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Keywords = pore pressure decoupling

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25 pages, 9545 KB  
Review
Cone Penetration Test (CPT) Assessment of Bio-Cemented Soils: Review of Current Progress, Limitations, and Future Prospects
by Marwan Naeem, Emran Alotaibi, Tadahiro Kishida, Mohamed G. Arab, Tae-Hyuk Kwon and George Mylonakis
Geotechnics 2026, 6(3), 71; https://doi.org/10.3390/geotechnics6030071 - 31 Jul 2026
Viewed by 290
Abstract
Microbially Induced Carbonate Precipitation (MICP) and Enzyme-Induced Carbonate Precipitation (EICP) have emerged as promising sustainable alternatives to conventional ground improvement techniques. This paper presents a focused review of Cone Penetration Test (CPT)-based assessment of bio-cemented soils, synthesizing findings from studies spanning laboratory column [...] Read more.
Microbially Induced Carbonate Precipitation (MICP) and Enzyme-Induced Carbonate Precipitation (EICP) have emerged as promising sustainable alternatives to conventional ground improvement techniques. This paper presents a focused review of Cone Penetration Test (CPT)-based assessment of bio-cemented soils, synthesizing findings from studies spanning laboratory column tests, centrifuge models, and field trials. The review examines how CPT measurements, including tip resistance (qc), sleeve friction (fs), and pore pressure response (u), reflect the cementation mechanisms, treatment heterogeneity, soil-type effects, and scale dependency characteristic of MICP and EICP treatments. Key findings indicate that MICP and EICP produce distinct CPT responses: MICP-treated sands generally show stronger cementation-related stiffness signatures and more persistent improvement, whereas EICP-treated soils more commonly exhibit sharper near-surface qc gains that may be more susceptible to reduction with time. However, long-term field CPT evidence for EICP durability remains limited. CPT interpretation is more uncertain in fine-grained and heterogeneous soils, where low permeability, preferential flow, localized cementation, and penetration-induced disturbance can produce irregular profiles that are difficult to interpret from qc alone. Fundamental limitations of conventional qc-based CPT interpretation in bio-cemented ground are identified, including its inability to decouple cementation effects from density, stress state, and environmental variability. Multi-sensor CPT platforms integrating shear-wave velocity probes, acoustic emission monitoring, and geochemical sensors are identified as the most promising pathway toward reliable characterization. Three priority developments are outlined: standardized CPT interpretation protocols with calibrated conversion functions for major soil types, validated multi-sensor platforms deployable under field conditions, and machine-learning tools for spatial treatment quality assessment. This review provides a structured CPT-based synthesis of bio-cemented ground and establishes an interpretive basis for future standardized assessment protocols in geotechnical practice. Full article
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24 pages, 6995 KB  
Article
Decoding the Geomechanical Memory of Deep Shales: Decoupling Extreme 3D Stress and Overpressure for Unconventional Engineering
by Gang Wang, Changyu Fan, Zhenliang Wang and Haijun Yang
Geosciences 2026, 16(7), 276; https://doi.org/10.3390/geosciences16070276 - 6 Jul 2026
Viewed by 425
Abstract
Predicting present-day pore pressure and 3D in situ stress in ultra-deep fold-thrust belts is severely hindered by the inadequacies of traditional 1D vertical compaction models, which fail to account for massive lateral tectonic compression and continuous elastoplastic yielding. To overcome this, a 3D [...] Read more.
