Search Results (65)

A comprehensive investigation of the chemical bonding, electronic structure, and spectroscopic properties of the lanarkite-type Pb₂SO₅ (PSO) structure was conducted, for the first time, using density functional theory simulations. Thus, different functionals, PBE, PBE0, PBESOL, PBESOL0, BLYP, WC1LYP, and B3LYP, were used, and their results were compared to predict their fundamental properties accurately. All DFT calculations were performed using a triple-zeta valence plus polarization basis set. Among all the DFT functionals, PBE0 showed the best agreement with the experimental and theoretical data available in the literature. Our results also reveal that the [PbO₅] clusters were formed with five Pb–O bond lengths, with values of 2.29, 2.35, 2.57, 2.60, and 2.79 Å. Meanwhile, the [SO₄] clusters exhibited uniform S–O bond lengths of 1.54 Å. Also, a complete topological analysis based on Bader’s Quantum Theory of Atoms in Molecules (QTAIM) was applied to identify atom–atom interactions in the covalent and non-covalent interactions of the PSO structure. Additionally, PSO has an indirect band gap energy of 4.83 eV and an effective mass ratio ($m_h^{*}$/$m_e^{*}$) of about 0.192 (PBE0) which may, in principle, indicate a low degree of recombination of electron–hole pairs in the lanarkite structure. This study represents the first comprehensive DFT investigation of Pb₂SO₅ reported in the literature, providing fundamental insights into its electronic and structural properties. Full article

We performed an extensive study on the most stable structures, the electronic properties, and the thermal stability of the 2D biphenylene sheet decorated with Li atoms. Our structural results show that the Li storage capacity of biphenylene is much higher than that recently reported, which increases the interest in this 2D material as a promising anode material for Li-ion batteries, although Li diffusion is not expected at room temperature. Moreover, we found striking phenomena that had not been detected yet, such as the formation of Li zigzag wires and metallic Li monolayers on the biphenylene sheet beyond a certain coverage threshold. In our calculations, we use high-level density-functional theory, quantum chemical topology analysis, and ab initio molecular dynamics simulations. In particular, the latter methodology allows for confirming the stability of the predicted Li-decorated biphenylene structures at room-temperature conditions. Full article

Three-dimensional topological insulators possess surface-conducting states in the bulk energy gap, which are topologically protected and can be well described as helical 2 + 1 Dirac fermions. The electromagnetic response is given by axion electrodynamics in the bulk, leading to a Maxwell–Chern–Simons theory at the boundary, which is the source of the Hall conductivity. In this paper, we extend the formulation of axion electrodynamics such that it captures higher-derivative corrections to the Hall conductivity. Using the underlying 2 + 1 quantum field theory at the boundary, we employ thermal field theory techniques to compute the vacuum polarization tensor at finite chemical potential in the zero-temperature limit. Applying the derivative expansion method, we obtain higher-order derivative corrections to the Chern–Simons term in 2 + 1 dimensions. To first order the corrections, we find that the Hall conductivity receives contributions proportional to ${\omega }^2$ and ${\mathbf{k}}^2$ from the higher-derivative Chern–Simons term. Finally, we discuss the electrodynamic consequences of these terms on the topological Faraday and Kerr rotations of light, as well as on the image monopole effect. Full article

We investigate the spontaneous emission of a quantum emitter (QE) placed near the twisted hyperbolic metasurfaces (HMTSs) made of graphene strips. We demonstrate that the spontaneous emission can be enhanced distinctly due to the existence of moiré hyperbolic plasmon polaritons (HPPs) supported by the twisted HMTSs. Moreover, the spontaneous emission decay rate can be efficiently modulated by the chemical potential of graphene, the thickness of the dielectric spacer, and the twist angle between two HMTSs. The maximum spontaneous emission is achieved when topological transition occurs. The spontaneous emission will be enhanced as the thickness of the dielectric spacer increases for most cases. In particular, the twisted HMTSs make it possible to flexibly modify the spontaneous emission through the external field. The findings in this work not only extend past studies of twisted photonic structures but also have important applications in optical sensing and integrated photonics. Full article

