Search Results (379)

Global warming and soil salinization pose significant challenges to modern plant cultivation. Background/Objectives: Polyploidization of whole-genome duplication is an important evolutionary strategy, enhancing plant adaptation to environmental stress. This study investigates the impact of heat and salt stress on photosynthesis and proteomic changes in a polyploid series of Arabidopsis thaliana (diploid, triploid, and tetraploid). Methods: Two-month-old plants were exposed to heat stress (45 °C for 3 h) or salt stress (300 mM NaCl for 24 or 48 h). Stress effects were assessed via photosystem II maximum efficiency (F_v/F_m), the performance index (PI_ABS), and proline content. Proteomic responses were analyzed using 2D SDS-PAGE and mass spectrometry. Results: Our findings revealed that polyploid plants maintained higher photosynthetic performance than diploids under both heat and salt stress. While proline accumulation under heat stress was comparable across all ploidy levels, polyploids accumulated more proline under salt stress, indicating enhanced salinity tolerance. Proteomic analysis showed differential protein expression among diploid and polyploid plants in response to stress. Several differentially expressed proteins had functions involved in photosynthesis and stress response pathways. These findings confirm prior evidence of tetraploid Arabidopsis resilience to salinity and extend this observation to heat stress. Moreover, triploids also demonstrated increased stress tolerance, suggesting adaptive advantages of this intermediate ploidy level as well. Conclusions: Differential expression patterns among ploidy levels may reflect varied energy-saving strategies and alterations in protein structure and function. This work highlights the importance of polyploidy in improving plant stress resilience, offering insights for breeding stress-tolerant crops in a changing climate. Full article

The majority of Aeromonas strains are opportunistic pathogens for both humans and animals, causing a variety of diseases and posing a considerable risk to their health. In the current study, triploid cyprinid fish (TCF) were infected with a novel pathogenic Aeromonas sp. AS1-4 for pathological analysis. TCFs receiving Aeromonas sp. AS1-4 challenge exhibited oxidative damage in the liver and spleen, along with significant changes in immune-related gene expressions. Metabolomics assay indicated that strain AS1-4 challenge may exhibit a significant impact on metabolic processes of amino acids, with methylsuccinic acid (MSA) identified as vital biomarker. Following that, three potential probiotics designated Enterobacter strains fkY27-2, fkY84-1 and fkY84-4 were isolated from the intestine of TCFs, displaying excellent safety characteristics. In addition, intestinal Enterobacter strains exhibited multiple probiotic traits, including high degrees of hydrophobic activity, aggregation performance, biofilm-forming activity (BFA) and nutrient decomposing ability. Moreover, these probiotic isolates markedly coaggregated with Aeromonas sp. AS1-4 and Edwardsiella tarda 1l-4 and then suppressed their pathogenic biofilm-forming abilities, along with possessing robust antioxidant potential against various free radicals. These findings may provide valuable insights into metabolic response in fish post infection and health management in aquaculture. Full article

Alternative splicing (AS) is a crucial post-transcriptional regulatory mechanism that enhances transcriptomic and proteomic diversity by generating multiple mRNA isoforms from a single gene. In plants, AS plays a central role in modulating growth, development, and stress responses. We summarize the prevalence and functional roles of AS in plant development and stress adaptation, highlighting mechanisms that link AS to hormone signaling, RNA surveillance, and epigenetic regulation. Polyploid crops, with their duplicated genomes, exhibit expanded AS complexity, contributing to phenotypic plasticity, stress tolerance, and adaptive evolution. Thus, this review synthesizes current knowledge on AS in plants, with a focus on three economically important polyploid crops—Brassica napus, Gossypium hirsutum, and Triticum aestivum. We also discuss how subgenome interactions shape diversity in polyploids and influence trait variation. Despite significant advances enabled by high-throughput sequencing, mechanistic studies that directly link specific AS events to phenotypic outcomes remain limited. Understanding how polyploidy reprograms AS and how isoform variation contributes to stress adaptation will be critical for harnessing AS in crop improvement. Full article

Napier grass (Cenchrus purpureus Schumach) is an important forage crop and livestock feed. However, its yield and quality in Kenya are often limited by Napier grass headsmut and stunt disease. Napier grass genetic improvements through mutation breeding and selection could avail cultivars with increased forage. This study investigated the response of embryogenic calli to different levels of colchicine in inducing polyploidy in the two germplasms of Napier grass; South africa and Bana grass. The experiments were carried out as a factorial experiment in a completely randomized design (CRD). The colchicine concentrations used were 0, 0.05, 0.1, and 0.2%, and the exposure durations were 24, 48, and 72 h. During the shoot regeneration stage, culturing explants on an MS medium (Murashige and Skoog) supplemented with 0.2 mg L⁻¹ Benzyl Adenine (BAP), 0.1 mg L⁻¹ dichlorophenoxyacetic acid (2, 4-D), and 0.1 mg L⁻¹ indole-3-butyric acid (IBA) was more suitable for shoot regeneration. Chromosome doubling was confirmed by genomic DNA and the stomata size and number. Culturing explants on an MS medium supplemented with 1 mg L⁻¹ IBA, 1 mg L⁻¹ 2, 4-D, and 0.5 mg L⁻¹ BAP was more suitable in inducing embryogenic calli in both genotypes. Polyploidy results revealed that a 0.1% concentration of colchicine with two days of treatment established the maximum number of octoploid plantlets induced in vitro, while a 0.2% concentration was very toxic. The stomata size and number of derived octoploid plantlets were bigger with a lower density, a shorter plant height, and a smaller stem diameter, and despite being the first to produce tillers, they were significantly higher than their progenitors. Induced mutants also had a significantly higher number of chromosomes and showed different band patterns and distances during gel electrophoresis. However, we recommend the use of flow cytometry to confirm the ploidy level. The superior mutant plantlets can be selected and recommended for characterization across representative agro-ecologies for large-scale production and used in Cenchrus purpureus breeding programs in Kenya and its environments. Full article

