Search Results (176)

Chitin synthase (CHS) is essential for maintaining exoskeletal integrity and environmental adaptability in insects. CHS genes are categorized into two types, CHS1 and CHS2. Hemipteran insects possess only the CHS1 gene due to the absence of a peritrophic matrix (PM) in their midgut. However, the identification and functional characterization of the CHS1 gene in Pentatomidae species have not been reported. This study reports the first identification of a CHS gene, ArmaCHS1, from the predatory stink bug, Arma chinensis, and investigates its role in response to temperature stress. The ArmaCHS1 open reading frame spans 4407 bp, encoding a protein of 1468 amino acids, with 14 transmembrane helices and seven N-glycosylation sites. Phylogenetic analysis confirmed its classification within the CHS1 clade, closely related to CHS1 from Halyomorpha halys. qRT-PCR analysis revealed that ArmaCHS1 is predominantly expressed in the exoskeleton and displays developmentally regulated expression (lowest in eggs, highest in adults). Temperature stress experiments demonstrated that ArmaCHS1 expression was significantly upregulated at low temperatures (12 °C, 19 °C) and markedly downregulated at high temperatures (33 °C, 40 °C). These findings indicate that ArmaCHS1 likely contributes to thermal adaptation in A. chinensis by modulating chitin biosynthesis, providing new insights into the environmental stress responses of beneficial predatory insects. Full article

Background: Reading difficulties are closely linked to phonological awareness (PA), though PA tasks vary in complexity and cognitive demands. Recent research suggests that dyslexia reflects multiple cognitive risk factors, aligned with multi-level models of reading and recent theories of complex modularity. These models propose that different tasks engage different cognitive modules depending on their structure, according to a dynamic and graded organization. Methods: This study investigates cognitive functions that predict performance on a complex PA task (spoonerism) in 115 fourth-grade Italian students. Results: The results indicate that: (1) dividing the sample into high- and low-performing groups in verbal working memory (alpha span test) and visuospatial working memory (object updating task) revealed that students with lower working memory capacity performed significantly worse on the spoonerism task—underscoring the importance of general working memory for this type of activity; (2) Gaussian graphical models showed that spoonerism performance was strongly associated with the object updating task (r = 0.47) and the alpha span test (r = 0.33), confirming a close link between this phonological task and general working memory. Conclusions: These findings support the view that complex PA tasks depend on a broader set of cognitive systems beyond phonological processing. They align with theories of dynamic modularity, which propose that modularity arises from task demands, not fixed anatomical constraints. In children, the involvement of executive attention suggests that such tasks are not yet automatized but rely on central cognitive control. Understanding this complexity is crucial for interpreting reading performance and developing targeted, multi-componential interventions. Full article

This study examines the performance of a GaN HEMT with a 150 nm gate length, fabricated on silicon carbide, across various operational modes, including direct current (DC), radio frequency (RF), and small-signal parameters. The evaluation of DC, RF, and small-signal performance under diverse bias conditions remains a relatively unexplored area of study for this specific technology. The DC characteristics revealed relatively little I_ds at zero gate and drain voltages, and the current grew as V_gs increased. Essential measurements include I_dss at 109 mA and I_dssm at 26 mA, while the peak g_m was 62 mS. Because transconductance is sensitive to variations in V_gs and V_ds, it shows “Vth _roll-off,” where Vth decreases as V_ds increases. The transfer characteristics corroborated this trend, illustrating the impact of drain-induced barrier lowering (DIBL) on threshold voltage (Vth) values, which spanned from −5.06 V to −5.71 V across varying drain-source voltages (V_ds). The equivalent-circuit technique revealed substantial non-linear behaviors in capacitances such as C_gs and C_gd concerning V_gs and V_ds, while also identifying extrinsic factors including parasitic capacitances and resistances. Series resistances (R_gs and R_gd) decreased as V_gs increased, thereby enhancing device conductivity. As V_gs approached neutrality, particularly at elevated V_ds levels, the intrinsic transconductance (g_mo) and time constants (τ_gm, τ_gs, and τ_gd) exhibited enhanced performance. f_t and f_max, which are essential for high-frequency applications, rose with decreasing V_gs and increasing V_ds. When V_gs approached −3 V, the S₂₁ and Y₂₁ readings demonstrated improved signal transmission, with peak S₂₁ values of approximately 11.2 dB. The stability factor (K), which increased with V_ds, highlighted the device’s operational limits. The robust correlation between simulation and experimental data validated the equivalent-circuit model, which is essential for enhancing design and creating RF circuits. Further examination of bias conditions would enhance understanding of the device’s performance. Full article

