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Keywords = red tide species

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16 pages, 5786 KiB  
Article
The Development of Rapid Test Strips for Alexandrum tamarense
by Zhang Kang, Jiahang Mu, Junhua Fang, Changgong Zhang and Kefu Zhou
Chemosensors 2025, 13(2), 53; https://doi.org/10.3390/chemosensors13020053 - 5 Feb 2025
Viewed by 857
Abstract
Among algae that synthesize paralytic shellfish toxins (PSTs), Alexandrium tamarense is a widely distributed and highly dangerous species with significant impacts on the marine environment and human health. Therefore, establishing fast and reliable monitoring technology for Alexandrium tamarense is crucial. Developing effective detection [...] Read more.
Among algae that synthesize paralytic shellfish toxins (PSTs), Alexandrium tamarense is a widely distributed and highly dangerous species with significant impacts on the marine environment and human health. Therefore, establishing fast and reliable monitoring technology for Alexandrium tamarense is crucial. Developing effective detection and early warning systems for toxic red tides is of paramount importance. Conventional detection methods, such as microscopy and molecular biology, are complex and time-consuming, requiring specialized personnel and equipment, which makes them unsuitable for on-site rapid testing. In this study, we successfully developed polyclonal and monoclonal antibodies targeting Alexandrium tamarense using colloidal gold immunochromatography technology. Based on these antibodies, we created colloidal gold test strips capable of detecting Alexandrium tamarense in water samples. These test strips enable rapid detection of the target algae in aquatic environments and semi-quantitative estimation of algal concentrations using a colorimetric card. They can quickly determine whether the concentration of red tide algae has reached a critical level, allowing for timely preventive measures. This innovation holds significant practical value and broad application potential. Full article
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25 pages, 4995 KiB  
Article
Dynamics of Lingulodinium polyedra Development in the Bulgarian Part of Black Sea (1992–2022)
by Daniela Klisarova, Dimitar Gerdzhikov, Petya Dragomirova, Nina Nikolova, Martin Gera and Petya Veleva
Diversity 2025, 17(2), 105; https://doi.org/10.3390/d17020105 - 30 Jan 2025
Viewed by 997
Abstract
Long-term data on the phytoplankton of the Bulgarian Black Sea (BBS) coast describe three states for the ecosystem: a “pristine” reference phase (1954–1970 years); an intensive anthropogenic eutrophication (1970–1992 years) phase; and a post-eutrophication phase after the early 1990s of the 20th century. [...] Read more.
Long-term data on the phytoplankton of the Bulgarian Black Sea (BBS) coast describe three states for the ecosystem: a “pristine” reference phase (1954–1970 years); an intensive anthropogenic eutrophication (1970–1992 years) phase; and a post-eutrophication phase after the early 1990s of the 20th century. The eutrophication period is characterised by ecosystem degradation and intense phytoplankton blooms, some of which were formed by the potentially toxic species Lingulodinium polyedra. This warm-water species is a red tide former that is associated with fish and shellfish mortality events. In the 1980s, L. polyedra reached the highest biomass of 84.4 g·m−3 in Varna Bay, BBS. The aim of this study (1992–2022) was to provide an overview of the development of L. polyedra in the phytoplankton biocenosis in the Bulgarian part of the Black Sea, taking into account the influence of anthropogenic stress and the climatic variables NAO and SST on the development of the species population. An analysis of the distribution of the dinoflagellate L. polyedra is based on a total of 5126 phytoplankton samples collected during the period between 1992 and 2022 under projects led by the Institute of Fish Resources, Varna. The samples were analyzed using standard methods validated for the Black Sea, and phytoplankton abundance and biomass were determined. The species are most abundant in summer in the coastal marine areas exposed to anthropogenic influence. During the analyzed period, a decrease in the abundance and biomass of L. polyedra in Bulgarian Black Sea waters were observed. It was found that the influence of climatic factors such as NAO and SST on the species population is from weak to moderate, and the correlation with NAO cycles is better expressed. Full article
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15 pages, 3232 KiB  
Article
Analysis on Bacterial Community of Noctiluca scintillans Algal Blooms Near Pingtan Island, China
by Yunguang Liu, Yutong Zhang, Haiyan Yao, Zewen Zheng, Wenbo Zhao and Gang Lin
Biology 2025, 14(1), 101; https://doi.org/10.3390/biology14010101 - 20 Jan 2025
Cited by 2 | Viewed by 1176
Abstract
Noctiluca scintillans, known as a global red tide species, is a common red tide species found in Pingtan Island. To examine the bacterial community structure in different environments during the red tide period of N. scintillans on Pingtan Island, samples were collected [...] Read more.