Predicting present-day pore pressure and 3D in situ stress in ultra-deep fold-thrust belts is severely hindered by the inadequacies of traditional 1D vertical compaction models, which fail to account for massive lateral tectonic compression and continuous elastoplastic yielding. To overcome this, a 3D poro-elastoplastic analytical framework is developed based on the Modified Cam-Clay model to decode the irreversible “geomechanical memory” of deeply buried argillaceous rocks. Applied to the highly compressed Kelasu Thrust Belt, this method links volumetric strain with mean and deviatoric stresses in stress-invariant space to reconstruct the maximum paleo-pore pressure and 3D paleo-stress tensor during the Coulomb Failure Period (CFP). The quantitative decoupling reveals an extreme state of geopressure prior to macroscopic faulting (pore pressure ratio α = 0.85–0.89). Crucially, the mean stress surge is identified as the dominant driver, generating ~91% of the excess overpressure. Consequently, horizontal tectonic compression accounts for 80–90% of the total overpressure anomaly, fundamentally overturning the classical assumption that vertical undercompaction (10–20%) is the primary mechanism. Furthermore, it is demonstrated that during subsequent tectonic uplift, the heavily compacted, salt-capped mudstones follow an undrained unloading path; the reduction in lithostatic burden is almost entirely offset by fluid depressurization, maintaining a constant effective stress state. This physically decoupled framework provides a rigorous basis for optimizing pre-drill safe mud-weight windows, designing hydraulic fracturing in highly deviatoric stress regimes, and assessing caprock integrity for deep geo-energy storage. Full article
(This article belongs to the Section Geomechanics)
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28 pages, 16414 KB  
Article
Direct Prestack Inversion of the Formation Pressure Coefficient for Deepwater Overpressured Reservoirs
by Hao Chen, Handong Huang, Gang Cui, Jun Liao, Jiahui Peng and Yaning Wu
J. Mar. Sci. Eng. 2026, 14(12), 1138; https://doi.org/10.3390/jmse14121138 - 21 Jun 2026
Viewed by 283
Abstract
Accurate prediction of overpressured formations in deepwater is important for drilling safety and reservoir evaluation. However, conventional two-step inversion workflows are affected by cumulative errors and parameter crosstalk, which limits their ability to characterize the sharp pressure-transition interfaces at the top of overpressured [...] Read more.
Accurate prediction of overpressured formations in deepwater is important for drilling safety and reservoir evaluation. However, conventional two-step inversion workflows are affected by cumulative errors and parameter crosstalk, which limits their ability to characterize the sharp pressure-transition interfaces at the top of overpressured zones. In this study, we propose a direct prestack nonlinear inversion method for the formation pressure coefficient (λ), a dimensionless and drilling-relevant indicator of overpressure intensity. Unlike previous exact-Zoeppritz direct inversions that target effective stress or elastic moduli, here a single formation pressure coefficient drives the pressure-sensitive rock-physics chain—linking pore pressure, effective stress, and pore-space stiffness to the seismic response—thereby reducing the number of free inversion variables. This single-parameter mapping is then coupled with the exact Zoeppritz equation to build a nonlinear prestack forward operator, helping to reduce the parameter coupling and error propagation associated with conventional multiparameter inversion workflows. To describe the typical blocky structural features of overpressured strata, a nonconvex Lp-norm (0 < p < 1) regularization is introduced as a structural prior, and a decoupled optimization strategy combining the alternating direction method of multipliers (ADMM) and iteratively reweighted least squares (IRLS) is developed for a stable solution. In a single pseudo-well synthetic test, the proposed method achieved a higher correlation coefficient and lower root mean square error (RMSE) than the indirect workflow, indicating improved agreement with the reference formation-pressure-coefficient profile. Application to field seismic data from the Yinggehai Basin, South China Sea, shows that the method produces clearer pressure-transition boundaries and pressure-coefficient profiles more consistent with the available well constraints. These results suggest that, under the tested conditions, the proposed method can provide useful geophysical support for pressure prediction and the characterization of deepwater overpressured reservoirs. Full article
(This article belongs to the Special Issue Marine Well Logging and Reservoir Characterization)
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34 pages, 8380 KB  
Review
Advances and Challenges in Aerobic Granular Sludge Membrane Bioreactors for Treating Sulfamethoxazole in Wastewater
by Qingyu Zhang, Bingjie Yan, Xinhao Sun, Zhengda Lin, Lu Liu, Haijuan Guo and Fang Ma
Membranes 2026, 16(4), 139; https://doi.org/10.3390/membranes16040139 - 1 Apr 2026
Viewed by 2399
Abstract
Sulfamethoxazole (SMX) is one of the most frequently detected antibiotics in aquatic environments and is difficult to remove by conventional biological treatment because of its persistence, potential toxicity to microbial communities, and associated risk of antibiotic resistance selection. Aerobic granular sludge membrane bioreactors [...] Read more.