Palladium phthalocyanine (PdPc) and palladium phthalocyanine integrated with tin–zinc oxide (PdPc:SnZnO) were prepared using a simple chemical approach, and their structural and morphological properties were identified using X-ray diffraction, energy dispersive X-ray analysis, scanning electron microscopy, and transmission electron microscopy techniques. The PdPc:SnZnO nanohybrid revealed a polycrystalline structure combining n-type metal oxide SnZnO nanoparticles with p-type organic PdPc molecules. The surface morphology exhibited wrinkled nanofibers decorated with tiny spheres and had a large aspect ratio. The thin film revealed significant optical absorption within the ultraviolet and visible spectra, with narrow band gaps measured at 1.52 eV and 2.60 eV. The electronic characteristics of Al/n-Si/PdPc/Ag and Al/n-Si/PdPc:SnZnO/Ag Schottky diodes were investigated using the current–voltage dependence in both the dark conditions and under illumination. The photodiodes displayed non-ideal behavior with an ideality factor greater than unity. The hybrid diode showed considerably high rectification ratio of 899, quite a low potential barrier, substantial specific photodetectivity, and high enough quantum efficiency, found to be influenced by dopant atoms and the unique topological architecture of the nanohybrid. The capacitance/conductance–voltage dependence measurements revealed the influence of alternative current signals on trapped centers at the interface state, leading to an increase in charge carrier density. Full article

Cisplatin is still a first-line agent in cancer treatment due to its effectiveness. Despite the large body of research concerning this drug, the role of explicit water molecules in its mechanism remains uncertain. We addressed the addition of cisplatin with the nitrogenous DNA bases adenine and guanine, with an emphasis on the impact of explicit microsolvation on every step of the action pathway of this pharmaceutical. We used electronic structure calculations to explore the energetics of the key reactions of this mechanism. We also exploited state-of-the-art methods of wave function analyses, namely, the Quantum Theory of Atoms in Molecules and the Interacting Quantum Atoms partition, to explore the chemical bonding throughout such chemical reactions. Our results reveal that microsolvation significantly differently affects electronic and Gibbs free activation energies, as previously reported (F.P. Cossio et al. ChemPhysChem, 17, 3932, 2016). The changes in activation energies are consistent with Hammond’s postulate in terms of the changes in the chemical bonding scenario between reactants and transition states. Overall, we provide an in-depth description of the importance of the surrounding water molecules of cisplatin, which aids in understanding the mechanism of pharmaceuticals in the pursuit of more effective cancer treatments. Full article

Synthetic mimics of the active site of [FeFe]-hydrogenase enzymes are important in the context of catalytic hydrogen production for future energetic applications. Providing a detailed quantum chemical description of the catalytic center of such mimics contributes to a better understanding of their behavior in hydrogen production processes. In this work, the analysis of bonds in the butterfly [2Fe2S] core in a series of complexes based on recently synthesized [FeFe]-hydrogenase mimics has been carried out using a wide range of quantum chemical topological methods. This series includes hexacarbonyl diiron dithiolate-bridged complexes with the bridging ligand bearing a five-membered carbon ring functionalized with diverse groups. The quantum theory of atoms in molecules (QTAIM) and the electron localization function (ELF) provided detailed characteristics of Fe–Fe and Fe–S bonds in the [2Fe2S] core of the complexes. A relatively small amount of strongly delocalized electron charge is attributed to the Fe–Fe bond. It was established how the topological parameters of the Fe–Fe and Fe–S bonds are affected by the five-membered carbon ring and its functionalization in the bridging dithiolate ligand. Next, one of the first applications of the interacting quantum atoms (IQA) method to [FeFe]-hydrogenase mimics was presented. The pairwise interaction between the metal centers in the [2Fe2S] core turns out to be destabilizing in contrast to the Fe–S interactions responsible for the stabilization of the entire core. Full article

Understanding the physical and chemical processes at the interfaces of metals and topological insulators is crucial for the development of the next generation of topological quantum devices. Here, we report the discovery of robust superconductivity in Pd/Bi₂Se₃ bilayers fabricated by sputtering Pd on the surface of Bi₂Se₃. Through transmission electron microscopy measurements, we identify that the observed interfacial superconductivity originates from the diffusion of Pd into Bi₂Se₃. In the diffusion region, Pd chemically reacts with Bi₂Se₃ and forms a layer of PdBiSe, a known superconductor with a bulk transition temperature of 1.5 K. Our work provides a method for the introduction of superconductivity into Bi₂Se₃, laying the foundation for the development of sophisticated Bi₂Se₃-based topological devices. Full article