Noctiluca scintillans, known as a global red tide species, is a common red tide species found in Pingtan Island. To examine the bacterial community structure in different environments during the red tide period of N. scintillans on Pingtan Island, samples were collected from the Algal Bloom Area (ABA), Transition Area (TA), and Non-Algal Bloom Area (NBA) on 6 April 2022, and the environmental physicochemical factors and bacterial community were determined. The outbreak of N. scintillans red tide significantly impacted the water quality and bacterial community structure in the affected sea area. The water quality in the ABA has deteriorated markedly, with the contents of COD, NH4+-N, and PO43− in the ABA being significantly higher than those in the TA and NBA, while the pH is significantly lower than that in the TA and NBA. The richness, diversity, and evenness of the bacterial community in the ABA are all lower than those of the TA and NBA. For instance, the Shannon index values of the three sampling points are 4.41, 5.41, and 6.37, respectively. At the phylum level, the dominant bacterial phyla in the ABA are Proteobacteria, Firmicutes, and Cyanobacteria; in the TA, they are Proteobacteria, Bacteroidetes, and Firmicutes; and in the NBA, they are Proteobacteria, Bacteroidetes, and Cyanobacteria. At the genus level, the dominant bacterial genera in the ABA are Vibrio, Carnobacterium, Candidatus_Megaira, Planktomarina, and Pseudoalteromonas; in the TA, they are Vibrio, Planktomarina, Lentibacter, Glaciecola, and Jannaschia; and in the NBA, they are Planktomarina, Amylibacter, NS5_marine_group, Aurantivirga, and marine_metagenome. In the ABA, the combined proportion of Vibrio and Carnobacterium exceeds 50%, with Vibrio_splendidus accounting for 93% of the total Vibrio population. These research results can provide a scientific basis for clarifying the environmental characteristics and bacterial composition during the large-scale N. scintillans red tide in Pingtan Island. Full article
(This article belongs to the Special Issue Biology, Ecology and Management of Harmful Algae)
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12 pages, 11234 KiB  
Article
Advancements in the Programmable Hyperspectral Seawater Scanner Measurement Technology for Enhanced Detection of Harmful Algal Blooms
by John J. Langan and Jungyun Bae
J. Mar. Sci. Eng. 2024, 12(10), 1746; https://doi.org/10.3390/jmse12101746 - 3 Oct 2024
Cited by 1 | Viewed by 1150
Abstract
The Programmable Hyperspectral Seawater Scanner (PHySS) represents a significant breakthrough in monitoring harmful algal blooms (HABs), specifically targeting the “Florida red tide” caused by Karenia brevis. By utilizing a Fourth-Derivative Spectral Similarity Index (SI), this study establishes a strong positive correlation between [...] Read more.
The Programmable Hyperspectral Seawater Scanner (PHySS) represents a significant breakthrough in monitoring harmful algal blooms (HABs), specifically targeting the “Florida red tide” caused by Karenia brevis. By utilizing a Fourth-Derivative Spectral Similarity Index (SI), this study establishes a strong positive correlation between the SI and phytoplankton counts, underscoring the PHySS’s potential for early detection and effective management of HABs. Our findings suggest that the PHySS could act as a predictive tool, offering crucial lead time to mitigate the ecological and economic repercussions of blooms. However, this study also identifies certain limitations of the PHySS technology, such as its inability to differentiate among various phytoplankton species without additional physical verification of cell counts. This limitation highlights the need for a multifaceted approach to HAB management. Our research suggests that adopting a multi-modal monitoring strategy could lead to more sophisticated and effective methods for combating HABs, fostering an optimistic outlook for future advancements in this area. Full article
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30 pages, 3343 KiB  
Review
Typical Marine Ecological Disasters in China Attributed to Marine Organisms and Their Significant Insights
by Lulu Yao, Peimin He, Zhangyi Xia, Jiye Li and Jinlin Liu
Biology 2024, 13(9), 678; https://doi.org/10.3390/biology13090678 - 30 Aug 2024
Cited by 6 | Viewed by 4026
Abstract
Owing to global climate change or the ever-more frequent human activities in the offshore areas, it is highly probable that an imbalance in the offshore ecosystem has been induced. However, the importance of maintaining and protecting marine ecosystems’ balance cannot be overstated. In [...] Read more.