Background: Developmental dyslexia (DD) is the most common form of specific learning disorders (SLDs). From a neurocognitive point of view, dyslexic reading is associated with atypical neurofunctional patterns in the left hemisphere, mainly in the posterior areas linked to lexical access and phonological processing. Nowadays, rehabilitation treatments do not aim to fix the disorder but rather improve adaptive skills. On the other hand, the transcranial direct current stimulation (tDCS) has recently gained popularity in this field. In fact, a few studies have documented enhanced accuracy and speed after the tDCS over the parietal cortex, although the results were mainly limited to non-word reading. Methods: We conducted a single-case study employing an innovative multifocal eight-channel tDCS aimed at increasing the reading network activity in the left hemisphere and inhibiting the contralateral areas. The participant was a 9-year-old boy with a diagnosis of severe mixed-type specific learning disorder. The high-definition multifocal tDCS was administered over key areas of the frontal, temporal, parietal, and occipital lobes (four 3.14 cm² electrodes per hemisphere) in conjunction with tachistoscope training over a span of 10 weeks, with three sessions per week for a total of thirty sessions. Standardized assessments of reading were carried out at the beginning, at the end of the treatment, and at one- and six-month follow-up. Results: The treatment led to a 77% improvement in the accuracy of passage reading and an 83% improvement in the reading of high-frequency short words, with stable results at the 1- and 6-month follow-up. By contrast, in line with the severity of the disorder, there were only slight improvements in the speed parameter. Conclusions: This is the first study to document such remarkable improvements in reading in a case of severe SLD: if confirmed, these promising findings could pave the way for an effective, non-invasive rehabilitation for SLDs using multifocal tDCS. However, future studies are needed to overcome the limitations of single-case studies, such as the lack of control conditions and quantifiable analysis. Full article

A novel barna-like virus was found to be associated with field-collected Afrina sporoboliae plant-parasitic nematodes. The positive-sense, single-stranded RNA genome of this virus, named Afrina barna-like virus (AfBLV), comprises 4020 nucleotides encoding four open reading frames (ORFs). ORF 1 encodes a protein product spanning a transmembrane, a peptidase, and VPg domains, whereas an overlapping ORF 2 encodes an RNA-dependent RNA polymerase (RdRP). ORF2 may be expressed via a −1 translational frameshift. In phylogenetic reconstructions, the RdRP of AfBLV was placed inside a separate clade of barna and barna-like viruses related to but distinct from the genera in the Solemoviridae and Alvernaviridae families, within the overall lineage of Sobelivirales. ORF 3 of AfBLV encodes a protein product of 206 amino acids (aa) long with homology to a putative protein encoded by a similarly positioned gene of an uncharacterized virus sequence identified previously as Barnaviridae sp. ORF 4 encodes a 161 aa protein with no significant similarities to sequences in the GenBank databases. AfBLV is the first barnavirus found in a nematode. Sequence comparisons of the AfBLV genome and genomes of other barna-like viruses suggested that a recombination event was involved in the evolution of AfBLV. Analyses of the phylogeny of RdRPs and genome organizations of barna-like and solemo-like viruses support the re-classification of Barnavirus and Dinornavirus genera as members of the Solemoviridae family. Full article

Chrysomya megacephala, as one of the common blowflies, displays biological characteristics, such as ovoviviparity and carrion-feeding adaptation. Thus, this species is generally considered of significant ecological, medical, and forensic importance. However, without a high-quality pseudo-chromosome genome for C. megacephala, elucidating its evolutionary trajectory proved difficult. Herein, we assembled and analyzed a high-quality chromosome-level genome assembly of the C. megacephala, combined with PacBio HiFi long reads, Hi-C data, and Illumina reads. The pseudo-chromosomes assembly of C. megacephala spans 629.44 Mb, with 97.05% anchored to five chromosomes. Final assembly includes 1056 contigs (N50 = 1.68 Mb), and 97 scaffolds (N50 = 121.37 Mb), achieving 98.90% BUSCO completeness (n = 1367). Gene annotation predicted 17,071 protein-coding genes (95.60% BUSCO completeness), while repeat masking identified 244.26 Mb (38.82%) as repetitive elements. Additionally, 3740 non-coding RNAs were characterized. Gene family analyses resulted in 10,579 gene families, containing 151 gene families that experienced rapid evolution. Comparative genomic analyses showed that the expanded genes are related to reproduction and necrophagous habits. In addition, we annotated the gene family P450s, CCEs, IRs, GRs, and ORs, all of which represent remarkable expansion, playing a crucial role in the mechanism of locating the hosts for forensic insects. Our research establishes a high-quality genome sequence to facilitate subsequent molecular investigations into significant species within forensic entomology. Full article

