study. Hydrogels experienced rapid hydration followed by decreased swelling over time, with a maximum swelling ratio at 24 h. Degradation rates significantly increased over longer incubation times (p < 0.001) and in collagenase media compared to PBS (p < 0.001). Observed differences were likely due to both ion-exchange-mediated network disassembly and the dissolution of gelatin components. Cell metabolic activity decreased under osteogenic culture conditions, while changes in osteogenic marker expression were sequential, suggesting a transition from proliferation to early osteogenic commitment in this 3D system. This work provides both physicochemical and biological characterisation of a commonly utilised gelatin–alginate bioink system, to provide future optimisations within the field of extrusion-based bone tissue engineering, a reproducible baseline for future optimisation of bioink systems in extrusion-based bone tissue engineering. Full article

Objectives: Seawater-immersed burn wounds are highly susceptible to contamination, persistent inflammation, oxidative stress, and delayed healing, while current irrigation solutions remain suboptimal for such acute injuries. This study aimed to evaluate the therapeutic efficacy and underlying mechanisms of plasma-activated water (PAW) as a novel irrigation strategy for these complex wounds. Methods: The antibacterial efficacy of PAW against marine pathogens was first evaluated in vitro. Subsequently, a rat model of seawater-immersed burn injury was established in male Sprague-Dawley (SD) rats to assess the therapeutic effects of PAW irrigation on wound healing, infection control, and underlying biological mechanisms. Results: In vitro, PAW significantly eradicated two major marine pathogens, Vibrio vulnificus and Vibrio parahaemolyticus (p < 0.001). In vivo, PAW markedly accelerated wound closure, achieving complete healing in 23.60 ± 6.50 days vs. 38.67 ± 2.08 days (Normal saline group) and 58.33 ± 10.97 days (Model group) (p < 0.05). PAW significantly reduced bacterial burden, modulated inflammation by decreasing interleukin-6 and increasing interleukin-10, and alleviated oxidative stress, as evidenced by reduced malondialdehyde levels and enhanced superoxide dismutase activity. Histological evaluation demonstrated enhanced re-epithelialization, collagen deposition, and increased expression of vascular endothelial growth factor and platelet endothelial cell adhesion molecule-1. No adverse effects on serum biochemistry or major organ histopathology were observed. Conclusions: PAW may be a safe, promising, and multifunctional irrigation strategy that promotes seawater-immersed burn healing through coordinated antibacterial, anti-inflammatory, antioxidant, and pro-angiogenic effects, highlighting its strong potential for clinical translation. Full article

Abiotic stress factors, including drought and salinity, severely limit crop productivity worldwide. Furthermore, the extensive use of herbicides, such as glyphosate, disrupts beneficial soil microbiota, further impairing crop growth. Plant growth-promoting bacteria (PGPB) represent a sustainable and efficient strategy to enhance crop yields, particularly under unfavorable environmental and soil conditions. In this study, we characterized Paenibacillus sp. JSM-10, newly isolated from glyphosate-exposed agricultural soil, for its stress tolerance and plant growth-promoting potential, including its morphology examined using complementary microscopy techniques. The strain tolerated up to 0.5 g/L glyphosate, 15 g/L NaCl, and 100 g/L polyethylene glycol (PEG-6000) without significant growth inhibition (p > 0.05), demonstrating robust resilience to such multiple abiotic stresses. Beyond its tolerance, the strain exhibited several beneficial characteristics, including indole-3-acetic acid (IAA) synthesis, siderophore production, and inorganic phosphate solubilization. Furthermore, both living cells and culture filtrates of JSM-10 exhibited a positive trend toward enhancing buckwheat growth under normal and saline conditions, with effect sizes ranging from Hedges’ g = 0.56−0.92. In addition, JSM-10 exhibited antagonistic activity against a range of pathogenic microorganisms, including Nigrospora oryzae, Bipolaris sorokiniana, Alternaria spp., and Escherichia coli. Altogether, these characteristics highlight the Paenibacillus sp. JSM-10 strain and its culture filtrates as promising candidates for application in organic farming aimed at promoting plant growth and improving stress tolerance via plant–microbe interactions. Full article