Sulfamethoxazole (SMX) is one of the most frequently detected antibiotics in aquatic environments and is difficult to remove by conventional biological treatment because of its persistence, potential toxicity to microbial communities, and associated risk of antibiotic resistance selection. Aerobic granular sludge membrane bioreactors (AGMBRs), which combine the compact and stratified structure of aerobic granular sludge with membrane-based solid–liquid separation, have emerged as a promising platform for SMX-contaminated wastewater treatment because they provide high biomass retention, decoupled sludge retention time (SRT) and hydraulic retention time (HRT), and stable effluent quality. This review systematically summarizes recent advances in AGMBRs for SMX removal, with emphasis on how operating parameters (e.g., dissolved oxygen, hydraulic retention time, organic loading rate, C/N ratio, and sludge retention time) and membrane-related factors (e.g., membrane flux, aeration-induced shear, membrane type, and pore size) affect treatment performance and process stability. The main SMX attenuation pathways in AGMBRs are discussed from three perspectives: sorption and partitioning within granules and extracellular polymeric substances (EPSs), microbial biodegradation and co-metabolism, and membrane retention that prolongs effective contact time and shapes microbial ecology. Particular attention is given to the dual role of EPS and soluble microbial products (SMPs), which contribute to granule stability and SMX tolerance but also accelerate membrane fouling through cake-layer formation, pore blocking, and transmembrane pressure increase. Current challenges include incomplete understanding of transformation products, ARG- and MGE-related risks, long-term fouling–biodegradation interactions, and the lack of pilot-scale validation. Future research should therefore focus on mechanism clarification, integrated control of removal and fouling, energy-efficient operation, and scale-up of AGMBRs for practical antibiotic wastewater treatment. Full article
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32 pages, 24996 KB  
Article
Reservoir Quality Evolution in the Permian Wargal Carbonate Ramp, Western Salt Range, Pakistan
by Bilal Ahmed, Huafeng Tang, Shahzad Bakht and Muhammad Yousuf Jat Baloch
J. Mar. Sci. Eng. 2026, 14(7), 652; https://doi.org/10.3390/jmse14070652 - 31 Mar 2026
Viewed by 524
Abstract
The Permian Wargal Formation of the western Salt Range preserves a shallow marine carbonate-ramp succession, in which heterogeneity reflects coupled depositional architecture, facies-selective diagenesis, and deformation-related structural compartmentalisation of the Wargal interval. This study integrates balanced restoration with stratigraphic logging, microfacies analysis, paragenetic [...] Read more.