Owing to global climate change or the ever-more frequent human activities in the offshore areas, it is highly probable that an imbalance in the offshore ecosystem has been induced. However, the importance of maintaining and protecting marine ecosystems’ balance cannot be overstated. In recent years, various marine disasters have occurred frequently, such as harmful algal blooms (green tides and red tides), storm surge disasters, wave disasters, sea ice disasters, and tsunami disasters. Additionally, overpopulation of certain marine organisms (particularly marine faunas) has led to marine disasters, threatening both marine ecosystems and human safety. The marine ecological disaster monitoring system in China primarily focuses on monitoring and controlling the outbreak of green tides (mainly caused by outbreaks of some Ulva species) and red tides (mainly caused by outbreaks of some diatom and dinoflagellate species). Currently, there are outbreaks of Cnidaria (Hydrozoa and Scyphozoa organisms; outbreak species are frequently referred to as jellyfish), Annelida (Urechis unicinctus Drasche, 1880), Mollusca (Philine kinglipini S. Tchang, 1934), Arthropoda (Acetes chinensis Hansen, 1919), and Echinodermata (Asteroidea organisms, Ophiuroidea organisms, and Acaudina molpadioides Semper, 1867) in China. They not only cause significant damage to marine fisheries, tourism, coastal industries, and ship navigation but also have profound impacts on marine ecosystems, especially near nuclear power plants, sea bathing beaches, and infrastructures, posing threats to human lives. Therefore, this review provides a detailed introduction to the marine organisms (especially marine fauna species) causing marine biological disasters in China, the current outbreak situations, and the biological backgrounds of these outbreaks. This review also provides an analysis of the causes of these outbreaks. Furthermore, it presents future prospects for marine biological disasters, proposing corresponding measures and advocating for enhanced resource utilization and fundamental research. It is recommended that future efforts focus on improving the monitoring of marine biological disasters and integrating them into the marine ecological disaster monitoring system. The aim of this review is to offer reference information and constructive suggestions for enhancing future monitoring, early warning systems, and prevention efforts related to marine ecological disasters in support of the healthy development and stable operation of marine ecosystems. Full article
(This article belongs to the Special Issue Biology, Ecology and Management of Aquatic Macrophytes and Algae)
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16 pages, 728 KiB  
Article
Occurrence and Exposure Assessment of Lipophilic Shellfish Toxins in the Zhejiang Province, China
by Qin Weng, Ronghua Zhang, Pinggu Wu, Jiang Chen, Xiaodong Pan, Chenyang Zheng, Dong Zhao, Jikai Wang, Hexiang Zhang, Xiaojuan Qi, Junde Han, Zijie Lu and Biao Zhou
Mar. Drugs 2024, 22(6), 239; https://doi.org/10.3390/md22060239 - 24 May 2024
Cited by 1 | Viewed by 1577
Abstract
Although lipophilic shellfish toxins (LSTs) pose a significant threat to the health of seafood consumers, their systematic investigation and risk assessment remain scarce. The goals of this study were as follows: (1) analyze LST levels in commercially available shellfish in Zhejiang province, China, [...] Read more.