Quantum chemical topology addresses the study of the chemical structure by applying the tools of differential topology to scalar and vector fields obtained by quantum mechanics. Here, the magnetically induced isotropically averaged Lorentz force density was computed and topologically analyzed for 11 small molecules. Critical points (attractors, repellers, and saddles) were determined and trajectories connecting the attractors computed. It is shown that kinds and numbers of the critical points are to some extent transferable in similar molecules. CC bonds of different orders are endowed with critical points of different kinds close to their center. The sum of topological indices of the isolated critical points is influenced by the presence of repellers on the outer part of the molecules. Full article

The need to solvate and encapsulate hydro-sensitive molecules drives noticeable trends in the applications of cyclodextrins in the pharmaceutical industry, in foods, polymers, materials, and in agricultural science. Among them, β-cyclodextrin is one of the most used for the entrapment of phenolic acid compounds to mask the bitterness of wheat bran. In this regard, there is still a need for good data and especially for a robust predictive model that assesses the bitterness masking capabilities of β-cyclodextrin for various phenolic compounds. This study uses a dataset of 20 phenolic acids docked into the β-cyclodextrin cavity to generate three different binding constants. The data from the docking study were combined with topological, topographical, and quantum-chemical features from the ligands in a machine learning-based structure–activity relationship study. Three different models for each binding constant were computed using a combination of the genetic algorithm (GA) and multiple linear regression (MLR) approaches. The developed ML/QSAR models showed a very good performance, with high predictive ability and correlation coefficients of 0.969 and 0.984 for the training and test sets, respectively. The models revealed several factors responsible for binding with cyclodextrin, showing positive contributions toward the binding affinity values, including such features as the presence of six-membered rings in the molecule, branching, electronegativity values, and polar surface area. Full article

The synthesis of gold(III) and gold(I)–gold(III) complexes with phosphide bridges is still a matter that requires solutions for their marked instability, in spite of the affinity of this metal in both oxidation states for phosphorous donor ligands. In the course of our studies, we realized that the presence of perhalophenyl groups of the type pentafluorophenyl or 3,5-dichlorotrifluorophenyl in the complexes gives rise to an increase in their stability that eases their isolation and structural characterization. In this paper, we describe two new fully characterized neutral compounds of this type to extend the knowledge on this family of compounds, [{Au(C₆Cl₂F₃)₂}₂(µ-PPh₂)₂] (1) and [{Au(C₆Cl₂F₃)₂(µ-PPh₂)₂Au}₂] (2). In this work, we analyze the role of the perhalophenyl groups in the stability of these complexes by using quantum chemical topology methodologies, specifically employing an analysis of the non-covalent interactions (NCIs) in real space and evaluating the electrostatic potential surfaces (ESP). Our findings reveal the existence of appreciable π-stacking interactions among the perhalophenyl and phenyl groups in both compounds, significantly contributing to the stability of the systems. Full article

The interaction energies of two series of molecular balances (1-X with X = H, Me, OMe, NMe₂ and 2-Y with Y = H, CN, NO₂, OMe, NMe₂) designed to probe carbonyl…carbonyl interactions were analysed at the B3LYP/6-311++G(d,p)-D3 level of theory using the energy partitioning method of Interacting Quantum Atoms/Fragments (IQA/IQF). The partitioned energies are analysed by the Relative Energy Gradient (REG) method, which calculates the correlation between these energies and the total energy of a system, thereby explaining the role atoms have in the energetic behaviour of the total system. The traditional “back-of-the-envelope” open and closed conformations of molecular balances do not correspond to those of the lowest energy. Hence, more care needs to be taken when considering which geometries to use for comparison with the experiment. The REG-IQA method shows that the 1-H and 1-OMe balances behave differently to the 1-Me and 1-NMe₂ balances because the latter show more prominent electrostatics between carbonyl groups and undergoes a larger dihedral rotation due to the bulkiness of the functional groups. For the 2-Y balance, REG-IQA shows the same behaviour across the series as the 1-H and 1-OMe balances. From an atomistic point of view, the formation of the closed conformer is favoured by polarisation and charge-transfer effects on the amide bond across all balances and is counterbalanced by a de-pyramidalisation of the amide nitrogen. Moreover, focusing on the oxygen of the amide carbonyl and the α-carbon of the remaining carbonyl group, electrostatics have a major role in the formation of the closed conformer, which goes against the well-known n-π* interaction orbital overlap concept. However, REG-IQF shows that exchange–correlation energies overtake electrostatics for all the 2-Y balances when working with fragments around the carbonyl groups, while they act on par with electrostatics for the 1-OMe and 1-NMe₂. REG-IQF also shows that exchange–correlation energies in the 2-Y balance are correlated to the inductive electron-donating and -withdrawing trends on aromatic groups. We demonstrate that methods such as REG-IQA/IQF can help with the fine-tuning of molecular balances prior to the experiment and that the energies that govern the probed interactions are highly dependent on the atoms and functional groups involved. Full article