The Permian Wargal Formation of the western Salt Range preserves a shallow marine carbonate-ramp succession, in which heterogeneity reflects coupled depositional architecture, facies-selective diagenesis, and deformation-related structural compartmentalisation of the Wargal interval. This study integrates balanced restoration with stratigraphic logging, microfacies analysis, paragenetic reconstruction, and quantitative pore-network topology to evaluate how stratigraphic packaging and diagenetic overprint govern connected pathway development within a structurally partitioned fold–thrust setting. Balanced restoration of a representative transect yields 1.1336 km of minimum tectonic shortening (18.7%) and indicates shortening shared between thrust slip and distributed folding, providing an admissible geometric framework for assessing compartmentalisation. The Wargal succession is ~130 m thick and organised into three carbonate packages bounded by laterally persistent argillaceous marker intervals (~21–23 m and ~98–105 m), with grain-supported shoal to shoal-margin facies dominating intervening units. Diagenesis is strongly facies-selective; grain-supported microfacies record progressive calcite cementation that occludes pore throats, whereas mud-supported facies retain microporosity but are preferentially modified by neomorphism, compaction, and pressure-solution fabrics. Image-based analysis of 20 thin-section fields of view shows that pore connectivity varies systematically among microfacies and that a connectivity-weighted index (Iconn) covaries more closely with skeleton-derived connectivity than with segmented areal porosity (ϕ2D=0.124–9.750%). The combined results quantify the decoupling between pore volume and connectivity and provide a basis for predicting reservoir-quality evolution from facies architecture, diagenetic sequence, and structural segmentation, with direct relevance to subsurface characterisation of marine carbonate successions in hydrocarbon systems. Full article
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27 pages, 20251 KB  
Article
Investigation of the Sealing and Mechanical Stability of Cap Rock for Offshore CO2 Sequestration in Saline Aquifers
by Jinsen Li, Jianye Chen, Jing Peng, Yueqiang Ma and Quan Gan
Energies 2025, 18(22), 6033; https://doi.org/10.3390/en18226033 - 19 Nov 2025
Cited by 4 | Viewed by 1211
Abstract
Offshore saline aquifer CO2 sequestration relies heavily on the sealing integrity and mechanical stability of mudstone caprocks, yet their responses to supercritical CO2 (scCO2) remain inadequately constrained for marine geological settings. Here, we integrate permeability measurements, scCO2 breakthrough [...] Read more.
Offshore saline aquifer CO2 sequestration relies heavily on the sealing integrity and mechanical stability of mudstone caprocks, yet their responses to supercritical CO2 (scCO2) remain inadequately constrained for marine geological settings. Here, we integrate permeability measurements, scCO2 breakthrough pressure tests, and uniaxial mechanical experiments on natural and reconstituted core samples from the Pearl River Mouth Basin to address this gap. Our results reveal extreme vertical permeability heterogeneity (spanning 10−6 to 10−1 mD) within Yuehai and Hanjiang Formation caprocks. Critically, permeability and scCO2 breakthrough pressure are decoupled: breakthrough pressure is controlled by maximum pore-throat radius, while breakthrough time depends on post-breakthrough pore network topology. ScCO2-brine-rock interactions induce pronounced geomechanical weakening, with uniaxial compressive strength decreasing by up to 71.7% and the elastic modulus reducing, while a substantial increase in Poisson’s ratio signifies a fundamental transition from brittle to ductile behavior. We have developed a comprehensive framework to delineate potential CO2 migration pathways. Hanjiang Formation Section 1 (represented by sample A3) exhibits exceptional sealing properties, characterized by ultra-low permeability (2.41 × 10−6 mD), high breakthrough pressure (>16 MPa), and extended breakthrough time (>30 min). These attributes suggest that CO2 injection into the target saline aquifer at depths between 1470 and 1500 m, situated beneath this interval, can be deemed secure with a high potential for effective long-term containment. These findings provide essential insights for optimizing offshore CO2 sequestration site selection and injection pressure management to ensure long-term containment security. Full article
(This article belongs to the Section B3: Carbon Emission and Utilization)
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21 pages, 2272 KB  
Article
Methane–Natural Clay Interfacial Interactions as Revealed by High-Pressure Magic Angle Spinning (MAS) Nuclear Magnetic Resonance (NMR) Spectroscopy
by Salim Ok, Julia M. Sheets, Susan A. Welch and David R. Cole
Fuels 2025, 6(1), 16; https://doi.org/10.3390/fuels6010016 - 18 Feb 2025
Viewed by 1744
Abstract
The current investigation aims to offer fundamental, molecular- to microscopic-level descriptions of methane gas inside natural source clay minerals. Texas montmorillonite (STx-1), Georgia kaolinite (KGa-2), and Ca2+-saturated Texas montmorillonite (Ca-STx-1, Ca-bentonite) were utilized as subsurface model clay minerals for elucidating nano-confinement [...] Read more.