Although lipophilic shellfish toxins (LSTs) pose a significant threat to the health of seafood consumers, their systematic investigation and risk assessment remain scarce. The goals of this study were as follows: (1) analyze LST levels in commercially available shellfish in Zhejiang province, China, and determine factors influencing LST distribution; (2) assess the acute dietary risk of exposure to LSTs for local consumers during the red tide period; (3) explore potential health risks of LSTs in humans; and (4) study the acute risks of simultaneous dietary exposure to LSTs and paralytic shellfish toxins (PSTs). A total of 546 shellfish samples were collected. LSTs were detected in 89 samples (16.3%) at concentrations below the regulatory limits. Mussels were the main shellfish species contaminated with LSTs. Spatial variations were observed in the yessotoxin group. Acute exposure to LSTs based on multiple scenarios was low. The minimum tolerable exposure durations for LSTs calculated using the mean and the 95th percentile of consumption data were 19.7 and 4.9 years, respectively. Our findings showed that Zhejiang province residents are at a low risk of combined exposure to LSTs and PSTs; however, the risk may be higher for children under 6 years of age in the extreme scenario. Full article
(This article belongs to the Special Issue Emerging Toxins Accumulation in Shellfish)
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13 pages, 598 KiB  
Article
Red Tide Outreach in Florida: Message Framing, Environmental Emotions, and Support for Mitigation
by Brooke Harowitz, Catherine C. Macdonald and Julia Wester
Coasts 2024, 4(1), 21-33; https://doi.org/10.3390/coasts4010002 - 4 Jan 2024
Viewed by 2174
Abstract
“Red tide” is the popular name for a harmful algal bloom that occurs frequently in Florida waters and has significant impacts on the environment, the economy, and human and animal health. This paper addresses the limited understanding of public attitudes surrounding red tide [...] Read more.
“Red tide” is the popular name for a harmful algal bloom that occurs frequently in Florida waters and has significant impacts on the environment, the economy, and human and animal health. This paper addresses the limited understanding of public attitudes surrounding red tide and the potential for message framing to increase support for mitigation action. A sample of Florida residents (n = 498) was randomly shown a digital article framed around different red tide impacts (economic loss, human health risks, ecosystem damage, or harm to charismatic species) or a control article not framed around a specific red tide impact. Participants were then queried about their emotional responses, support for red tide mitigation policies, and intentions to change their behavior to mitigate impacts. Participants reported higher levels of negative emotions after viewing the harm to charismatic megafauna framing, indicating that messaging may play a significant role in eliciting environmental emotions. Message frames did not significantly impact other policy attitudes. Results demonstrate barriers to shifting support for mitigation where public support for action is already high. Full article
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16 pages, 2988 KiB  
Article
Oxidative Stress and DNA Damage in Pagrus major by the Dinoflagellate Karenia mikimotoi
by Yun Kyung Shin, Do Yeon Seo, Hye-Jin Eom, Mira Park, Minji Lee, Young-Eun Choi, Young-Seok Han, Jae-Sung Rhee and Youn-Jung Kim
Toxins 2023, 15(10), 620; https://doi.org/10.3390/toxins15100620 - 19 Oct 2023
Cited by 7 | Viewed by 2463
Abstract
Karenia mikimotoi is a common species of red tide dinoflagellate that causes the mass mortality of marine fauna in coastal waters of Republic of Korea. Despite continuous studies on the ecophysiology and toxicity of K. mikimotoi, the underlying molecular mechanisms remain poorly [...] Read more.
Karenia mikimotoi is a common species of red tide dinoflagellate that causes the mass mortality of marine fauna in coastal waters of Republic of Korea. Despite continuous studies on the ecophysiology and toxicity of K. mikimotoi, the underlying molecular mechanisms remain poorly understood. Red sea bream, Pagrus major, is a high-value aquaculture fish species, and the coastal aquaculture industry of red sea bream has been increasingly affected by red tides. To investigate the potential oxidative effects of K. mikimotoi on P. major and the molecular mechanisms involved, we exposed the fish to varying concentrations of K. mikimotoi and evaluated its toxicity. Our results showed that exposure to K. mikimotoi led to an accumulation of reactive oxygen species (ROS) and oxidative DNA damage in the gill tissue of P. major. Furthermore, we found that K. mikimotoi induced the activation of antioxidant enzymes, such as superoxide dismutase, catalase, glutathione peroxidase, and glutathione reductase, in the gill tissue of P. major, with a significant increase in activity at concentrations above 5000 cells/mL. However, the activity of glutathione S-transferase did not significantly increase at the equivalent concentration. Our study confirms that oxidative stress and DNA damage is induced by acute exposure to K. mikimotoi, as it produces ROS and hypoxic conditions in P. major. In addition, it was confirmed that gill and blood samples can be used as biomarkers to detect the degree of oxidative stress in fish. These findings have important implications for the aquaculture of red sea bream, particularly in the face of red tide disasters. Full article
(This article belongs to the Section Marine and Freshwater Toxins)
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14 pages, 1377 KiB  
Article
Feeding Behavior Responses of the Small Copepod, Paracalanus parvus, to Toxic Algae at Different Concentrations
by Zixuan Ding, Xiaohong Sun, Yiming Qiao, Ying Liu and Jihua Liu
Animals 2023, 13(19), 3116; https://doi.org/10.3390/ani13193116 - 6 Oct 2023
Cited by 3 | Viewed by 1810
Abstract
The feeding relationship between copepods and phytoplankton has immense ecological significance. This study investigated the feeding behavior of copepods by studying the feeding selectivity of Paracalanus parvus, a key small copepod species, using a high-speed camera. The feeding behavior of P. parvus [...] Read more.