Plant mitochondrial genomes exhibit extensive size variability and structural complexity. Here, we report the complete mitochondrial genome of Trichopus zeylanicus, an endemic medicinal plant from the Western Ghats. The mitochondrial genome was assembled using a combination of Illumina short-read and PacBio long-read sequencing technologies, followed by extensive annotation and comparative analysis. The circular mitogenome spans 709,127 bp with a GC content of 46%, encoding 32 protein-coding genes, 17 tRNAs, and three rRNAs. Comparative analysis with other monocot mitochondrial genomes revealed conserved gene clusters but also significant lineage-specific rearrangements. Despite genome size similarities, T. zeylanicus displayed marked divergence in gene order, suggesting that genome size does not necessarily correlate with structural conservation. The genome contains 6.7% chloroplast-derived sequences and 324 predicted RNA-editing sites, predominantly in the first and second codon positions. Phylogenetic analysis based on mitochondrial genes placed T. zeylanicus as a distinct lineage within Dioscoreales, supporting its evolutionary uniqueness. This work provides the first mitogenomic resource for Dioscoreales and advances our understanding of mitochondrial diversity and evolution in monocots. Full article

Early modern theologians often cast female curiosity as both a moral flaw and an epistemic transgression. Aware of this suspicion, Teresa of Ávila professed to have renounced such dangerous impulses in her youth. Yet the persistent presence of curiosity in her writings suggests a strategic redeployment—one that fosters attentiveness and subtly renegotiates ecclesiastical authority as she actively advances reform within the Carmelite order. Through life-writing and scriptural exegesis, Teresa cultivates a disciplined appetite for knowledge: an appetite that outwardly conforms to, yet quietly subverts, doctrinal anxieties surrounding women’s intellectual desires. Her use of curiosidad moves fluidly between sacred and secular registers—sometimes connoting superficial fascination, at other times signaling a deeper, interior restlessness. Resisting reductive interpretation, Teresa reveals a sophisticated and self-aware engagement with a disposition both morally ambiguous and intellectually generative. The same culture that once feared her intellect would ultimately aestheticize it. After her death, Teresa’s relics were fragmented and displayed in Philip II’s Wunderkammer, transforming her once-condemned curiosidad into curiositas, an imperial collectible. Reading Teresa alongside her posthumous interpreters—Fray Luis de León and Miguel de Cervantes—this essay explores how her radical epistemological ambition reverberated through Spanish intellectual culture. Spanning this cultural arc—from sin to spectacle, from forbidden desire to sanctified display—Teresa emerges as a masterful theorist and activist reformer of spiritual authority. In these expansive roles, she reveals the immense and often contradictory power that curiosity wielded in the early modern world. Full article

Legislative documents are crucial to democratic societies, defining the legal framework for social life. In Brazil, legislative texts are particularly complex due to extensive technical jargon, intricate sentence structures, and frequent references to prior legislation. The country’s civil law tradition and multicultural context introduce further interpretative and linguistic challenges. Moreover, the study of Brazilian Portuguese legislative texts remains underexplored, lacking legal-specific models and datasets. To address these gaps, this work proposes a data-driven approach utilizing large language models (LLMs) to analyze these documents and extract knowledge graphs (KGs). A case study was conducted using 1869proposals from the Legislative Assembly of Rio Grande do Norte (ALRN), spanning January 2019 to April 2024. The Llama 3.2 3B Instruct model was employed to extract KGs representing entities and their relationships. The findings support the method’s effectiveness in producing coherent graphs faithful to the original content. Nevertheless, challenges remain in resolving entity ambiguity and achieving full relationship coverage. Additionally, readability analyses using metrics for Brazilian Portuguese revealed that ALRN proposals require superior reading skills due to their technical style. Ultimately, this study advances legal artificial intelligence by providing insights into Brazilian legislative texts and promoting transparency and accessibility through natural language processing techniques. Full article