The current investigation aims to offer fundamental, molecular- to microscopic-level descriptions of methane gas inside natural source clay minerals. Texas montmorillonite (STx-1), Georgia kaolinite (KGa-2), and Ca2+-saturated Texas montmorillonite (Ca-STx-1, Ca-bentonite) were utilized as subsurface model clay minerals for elucidating nano-confinement behaviors of 13C-labeled methane gas. High-pressure magic angle spinning (MAS) nuclear magnetic resonance (NMR) was used to describe the interactions between methane and the clays by varying temperature and pressure. Proton-decoupled 13C-NMR spectra were acquired at 28.2 bar at 307 K, 32.6 bar at 346 K, 56.4 bar at 307 K, 65.1 bar at 346 K, 112.7 bar at 307 K, and 130.3 bar at 346 K. In the pure state, no significant thermal effect on the behavior of methane was observed. However, there was a perceptible variation in the chemical shift position of confined methane in the mixtures with the clays up to 346 K. Conversely, the 13C-NMR chemical shift of methane altered by varying pressure in a pure state, and the mixtures with clays, attributed to the interaction of methane with the clay surfaces or the nanopore network of the clay–silica mixed phase. Pressure-induced shifts in methane peak positions were observed: 0.25 ppm (28.2–56.4 bar) and 0.47 ppm (56.4–112.3 bar) at 307 K. For methane in a montmorillonite mixture, shifts were 0.32 ppm for bulk-like methane and 0.20 ppm for confined methane under similar conditions. At 346 K, increasing pressure from 65.1 to 130.3 bar caused shifts exceeding 0.50 ppm, with bulk-like methane showing a 0.64 ppm shift and confined methane a 0.57 ppm shift. There was only one 13C-NMR methane peak in the mixture with either kaolinite (KGa-2) or Ca-bentonite with line broadening compared to that of pure methane. Still, two peaks were observed in the mixture with STx-1, explained by the imbibition and mobility of methane in the pore network. Full article
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14 pages, 8810 KB  
Article
Responses of Laterally Loaded Single Piles Subjected to Various Loading Rates in a Poroelastic Soil
by Meen-Wah Gui and Alex A. Alebachew
Appl. Sci. 2022, 12(2), 617; https://doi.org/10.3390/app12020617 - 10 Jan 2022
Cited by 9 | Viewed by 3430
Abstract
Groundwater table has an important role in soil–structure interaction problems. However, analysis of laterally loaded single piles has often been conducted by solely considering the mechanics of the soil skeleton or decoupling the interactive mechanics of the soil skeleton and the fluid flux; [...] Read more.
Groundwater table has an important role in soil–structure interaction problems. However, analysis of laterally loaded single piles has often been conducted by solely considering the mechanics of the soil skeleton or decoupling the interactive mechanics of the soil skeleton and the fluid flux; in other words, most analyses were performed without taking into consideration the coupling effect between the soil skeleton and the fluid flux. To improve our understanding of the hydromechanical coupling effect on laterally loaded single piles, a series of finite element study on laterally loaded single piles in saturated porous media was conducted. The effect of pile cap geometries, cap widths, cap embedment depths, and pile lengths, on the response of laterally loaded single piles was also studied. The loading condition of the pile was found to have a significant effect on the generation of excess pore-water pressure. The lateral displacement and bending moment computed at the maximum excess pore water pressure, which in turn, is equivalent to an undrained analysis, produced the minimum responses among all the other loading conditions. The effect of pile cap geometries was found to be much less significant than anticipated. Full article
(This article belongs to the Special Issue Recent Progress on Advanced Foundation Engineering)
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12 pages, 2047 KB  
Article
Analytical Solutions for the Radial Consolidation of Unsaturated Foundation with Prefabricated Vertical Drain Based on Fourier Series Expansion Theory
by Qiang Meng, Qianwei Xu, Xianmin Luo, Yang Chen and Tianyi Li
Appl. Sci. 2021, 11(19), 9285; https://doi.org/10.3390/app11199285 - 6 Oct 2021
Cited by 2 | Viewed by 2918
Abstract
This paper presents the analytical solution of the radial consolidation of a prefabricated vertical drain (PVD) foundation under the unsaturated condition. In the proposed modeling, air and water phases in the foundation are thought to dissipate horizontally toward to the drain, and the [...] Read more.