The feeding relationship between copepods and phytoplankton has immense ecological significance. This study investigated the feeding behavior of copepods by studying the feeding selectivity of Paracalanus parvus, a key small copepod species, using a high-speed camera. The feeding behavior of P. parvus separately fed on three algae, Prorocentrum minimum, Alexandrium minutum, and Thalassiosira weissflogii, was studied at five different concentrations. The factors characterizing feeding behavior, including the beating frequency (BF), beating time (BT), and rejection behavior, were analyzed. The average BT and BF of P. parvus fed on toxic algae were significantly lower than those of copepods fed on nontoxic algae, indicating that the toxic algae negatively affected their feeding behavior. There were no significant differences in feed rejection among the three algae during the short period of experimentation, indicating that the rejection behavior was insignificant in the early period (within 20 min) of feeding on toxic algae. The feeding behavior was inhibited when the concentration reached 250 cells/mL. The BT was initially affected at increasing concentrations followed by the BF, and P. minimum and A. minutum reduced the BF at concentrations of 250 and 1000 cells/mL, respectively. Analysis of the average BFs revealed that P. parvus was more significantly affected by P. minimum containing diarrheal shellfish poison than by A. minutum containing paralytic shellfish poison. The BF of copepods fed on P. minimum was significantly lower than that of copepods fed on A. minutum at 250–500 cells/mL but was not significantly different from that at 1000 cells/mL. This indicated that the inhibitory effect of P. minimum on the feeding behavior was more significant at concentrations observed at the onset of red tide blooms (0.25–0.5 × 102 cells/mL), but insignificant at concentrations reaching those in advanced red tides (>103 cells/mL). This study demonstrates that toxic dinoflagellates alter the feeding behavior of copepods and describes the variations in their feeding response to different algal species and concentrations. The findings provide crucial insights for further studies on the feeding relationship between copepods and phytoplankton and on functional assessment of plankton ecosystems. Full article
(This article belongs to the Collection Behavioral Ecology of Aquatic Animals)
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16 pages, 1915 KiB  
Article
Tidal Variations of Fish Larvae Measured Using a 15-Day Continuous Ichthyoplankton Survey in Subei Shoal: Management Implications for the Red-Crowned Crane (Grus japonensis) Population in Yancheng Nature Reserve
by Min Xu, Zunlei Liu, Xiaojing Song, Fei Wang, Yihe Wang, Linlin Yang, Takayoshi Otaki, Jiabin Shen, Teruhisa Komatsu and Jiahua Cheng
Animals 2023, 13(19), 3088; https://doi.org/10.3390/ani13193088 - 3 Oct 2023
Cited by 3 | Viewed by 1552
Abstract
The National Yancheng Rare Birds Nature Reserve is a vitally important staging habitat for the wild population of red-crowned cranes (Grus japonensis) in China. The population relies on local high-protein food sources, such as fish juveniles, to fuel their migratory journeys. [...] Read more.