The decommissioning and dismantling of nuclear research reactors can lead to a large amount of low- and intermediate-level radioactive waste. For repositories, the materials must be kept confined and safety must be ensured for extended time spans. Waste is encapsulated in concrete, which leads to alkaline conditions with pH values of 12 and higher. This can be advantageous for some radionuclides due to their precipitation at high pH. For other materials, such as reactive metals, however, it can be disadvantageous because it might foster their corrosion. The Studsvik R2 research reactor contained an AlMg3.5 alloy with a composition close to that of commercial Al5154 for its core internals and the reactor tank. Aluminum corrosion is known to start rapidly due to the formation of an oxidation layer, which later functions as natural protection for the surface. The corrosion can lead to pressure build-up through the accompanied production of hydrogen gas. This can lead to cracks in the concrete, which can be pathways for radioactive nuclides to migrate and must therefore be prevented. In this study, unirradiated rod-shaped samples were cut from the same material as the original reactor tank manufacture. They were embedded in concrete with elevated water–cement ratios of 0.7 compared to regular commercial concrete (ca. 0.45) to ensure water availability throughout all of the experiments. The sample containers were stored in pressure vessels with attached high-definition pressure gauges to read the hydrogen-induced pressure build-up. A second set of samples were exposed in simplified artificial cement–water to study similarities in corrosion characteristics between concrete and cement–water. Additionally, the samples were exposed to concrete and cement–water in free-standing sample containers for deconstructive examinations. In concrete, the corrosion rates started extremely high, with values of more than 10,000 µm/y, and slowed down to less than 500 µm/y after 2000 h, which resulted in visible channels inside the concrete. In the cement–water, the samples showed similar behavior after early fluctuations, most likely caused by the surface coverage of hydrogen bubbles. These trends were further supported by mass loss evaluations. Full article

Background/Objectives: Dyslexia, a learning disability affecting reading, has been extensively studied using eye movements. This study aimed to examine in the same design the effects of different psycholinguistic variables, i.e., grammatical category, lexical frequency, word length and orthographic consistency on eye movement patterns during reading in adults. Methods: We compared the eye movements of forty university students, twenty with and twenty without dyslexia while they read aloud a meaningful and a meaningless text in order to examine whether semantic context could enhance their reading strategy. Results: Dyslexic participants made more reading errors and had longer reading time particularly with the meaningless text, suggesting an increased reliance on the semantic context to enhance their reading strategy. They also made more progressive and regressive fixations while reading the two texts. Similar results were found when examining grammatical categories. These findings suggest a reduced visuo-attentional span and reliance on a serial decoding approach during reading, likely based on grapheme-to-phoneme conversion. Furthermore, in the whole text analysis, there was no difference in fixation duration between the groups. However, when examining word length, only the control group exhibited a distinction between longer and shorter words. No significant group differences emerged for word frequency. Importantly, multiple regression analyses revealed that orthographic consistency predicted fixation durations only in the control group, suggesting that dyslexic readers were less sensitive to phonological regularities—possibly due to underlying phonological deficits. Conclusions: These findings suggest the involvement of both phonological and visuo-attentional deficits in dyslexia. Combined remediation strategies may enhance dyslexic individuals’ performance in phonological and visuo-attentional tasks. Full article

The eri silkworm Samia cynthia ricini (S. ricini) is an economically and scientifically significant lepidopteran species, though its genomic resources have remained limited. Here, we present a chromosome-level genome assembly for S. ricini generated through integrated long-read, short-read, and Hi-C sequencing data. The final 456.16 Mb assembly spans 14 chromosomes, exhibiting 98.5% BUSCO completeness and a 48.51% repetitive content. Functional annotation of the 15,729 protein-coding genes against five major databases (NR, SwissProt, Pfam, GO, and KEGG) revealed a maximum annotation rate of 92.71%, demonstrating high gene set quality. Comparative genomics with B. mori uncovered conserved syntenic blocks interspersed with chromosomal fusion/fission events and inversions. We further identified 4.27 million SNPs, 1.02 million InDels, and 53,367 SVs, establishing the first comprehensive variation map for this species. These genomic variations provide a foundation for marker-assisted breeding programs and trait association studies. All the genomic resources and interactive visualization tools were integrated into the SilkMeta database. This study establishes S. ricini as a pivotal resource for comparative lepidopteran genomics and accelerates molecular breeding programs for this agriculturally valuable insect. Full article