This paper presents the analytical solution of the radial consolidation of a prefabricated vertical drain (PVD) foundation under the unsaturated condition. In the proposed modeling, air and water phases in the foundation are thought to dissipate horizontally toward to the drain, and the smear effect, drain resistance and external time-dependent loading are fully considered. The analytical mathematical tools, namely the general integration method, Fourier series expansion method, decoupling method and the constant variation method, are utilized to solve the partial differential equations. Moreover, the current solutions are verified with existing solutions in the literature. Finally, a case study considering the ramp loading and exponential loading is conducted to investigate the consolidation patterns under various loading parameters. The results show that smear effect and drain resistance can significantly hinder the dissipation process of excess pore pressures, and different external loading types will lead to various dissipation characteristics (i.e., peak values). Full article
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14 pages, 4563 KB  
Article
One-Dimensional Consolidation of Multi-Layered Unsaturated Soil with Impeded Drainage Boundaries
by Suhua Zhou, Jiatao Kang, Chang Lv and Minghua Huang
Appl. Sci. 2021, 11(1), 133; https://doi.org/10.3390/app11010133 - 25 Dec 2020
Cited by 6 | Viewed by 2834
Abstract
In geotechnical engineering, the consolidation of unsaturated soil is a common issue of great interest. Considering the multi-layered property and impeded drainage boundary condition of the soil stratum in real engineering, this study aimed to develop a general semi-analytical solution for assessing the [...] Read more.
In geotechnical engineering, the consolidation of unsaturated soil is a common issue of great interest. Considering the multi-layered property and impeded drainage boundary condition of the soil stratum in real engineering, this study aimed to develop a general semi-analytical solution for assessing the one-dimensional (1D) consolidation behavior of multi-layered unsaturated soil that is subjected to a general impeded drainage boundary condition and a time-dependent loading. To achieve the final solution, the proposed consolidation system is firstly decoupled and solved in the Laplace domain. Then, the semi-analytical solutions for the excess pore-air pressure and excess pore-water pressures as well as the soil settlement are formulated. The Crump method is employed to provide their final results in the time domain. The correctness of the derived solutions was verified against the available analytical and numerical solutions, and excellent agreements were found for the two comparisons. Moreover, two studied examples are presented to illustrate the 1D consolidation behavior of multi-layered unsaturated soil and the influences stemming from the impeded drainage parameters are discussed. Full article
(This article belongs to the Special Issue Advances in Geotechnical Engineering Ⅱ)
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28 pages, 126741 KB  
Article
The MS 6.9, 1980 Irpinia Earthquake from the Basement to the Surface: A Review of Tectonic Geomorphology and Geophysical Constraints, and New Data on Postseismic Deformation
by Alessandra Ascione, Sergio Nardò and Stefano Mazzoli
Geosciences 2020, 10(12), 493; https://doi.org/10.3390/geosciences10120493 - 9 Dec 2020
Cited by 19 | Viewed by 6774
Abstract
The MS 6.9, 1980 Irpinia earthquake occurred in the southern Apennines, a fold and thrust belt that has been undergoing post-orogenic extension since ca. 400 kyr. The strongly anisotropic structure of fold and thrust belts like the Apennines, including late-orogenic low-angle normal [...] Read more.