The National Yancheng Rare Birds Nature Reserve is a vitally important staging habitat for the wild population of red-crowned cranes (Grus japonensis) in China. The population relies on local high-protein food sources, such as fish juveniles, to fuel their migratory journeys. However, little is known about the ecology of the fish larvae and juveniles that migrate to the inshore area via tidal rhythm in Subei Shoal, which is adjacent to the reserve. Therefore, we used a fixed study station (32°55′1.2″ N, 121°19′58.8″ E) to conduct a continuous 15-day ichthyoplankton survey at 2 h intervals beginning at 05:00 on 25 April and ending at 03:00 on 10 May 2019. We identified the tidal variations in the number of fish larvae and juveniles and the number at various developmental stages and assessed how they were related to environmental variables such as sea surface temperature, salinity, turbidity, and tidal height in the Dafeng Sea area of Subei Shoal. We found that the number of species and larval individuals were highest and lowest, respectively, at the highest and lowest tidal height, and they obviously increased and decreased with the rising and ebb tide, respectively. Our findings indicate that the variation in numbers of the larvae and juveniles depends on species and developmental stage. The species Acanthogobius ommaturus, Pholis fangi, Cynoglossus joyneri, Liza haematocheila, and Lateolabrax japonicus and the total number of larvae were most influenced by tidal height. These results provide a better understanding of the habitat of prey species of the red-crowned crane wild population as well as scientific data that can be applied to manage the wild population in the reserve sustainably. Full article
(This article belongs to the Section Aquatic Animals)
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15 pages, 3145 KiB  
Article
HPLC-Based Detection of Two Distinct Red Tide Causative Species (Mesodinium rubrum and Margalefidinium polykrikoides) in the South Sea of Korea
by Yejin Kim, Sanghoon Park, Hyo-Keun Jang, Ha-Young Choi, Jae-Hyung Lee, Seung-Won Jung, Wonkook Kim, Sooyoon Koh, Moonho Son, Seok-Nam Kwak, So-Hyun Ahn, Soonmo An and Sang-Heon Lee
Water 2023, 15(17), 3050; https://doi.org/10.3390/w15173050 - 25 Aug 2023
Cited by 1 | Viewed by 2048
Abstract
Various approaches have been applied to red tide monitoring in Korea since reliable information on phytoplankton communities is crucial. In this study, we employed a high-performance liquid chromatography (HPLC) method to analyze two types of red tide, Mesodinium rubrum and Margalefidinium polykrikoides (also [...] Read more.
Various approaches have been applied to red tide monitoring in Korea since reliable information on phytoplankton communities is crucial. In this study, we employed a high-performance liquid chromatography (HPLC) method to analyze two types of red tide, Mesodinium rubrum and Margalefidinium polykrikoides (also known as Cochlodinium polykrikoides), along the southern coasts of Korea. During the M. rubrum red tide on 8 August 2022, an unusual dominance of cryptophytes was observed, being the most dominant phytoplankton group. A significant positive correlation was found between alloxanthin concentrations, a marker pigment of cryptophytes, and M. rubrum cell numbers (p < 0.01, r = 0.830), indicating that HPLC-derived alloxanthin concentrations can serve as a valuable indicator for identifying red tides caused by M. rubrum and estimating cell numbers. However, it is crucial to consider the temporal dynamics of the prey–predator relationship between cryptophytes and M. rubrum. Further investigation is required to understand the environmental conditions that promote cryptophyte predominance and their role in M. rubrum red tide development. In the second field campaign on 29 August 2022, we observed a significant correlation between the concentration of peridinin, a marker pigment for dinoflagellates, and M. polykrikoides cell numbers (p < 0.01, r = 0.663), suggesting that peridinin can serve as a reliable indicator of M. polykrikoides red tides. In conclusion, HPLC-derived pigments, namely alloxanthin and peridinin, can be used to effectively monitor red tides caused by M. rubrum and M. polykrikoides, respectively. However, to overcome certain methodological limitations of HPLC, future studies should explore additional markers or analytical techniques capable of differentiating M. polykrikoides from other coexisting dinoflagellate species. Furthermore, the broad applicability of our method requires thorough investigation in diverse ecosystems to fully comprehend its scope and limitations. Future research should focus on evaluating the method’s efficacy in different contexts, accounting for the distinct traits of the ecosystems under consideration. Full article
(This article belongs to the Special Issue Harmful Algae Control)
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23 pages, 8715 KiB  
Article
Dorsal Fin Spines and Rays for Nonlethal Ageing of Goliath Grouper Epinephelus itajara
by Jessica L. Carroll, Robert D. Ellis, Angela B. Collins and Debra J. Murie
Fishes 2023, 8(5), 239; https://doi.org/10.3390/fishes8050239 - 3 May 2023
Cited by 4 | Viewed by 2824
Abstract
Atlantic Goliath Grouper, Epinephelus itajara, the largest grouper in the western North Atlantic, exhibits life history characteristics (e.g., it is slow-growing, long-lived, and late-maturing) that make it particularly susceptible to fishing pressure. Otoliths, the structure typically processed for age determination, are usually [...] Read more.