Third-generation sequencing (TGS), also known as long-read sequencing, has become a promising tool in clinical and research laboratories because it delivers high-resolution results with unmatched throughput. Specialised immunohematology laboratories currently employ sequencing-based methods to characterise rare ABO blood group phenotypes that cannot be identified through serology and genotyping methods. However, routine clinical application of these methods remains elusive due to the absence of validated laboratory protocols and bioinformatics tools. In this study, we have developed and validated a TGS-based workflow for comprehensive determination of the clinically relevant ABO phenotypes from DNA isolated from buccal swabs or whole blood. The region spanning exons 2 to 7 of the ABO gene were amplified and sequenced on MinION 10.4.1 flow cells. Predicted ABO phenotypes were initially determined based on single-nucleotide variants at gDNA261 (rs8176719), gDNA796 (rs8176746), and gDNA803 (rs8176747). However, certain O subtypes lacked the distinguishing deletion (rs8176719) and instead exhibited variations in exon 7 at gDNA802 (rs41302905) and gDNA805, caused by gDNA804 (rs782782485), which differentiate them from A alleles sharing the same nucleotides at gDNA261, gDNA796, and gDNA803. These additional variants were added to the analysis pipeline to identify the additional subtypes. DNA sequence data were sufficient to distinguish between the four clinically relevant ABO blood group phenotypes based on five polymorphic positions. While high sequencing coverage allowed for higher resolution genetic analysis, as few as 20 reads are sufficient for determining the ABO genotype and predicted phenotype of an individual. Typing results generated by this pipeline showed remarkable concordance with both serological results and molecular typing results by an independent laboratory, indicating its accuracy and reliability. This study demonstrates a comprehensive characterisation of clinically relevant ABO blood genotypes and predicted phenotypes using TGS methods. The approach provided a scalable and precise method for routine ABO blood group screening and aided in the development of pioneering bioinformatics tools suitable for clinical and research application. Full article

Objective: This study aimed to elucidate the regulatory mechanism of an auxin amide hydrolase gene (IAA-Leucine Resistant1-like Hydrolase, RhILL1) in the petal pigmentation of rose (Rosa hybrida), providing theoretical insight into the hormonal regulation of flower coloration at the molecular level. Methods: Using petals at Stage 3 (S3) of the cut rose cultivar ‘Pink Floyd’ as experimental material, we cloned the rose auxin amide hydrolase gene RhILL1 and validated its function via virus-induced gene silencing (VIGS). The expression levels of anthocyanin biosynthetic genes, anthocyanin content, and auxin (IAA) levels were analyzed to assess the role of RhILL1 in petal pigmentation. Results: The full-length open reading frame (ORF) of RhILL1 was cloned, spanning 1326 bp and encoding a 441-amino-acid protein harboring two conserved domains, Peptidase_M20 and M20_dimer, characteristic of the ILL1 protein family. Functional characterization was performed using VIGS. Quantitative real-time PCR (qRT-PCR) revealed that RhILL1 expression progressively increased from the Green (G) stage to S3, correlating with intensified petal coloration. Silencing RhILL1 resulted in visibly lighter petals, the reduced expression of anthocyanin biosynthetic genes, and a significant decrease in endogenous indole-3-acetic acid (IAA) levels compared with controls. Moreover, exogenous application of 10 μM naphthaleneacetic acid (NAA) to petals significantly preserved petal pigmentation. Conclusion: These findings suggest that RhILL1 contributes to the development and maintenance of petal coloration in rose, likely by modulating IAA levels, thereby influencing the expression of anthocyanin biosynthesis-related genes. Full article

This study addresses the critical need for effective data fusion strategies in pest prediction for pitahaya (dragon fruit) cultivation in the Ecuadorian Amazon, where heterogeneous data sources—such as environmental sensors and chlorophyll measurements—offer complementary but fragmented insights. Current agricultural monitoring systems often fail to integrate these data streams, limiting early pest detection accuracy. To overcome this, we compared early and late fusion approaches using comprehensive experiments. Multidimensionality is a central challenge: the datasets span temporal (hourly sensor readings), spatial (plot-level chlorophyll samples), and spectral (chlorophyll reflectance) dimensions. We applied dimensionality reduction techniques—PCA, KPCA (linear, polynomial, RBF), t-SNE, and UMAP—to preserve relevant structure and enhance interpretability. Evaluation metrics included the proportion of information retained (score) and cluster separability (silhouette score). Our results demonstrate that early fusion yields superior integrated representations, with PCA and KPCA-linear achieving the highest scores (0.96 vs. 0.94), and KPCA-poly achieving the best cluster definition (silhouette: 0.32 vs. 0.31). Statistical validation using the Friedman test (${\chi }^2$ = 12.00, p = 0.02) and Nemenyi post hoc comparisons (p < 0.05) confirmed significant performance differences. KPCA-RBF performed poorly (score: 0.83; silhouette: 0.05), and although t-SNE and UMAP offered visual insights, they underperformed in clustering (silhouette < 0.12). These findings make three key contributions. First, early fusion better captures cross-domain interactions before dimensionality reduction, improving prediction robustness. Second, KPCA-poly offers an effective non-linear mapping suitable for tropical agroecosystem complexity. Third, our framework, when deployed in Joya de los Sachas, improved pest prediction accuracy by 12.60% over manual inspection, leading to more targeted pesticide use. This contributes to precision agriculture by providing low-cost, scalable strategies for smallholder farmers. Future work will explore hybrid fusion pipelines and sensor-agnostic models to extend generalizability. Full article