The MS 6.9, 1980 Irpinia earthquake occurred in the southern Apennines, a fold and thrust belt that has been undergoing post-orogenic extension since ca. 400 kyr. The strongly anisotropic structure of fold and thrust belts like the Apennines, including late-orogenic low-angle normal faults and inherited Mesozoic extensional features besides gently dipping thrusts, result in a complex, overall layered architecture of the orogenic edifice. Effective decoupling between deep and shallow structural levels of this mountain belt is related to the strong rheological contrast produced by a fluid-saturated, shale-dominated mélange zone interposed between buried autochthonous carbonates—continuous with those exposed in the foreland to the east—and the allochthonous units. The presence of fluid reservoirs below the mélange zone is shown by a high VP/VS ratio—which is a proxy for densely fractured fluid-saturated crustal volumes—recorded by seismic tomography within the buried autochthonous carbonates and the top part of the underlying basement. These crustal volumes, in which background seismicity is remarkably concentrated, are fed by fluids migrating along the major active faults. High pore fluid pressures, decreasing the yield stress, are recorded by low stress-drop values associated with the earthquakes. On the other hand, the mountain belt is characterized by substantial gas flow to the surface, recorded as both distributed soil gas emissions and vigorous gas vents. The accumulation of CO2-brine within a reservoir located at hypocentral depths beneath the Irpinia region is not only interpreted to control a multiyear cyclic behavior of microseismicity, but could also play a role in ground motions detected by space-based geodetic measurements in the postseismic period. The analysis carried out in this study of persistent scatterer interferometry synthetic aperture radar (PS-InSAR) data, covering a timespan ranging from 12 to 30 years after the 1980 mainshock, points out that ground deformation has affected the Irpinia earthquake epicentral area in the last decades. These ground motions could be a result of postseismic afterslip, which is well known to occur over years or even decades after a large mainshock such as the 23 November 1980, MS 6.9 earthquake due to cycles of CO2-brine accumulation at depth and its subsequent release by Mw ≥ 3.5 earthquakes, or most likely by a combination of both. Postseismic afterslip controls geomorphology, topography, and surface deformation in seismically active areas such as that of the present study, characterized by ~M 7 earthquakes. Yet, this process has been largely overlooked in the case of the 1980 Irpinia earthquake, and one of the main aims of this study is to fill such the substantial gap of knowledge for the epicentral area of some of the most destructive earthquakes that have ever occurred in Italy. Full article
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25 pages, 1553 KB  
Review
Theoretical Modeling of Polymer Translocation: From the Electrohydrodynamics of Short Polymers to the Fluctuating Long Polymers
by Sahin Buyukdagli, Jalal Sarabadani and Tapio Ala-Nissila
Polymers 2019, 11(1), 118; https://doi.org/10.3390/polym11010118 - 11 Jan 2019
Cited by 24 | Viewed by 5608
Abstract
The theoretical formulation of driven polymer translocation through nanopores is complicated by the combination of the pore electrohydrodynamics and the nonequilibrium polymer dynamics originating from the conformational polymer fluctuations. In this review, we discuss the modeling of polymer translocation in the distinct regimes [...] Read more.
The theoretical formulation of driven polymer translocation through nanopores is complicated by the combination of the pore electrohydrodynamics and the nonequilibrium polymer dynamics originating from the conformational polymer fluctuations. In this review, we discuss the modeling of polymer translocation in the distinct regimes of short and long polymers where these two effects decouple. For the case of short polymers where polymer fluctuations are negligible, we present a stiff polymer model including the details of the electrohydrodynamic forces on the translocating molecule. We first show that the electrohydrodynamic theory can accurately characterize the hydrostatic pressure dependence of the polymer translocation velocity and time in pressure-voltage-driven polymer trapping experiments. Then, we discuss the electrostatic correlation mechanisms responsible for the experimentally observed DNA mobility inversion by added multivalent cations in solid-state pores, and the rapid growth of polymer capture rates by added monovalent salt in α -Hemolysin pores. In the opposite regime of long polymers where polymer fluctuations prevail, we review the iso-flux tension propagation (IFTP) theory, which can characterize the translocation dynamics at the level of single segments. The IFTP theory is valid for a variety of polymer translocation and pulling scenarios. We discuss the predictions of the theory for fully flexible and rodlike pore-driven and end-pulled translocation scenarios, where exact analytic results can be derived for the scaling of the translocation time with chain length and driving force. Full article
(This article belongs to the Special Issue Polymer in Confinement)
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