Over the last ten years, the discovery of topological materials has opened up new areas in condensed matter physics. These materials are noted for their distinctive electronic properties, unlike conventional insulators and metals. This discovery has not only spurred new research areas but also offered innovative approaches to electronic device design. A key aspect of these materials is now that transforming them into nanostructures enhances the presence of surface or edge states, which are the key components for their unique electronic properties. In this review, we focus on recent synthesis methods, including vapor–liquid–solid (VLS) growth, chemical vapor deposition (CVD), and chemical conversion techniques. Moreover, the scaling down of topological nanomaterials has revealed new electronic and magnetic properties due to quantum confinement. This review covers their synthesis methods and the outcomes of topological nanomaterials and applications, including quantum computing, spintronics, and interconnects. Finally, we address the materials and synthesis challenges that need to be resolved prior to the practical application of topological nanomaterials in advanced electronic devices. Full article

Thiadiazole (THD) derivatives are famous for their exceptional chemical properties and versatile biological activities. In this work, we report computational investigations of the structure, reactivity, and binding affinity of three 1,3,4-THD derivatives (THDs) toward the SARS-CoV-2 main protease (Mpro). Hirshfeld surface (HS) analyses are carried out in conjunction with topological calculations in the context of the quantum theory of atoms in molecules (QTAIM) and reduced density gradient (RDG) to unravel the nature and magnitude of noncovalent interactions that contribute to maintaining these THDs. The three approaches consistently indicate that the titled THDs are mainly stabilized by weak intramolecular H…H, C-H…π, C-H…N, and N-H..H interactions in their monomeric forms, while their dimers also exhibit intermolecular π…π stacking and T-shaped contacts. In addition, Hirshfeld atomic charges, frontier molecular orbitals (FMOs), Fukui functions, and molecular electrostatic potential (MEP) reveal that the pyrrolic H atom (ring F) and the imidazole N atom (ring E) are the preferred binding sites for nucleophilic and electrophilic attacks, respectively. Finally, docking and molecular dynamics simulations demonstrate the remarkable binding profile of THDs toward the Mpro, which can be related to potential inhibitory activity. Full article

In the present work, we report on a 3D MOF of {[Pb₅(μ₃-OH)(μ₃-NO₃)₃(μ₆-pmdc)₃]·H₂O}_n formula (pmdc = pyrimidine-4,6-dicarboxylate) synthesized by an oven-heated, solvent-free procedure. The large connectivity afforded by the three ligands in their coordination to lead(II) ions grows cubic building units characterized by a central Pb atom with an unusual coordination index of 12 and 6 pmdc ligands occupying the faces. These cubic units are linked to one another giving rise to a quite condensed structure that represents an unprecedented topology showing the (4·6²)₆(4³)₂(4⁵·6¹⁰)₃(4⁵·6⁸·8²)₆(4⁶·6⁹)₆(6¹²·8³) point symbol. The crystalline material has been characterized by routine physico-chemical techniques to confirm its purity, and its thermal behaviour has been also studied by thermogravimetric and thermodiffractometric analyses. The solid presents a greenish blue photoluminescent emission based on pmdc ligands, as revealed by time-dependent density-functional theory (TDDFT) calculations, which is substantially more intense than in the free H₂pmdc ligand according to its improved quantum yield. The emissive capacity of the material is further analysed according to decreasing temperature of the polycrystalline sample, finding that sizeable, long-lasting phosphorescence is present. Full article