Blue crab (Callinectes sapidus) populations are of substantial ecological and economic importance. As a keystone species, C. sapidus plays a critical role in maintaining estuarine food webs while also supporting one of the most consumed and economically valuable seafood industries in Delaware and Maryland. This study investigated the presence of Callinectes sapidus reovirus 1 (CsRV1) in C. sapidus collected from Rehoboth Bay, Delaware, USA, using reverse transcription–quantitative polymerase chain reaction (RT-qPCR), and evaluated potential associations between viral occurrence and physicochemical parameters, including temperature, salinity, pH, turbidity, alkalinity, calcium hardness, nitrite, and chlorophyll-a. A total of eighteen traps were deployed across six study sites encompassing oyster aquaculture areas, artificial oyster reefs, and control sites with minimal structural habitat. CsRV1 was detected in blue crabs from Rehoboth Bay, confirming the presence of the virus within the Delaware Inland Bays; however, detections were limited to a small subset of sampled individuals. Among the environmental parameters examined, salinity exhibited the greatest interannual variability, while other physicochemical conditions remained relatively consistent across site types and sampling periods. Overall, environmental conditions during the study period were within ranges considered suitable for C. sapidus, indicating that the population is likely to experience limited environmental stress and minimal disease-related impacts under current conditions. Full article

Reactive oxygen species (ROS) are integral components of plant signaling networks that mediate interactions between plants and their environment, thereby regulating diverse physiological and biochemical processes. While controlled ROS production is essential for stress perception and signal transduction, excessive ROS accumulation induces oxidative damage. ROS-mediated lipid peroxidation of polyunsaturated fatty acids leads to the formation of highly electrophilic α,β-unsaturated carbonyl compounds collectively referred to as reactive carbonyl species (RCS). Under severe abiotic stress conditions, excessive RCS accumulation exerts cytotoxic effects and causes widespread cellular dysfunction. In contrast, at subtoxic levels, RCS function as important secondary messengers that modulate stress-responsive signaling pathways, including programmed cell death, stomatal regulation, and adaptive responses to abiotic stresses. This review critically synthesizes current advances in understanding the dual roles of ROS and RCS as both damaging agents and signaling molecules in plants. Particular emphasis is placed on the mechanistic basis of ROS-RCS crosstalk and their interactions in abiotic stress tolerance. Furthermore, this review highlights emerging research gaps and outlines future perspectives aimed at translating redox signaling insights into strategies for improving plant stress resilience under changing environmental conditions. Full article

Endophytic bacteria from plants adapted to arid and semi-arid environments represent an underexplored reservoir of microbial diversity with potential agricultural applications. Here, we report a polyphasic taxonomic and genome-based characterization of Achromobacter sp. isolates recovered from root and foliar tissues of Citrullus colocynthis and Peganum harmala, two medicinal plants thriving under harsh environmental conditions. Whole-genome sequencing, phylogenomic analyses, average nucleotide identity (ANI), digital DNA–DNA hybridization (dDDH), multilocus sequence typing, and detailed phenotypic profiling revealed three previously undescribed species, for which we propose the names Achromobacter colocynthi sp. nov., Achromobacter maghribensis sp. nov., and Achromobacter semiaridum sp. nov. Genome assemblies were highly complete (98.7–99.2%) with minimal contamination (<1%), supporting robust taxonomic inference. All three species displayed ANI and dDDH values below accepted thresholds relative to their closest phylogenetic neighbors, despite partial inconsistencies in 16S rRNA similarity for one isolate, highlighting the value of genome-wide metrics for species delineation. Phylogenomic analyses placed the novel taxa within Achromobacter sp. as distinct evolutionary lineages. Phenotypic characterization indicated broad metabolic versatility, including utilization of carbohydrates, organic acids, and amino acids, tolerance to moderate salinity and acidic pH, and resistance to multiple antimicrobial compounds, traits likely linked to adaptation to endophytic lifestyles under semi-arid conditions. Beyond their taxonomic novelty, the isolates exhibited in vitro traits associated with plant adaptation and stress tolerance, including IAA production, ACC deaminase activity, and tolerance to Zn, Cu, and Cd. Genomic analyses further indicated functions related to phosphate acquisition and stress response. These findings expand the taxonomic framework of Achromobacter sp., establish C. colocynthis and P. harmala as reservoirs of novel endophytic bacteria, and highlight their potential relevance for agricultural biotechnology in stress-prone environments. Full article