Atlantic Goliath Grouper, Epinephelus itajara, the largest grouper in the western North Atlantic, exhibits life history characteristics (e.g., it is slow-growing, long-lived, and late-maturing) that make it particularly susceptible to fishing pressure. Otoliths, the structure typically processed for age determination, are usually collected as part of fishery monitoring, but otoliths are not available from Goliath Grouper due to a harvest moratorium enacted in 1990 for United States waters. Alternative structures—such as dorsal fin rays or spines—can be acquired for ageing via nonlethal sampling and may provide reliable age estimates. Since 2006, the Florida Fish and Wildlife Conservation Commission (FWC) has been collecting incidental Goliath Grouper samples from mortality events including those from cold kills and red tides. Corresponding otolith, dorsal fin ray and dorsal fin spine samples were compared to determine the accuracy and precision of the external ageing structures. Marginal increment analyses indicated that annulus (translucent zone) deposition occurred primarily in March–June on spines and in April–June on rays. While ages determined from both rays and spines exhibited high precision, the accuracy compared to otolith ages was low as a result of systematic underageing of both external structures, particularly at the oldest age classes. A correction factor was applied to rays and spines that remedied the underageing, but the correction factor was more successful for spines. An analysis of ray and spine section accuracy based on nonlethal structure removal from the fish (i.e., comparing ages from sections at the base of the structure within the body to those sectioned from the external surface of the body) determined that spines can be accurately aged when sampled distal of the base of the structure, but that rays cannot. Nonlethal sampling and ageing of Goliath Grouper spines facilitated by public participation could address management goals and help determine the offshore population age structure. Simultaneously, it could contribute critical data needed for a traditional stock assessment, should such a path be warranted by the recovery or management of the species. Full article
(This article belongs to the Special Issue Advances in Atlantic Goliath Grouper Research)
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15 pages, 1466 KiB  
Article
Shorebird Monitoring Using Spatially Explicit Occupancy and Abundance
by Eve Bohnett, Jessica Schulz, Robert Dobbs, Thomas Hoctor, Dave Hulse, Bilal Ahmad, Wajid Rashid and Hardin Waddle
Land 2023, 12(4), 863; https://doi.org/10.3390/land12040863 - 11 Apr 2023
Cited by 2 | Viewed by 2762
Abstract
Loss of habitat and human disturbance are major factors in the worldwide decline of shorebird populations, including that of the threatened migratory piping plover (Charadrius melodus). From 2013 to 2018, we conducted land-based surveys of the shorebird community every other week [...] Read more.
Loss of habitat and human disturbance are major factors in the worldwide decline of shorebird populations, including that of the threatened migratory piping plover (Charadrius melodus). From 2013 to 2018, we conducted land-based surveys of the shorebird community every other week during the peak piping plover season (September to March). We assessed the ability of a thin plate spline occupancy model to identify hotspot locations on Whiskey Island, Louisiana, for the piping plover and four additional shorebird species (Wilson’s plover (Charadrius wilsonia), snowy plover (Charadrius nivosus), American oystercatcher (Haematopus palliatus), and red knot (Calidris canutus)). By fitting single-species occupancy models with geographic thin plate spline parameters, hotspot priority regions for conserving piping plovers and the multispecies shorebird assemblage were identified on the island. The occupancy environmental covariate, distance to the coastline, was weakly fitting, where the spatially explicit models were heavily dependent on the spatial spline parameter for distribution estimation. Additionally, the detectability parameters for Julian date and tide stage affected model estimations, resulting in seemingly inflated estimates compared to assuming perfect detection. The models predicted species distributions, biodiversity, high-use habitats for conservation, and multispecies conservation areas using a thin-plate spline for spatially explicit estimation without significant landscape variables, demonstrating the applicability of this modeling approach for defining areas on a landscape that are more heavily used by a species or multiple species. Full article
(This article belongs to the Special Issue Modeling Biodiversity and Landscape Conservation Planning)
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14 pages, 8190 KiB  
Article
Genetic Diversity and Geographical Distribution of the Red Tide Species Coscinodiscus granii Revealed Using a High-Resolution Molecular Marker
by Hailong Huang, Qing Xu, Huiyin Song and Nansheng Chen
Microorganisms 2022, 10(10), 2028; https://doi.org/10.3390/microorganisms10102028 - 14 Oct 2022
Cited by 4 | Viewed by 2397
Abstract
Diatoms are responsible for approximately 40% of the global primary photosynthetic production and account for up to 20% of global carbon fixation. Coscinodiscus granii is a red tide forming species of the phylum Bacillariophyta that has been detected in a wide range of [...] Read more.
Diatoms are responsible for approximately 40% of the global primary photosynthetic production and account for up to 20% of global carbon fixation. Coscinodiscus granii is a red tide forming species of the phylum Bacillariophyta that has been detected in a wide range of coastal regions, suggesting the possibility of the existence of high genetic diversity with differential adaptation. Common molecular markers including 18S rDNA, 16S rDNA, ITS, cox1, and rbcL do not provide sufficient resolution for distinguishing intra-species genetic diversity, hindering in-depth research on intra-species genetic diversity and their spatial and temporal dynamics. In this project, we aimed to develop molecular markers with high resolution and specificity for C. granii, attempting to identify different taxa of this species, which will set up a stage for subsequent functional assays. Comparative genomics analysis of the mtDNAs of C. granii strains identified a genomic region with high genomic variations, which was used to guide the development of a molecular marker with high resolution and high specificity. This new molecular marker, which was named cgmt1 (C. granii mitochondrial 1), was 376 bp in size and differentiated C. granii samples collected in coastal regions of China into three different clades. Preliminary analysis of field samples collected in various coastal regions in China revealed that C. granii clades were almost exclusively found in the Bohai Sea and the north Yellow Sea. This newly developed molecular marker cgmt1 could be used for tracking intra-species genetic diversity and biogeographic distribution of C. granii in different ecosystems. Full article
(This article belongs to the Special Issue Microbial Communities on the Surface of Algae)
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23 pages, 9024 KiB  
Article
Multi-Sensor Remote Sensing of Intertidal Flat Habitats for Migratory Shorebird Conservation
by Richard G. Lathrop, Daniel Merchant, Larry Niles, Danielle Paludo, Carlos David Santos, Carmen Espoz Larrain, Stephanie Feigin, Joseph Smith and Amanda Dey
Remote Sens. 2022, 14(19), 5016; https://doi.org/10.3390/rs14195016 - 9 Oct 2022
Cited by 5 | Viewed by 2936
Abstract
Many species of shorebirds migrate long distances from their overwintering grounds in the southern hemisphere to breeding grounds in the northern hemisphere. The coastal intertidal zone, consisting of sand and mud flats exposed at low tide and covered at high tide, is heavily [...] Read more.
Many species of shorebirds migrate long distances from their overwintering grounds in the southern hemisphere to breeding grounds in the northern hemisphere. The coastal intertidal zone, consisting of sand and mud flats exposed at low tide and covered at high tide, is heavily used as a migratory stopover or overwintering habitat. Understanding the spatial distribution of sediment types at these stopover sites is a critical step for understanding habitat use by shorebird species. Due to their importance as overwintering and stopover habitat for the imperiled western Atlantic subpopulation of the shorebird, the red knot (Calidris canutus rufa), as well as other migratory shorebirds, the northern coast of Brazil between Pará and Maranhão, and Bahía Lomas in northern Tierra del Fuego, Chile, were selected for further investigation as to the applicability of remotely sensed characterization of the intertidal flat habitats. Examination of the Landsat 8 multispectral reflectance and Sentinel-1 SAR backscatter reveals that sand and mud represent endmembers at opposite ends of a continuous gradient in feature space. While remotely sensed data can be used to discriminate between mud and sand intertidal types, the spectral relationships varied between the two very different geographic locations. The inclusion of both multispectral and radar sensing imagery can lead to important insights about the physical properties of the sediment that would be omitted by using one data source alone. Spectral unmixing techniques in Google Earth Engine were used to map the intertidal zone into general sediment classes spanning the gradient (i.e., mud, sandy mud, muddy sand, and sand). Comparison of the mapped outputs with field reference data suggests that mapping of mud- vs. sand-dominated areas can be accomplished with reasonable accuracy (overall accuracy of 75%). Full article
(This article belongs to the Special Issue Application of Remote Sensing in Migratory Birds Conservation)
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