Jacalin-related lectins play crucial roles in plant adaptation to abiotic and biotic stresses. The rice genome encodes four putative jacalin-related lectin kinase genes (OsJacLKs), but their functions toward environmental stresses remain largely uncharacterized. This study demonstrates that a putative jacalin-related lectin kinase, OsJacLK1, conferred resistance to the rice blast fungus Magnaporthe oryzae rather than salt stress. OsJacLK1 protein exhibited agglutination activities and affinity toward chitin, fungal cell wall, and mannose. OsJacLK1 was transcriptionally activated by stress-related phytohormones salicylic acid (SA), methyl jasmonate (MeJA), abscisic acid (ABA), and indoleacetic acid (IAA), as well as salinity, chitin, and M. oryzae inoculation, suggesting its involvement in broad stress-responsive signaling pathways. Overexpression of OsJacLK1 in rice led to reduced susceptibility to rice blast disease, whereas loss-of-function osjaclk1 lines showed no significant phenotypic difference from wild-type plants upon infection. Enhanced resistance in OsJacLK1-overexpressing lines was associated with a stronger reactive oxygen species (ROS) burst and elevated hydrogen peroxide accumulation, accompanied by the up-regulation of defense-related genes (OsRac1, OsSGT1, OsMAPK6, OsPAL1, OsNAC4, OsPBZ1, OsAOS2, and OsJAZ8). Collectively, our findings establish that OsJacLK1 acts as a positive regulator of rice immunity against M. oryzae, modulating the cellular redox state, highlighting its potential as a candidate for genetic improvement of disease resistance in rice. Full article

Soil salinization is one of the major abiotic stresses that influences agricultural production and the environment. Auxin response factors (ARFs) are key components of the auxin signal transduction pathway, while their role in wheat salt stress responses remains unclear. In this study, we identified TaARF18 as a negative regulator of salt tolerance in wheat. The coding sequences of TaARF18-A, TaARF18-B, and TaARF18-D were 2106, 2088, and 2088 bp, respectively. TaARF18 is a hydrophilic protein featuring typical Auxin-resp and B3 DNA-binding domains and exhibits relatively high evolutionary conservation among Poaceae species. The expression of TaARF18 was upregulated under salt stress. TaARF18 predominantly accumulated in the nucleus. Silencing of TaARF18 via the BSMV-VIGS approach enhanced salt tolerance in wheat seedlings. In addition, haplotype analysis based on resequencing data from 355 wheat accessions identified 25, 31, and 16 haplotypes for TaARF18-A, TaARF18-B, and TaARF18-D, respectively. Fourteen wheat accessions carrying different haplotypes were evaluated under salt stress, and HapIII of TaARF18-A exhibited the highest level of salt tolerance, which can act as a strong selection locus in global wheat breeding. Our findings provide insight into the function of ARFs in salt stress responses and offer a potential target for CRISPR/Cas-mediated salt-tolerant wheat breeding programs. Full article

Temperature and salinity are key environmental factors for sea cucumber (Apostichopus japonicus) aquaculture. To better understand the molecular regulation mechanisms of A. japonicus under extreme environmental conditions, we collected metabolomic data from a control group (C: 16 °C, 30 salinity), a heat-stress group (HT: 30 °C, 30 salinity), a hypo-salinity group (LS: 16 °C, 20 salinity), and a heat plus hypo-salinity group (HL: 30 °C, 20 salinity). Liquid chromatography–mass spectrometry-based metabolomics was used to measure the changes in endogenous metabolites in the body wall of A. japonicus and detect differential metabolites and associated metabolic pathways. The results of metabolomic profiling identified a total of 349 secondary metabolites, enriched mainly in unsaturated fatty acid metabolism, cAMP signaling pathway, pantothenic acid and coenzyme A biosynthesis, as well as vitamin metabolism. Compared to the control group, levels of amino acids and lipids were enhanced during adaptation to high-temperature stress (HT and HL groups). Levels of pantothenic acid content increased in the LS group compared with its content in the control group, which suggests that stress promoted the TCA cycle in the body of A. japonicus, providing energy for movement. A. japonicus may adjust energy metabolism by altering pathways or adapt to environmental changes by regulating the activities of certain enzymes to maintain life activities and metabolic homeostasis. In response to these stresses, A. japonicus metabolism increased to bolster its antioxidant capacity and maintain cellular homeostasis and organismal stability. These results clarified the complex physiological processes involved in the response to stress and the maintenance of metabolism of the A. japonicus. This study provides novel insights into the metabolic regulation mechanisms that enable A. japonicus to cope with heat and hypo-salinity stresses. Full article

Soil salinization severely restricts rice growth and global grain production, posing a serious threat to food security. Dongxiang wild rice serves as an important genetic resource for improving salt tolerance in rice. In this study, a backcross inbred line (BIL) population derived from Dongxiang wild rice DY80 and an indica restorer line R974 were used to detect QTLs for salt tolerance at the germination and seedling stages. Four QTLs related to germination-stage salt tolerance and three QTLs for seedling-stage salt tolerance were identified, among which qSTS5 on chromosome 5 showed the largest effect with a LOD score of 8.0 and a phenotypic contribution rate of 14.8%. An F_2:3 population was further constructed to validate qSTS5, which increased its LOD value to 10.4 and phenotypic variation explanation rate to 18.5%, and the locus was finally delimited to a 2.3 Mb interval. Transcriptome analysis identified eight differentially expressed genes (DEGs) within the qSTS5 region under salt stress. Sequence comparison between the parents revealed that three DEGs had no coding-region variations, while the other five showed nucleotide polymorphisms leading to amino acid changes. Among them, Os05g0349800 encodes a LEA protein, a typical stress-responsive gene, and harbors a frameshift mutation in DY80. Combined with its induced expression pattern under salt stress, this gene was considered the most promising candidate for qSTS5. This study not only provides a stable major QTL for rice breeding for salt tolerance but also lays a foundation for dissecting the molecular mechanism of salt tolerance in Dongxiang wild rice. Full article

Seed germination represents a critical bottleneck for the establishment of halophytic crops under saline conditions. In Sarcocornia neei, a promising biosaline species, previous germination studies have focused almost exclusively on sodium chloride, despite the prevalence of sulfate-dominated salinity in many salt-affected environments. In this study, we evaluated the effects of salt type (NaCl vs. Na₂SO₄) and salinity level (0, 25, 50, 75 and 100% of sea water salinity) on seed germination of three natural populations from ecologically contrasting environments under controlled conditions. Germination percentage, rate and period and post-stress recovery were quantified. Seed germination responses were strongly site-dependent and differed markedly between salt types. Seeds from the inland saline population exhibited a euhalophytic germination pattern with low germination in distilled water and enhanced germination at moderate NaCl and Na₂SO₄ concentrations. In contrast, seeds from coastal populations showed the classical decline in germination with increasing salinity but displayed a high capacity for post-stress recovery, particularly under sulfate salinity. These results demonstrate that S. neei harbors substantial intraspecific variation in germination responses to both salt type and concentration, reflecting adaptation to local ionic environments. Our findings underscore the relevance of considering population-level variation when selecting plant material for biosaline agriculture and ecological restoration. Full article

Background: Anoectochilus roxburghii (Wall.) Lindl. is an endangered medicinal herb, and salt stress has been reported to promote the accumulation of bioactive secondary metabolites. Central carbon metabolism plays a key role in carbon allocation in plants; however, the integrated molecular and metabolic responses of A. roxburghii to salt stress remain largely unclear. Method: In this study, an integrated transcriptomic and metabolomic approach was employed to investigate the reprogramming of central carbon metabolism in A. roxburghii under 50, 100, and 200 mM NaCl treatments. Results: Metabolomic analysis revealed a significant accumulation of soluble sugars, which suggests enhanced osmotic adjustment and alteration in energy metabolism. Transcriptomic profiling identified 7019 upregulated and 5192 downregulated DEGs, with pathways related to the TCA cycle, galactose metabolism, and fructose/mannose metabolism predominantly upregulated, while oxidative phosphorylation was suppressed. Integrative transcriptome–metabolome profiling further identified key genes associated with oxaloacetate and fructose-6-phosphate, suggesting a coordinated regulation between central carbon metabolism and polysaccharide biosynthesis. Conclusions: Collectively, these findings demonstrate that salt stress induces coordinated metabolic and transcriptional reprogramming in A. roxburghii, driving carbon flux reallocation from growth-related processes toward osmoprotective metabolism. This provides a mechanistic basis for the enhancement of bioactive compounds under moderate stress and offers insights for improving both salt tolerance and medicinal quality in saline environments. Full article