A plant breeding program needs helpful markers, especially morphological ones, which can allow breeders to dispense with other markers, including cytological traits and flow cytometry. These markers can assist plant breeders in distinguishing diploid and tetraploid plants during the seedling stage. Therefore, the present study aimed to investigate and validate effective methodologies for the early identification of artificially induced polyploids in black cumin. Thus, we established an extensional program for black cumin breeding including producing seeds, active compounds, and flowers as ornamental plants. Field experiments on tetraploids and diploids were carried out to evaluate the morphological and yield traits of both plants. Also, some cytological studies and Gas Chromatography (GC) analysis were conducted to achieve these goals. The results showed the possibility of realizing diploid and tetraploid plants in early growing black seeds in the field (mainly after the first cotyledon leaves). This crucial outcome can support plant breeders in identifying polyploidy during the seedling stage without referring to biochemical markers, flow cytometry, and cytological traits. All morphological and yield-related traits were superior in diploid plants compared to tetraploids. The results showed that diploid and tetraploid plants exhibited plant heights of 116 cm and 95 cm, numbers of secondary branches of 112 and 22, numbers of flowers of 111.7 and 24.75, and shoot fresh weights of 610 g and 147.5 g, respectively. Furthermore, the number of seeds per capsule, seed yield per plant, and oil percentage in diploids were 97.5 seeds, 24 g, and 22.94%, compared with 35.25 seeds, 4.62 g, and 17.76% in tetraploids, respectively. This work used the cotyledon leaf shape as a morphological marker to distinguish the tetraploid and diploid plants, as diploids are typically taller with pointed cotyledons, whereas tetraploids are shorter with rounded cotyledon tips. This study will create great opportunities for plant breeders to save time and costs during their programs. Further studies on such suggested black cumin breeding programs are needed on diploids, triploids, and tetraploids. Full article

Plant architecture is a crucial agronomic trait significantly impacting soybean (Glycine max) yield. Traditional breeding has made some progress in optimizing soybean architecture, but it is limited in precision and efficiency. The Clustered Regularly Interspaced Short Palindromic Repeats and CRISPR-associated protein (CRISPR/Cas) system, a revolutionary gene-editing technology, provides unprecedented opportunities for plant genetic improvement. This review outlines CRISPR’s development and applications in crop improvement, focusing specifically on progress regulating soybean architecture traits affecting yield, such as node number, internode length, branching, and leaf morphology. It also discusses the technical challenges for CRISPR technology in enhancing soybean architecture, including that the regulatory network of soybean plant architecture is complex and the development of multi-omics platforms helps gene mining. The application of CRISPR enables precise the regulation of gene expression through promoter editing. Meanwhile, it is also faced with technical challenges such as the editing of homologous genes caused by genome polyploidy, the efficiency of editing tools and off-target effects, and low transformation efficiency. New delivery systems such as virus-induced genome editing bring hope for solving some of these problems. The review emphasizes the great potential of CRISPR technology in breeding next-generation soybean varieties with optimized architecture to boost yield potential. Full article

Myriophyllum heterophyllum is an aquatic macrophyte that is invasive to the northeastern United States and several western European countries. Spreading by vegetative clonal propagation, especially fragmentation, extensive resources are devoted to limiting its growth and spread; however, genetic assessments are not typically included in management strategies. Reduction in genetic (clonal) diversity should accompany biomass reduction, yet without genetic assessment, the efficacy of plant removal remains unclear. This paper is the first to describe a microsatellite marker library and its use in the characterization of Myriophyllum heterophyllum. Eighty-seven tissue samples were collected across the invasive distribution of Myriophyllum heterophyllum in Maine, USA. DNA was extracted, and PCR amplification was employed to screen 13 published microsatellites. Sequencing of the amplified loci was performed to characterize repeat motifs and confirm primer binding sites. Fragment sizing of PCR amplicons was employed to determine microsatellite lengths across the 87 samples. A total of 7 of the 13 tested markers were amplified, with six of those seven found to be variable. Polyploidy was evident from allelic diversity within individuals, although precise ploidy could not be determined. Observed heterozygosity ranged from 0.16 to 1.00 across variable markers. This seven-marker library was effective in characterizing the genetic diversity of both newly discovered (<5 years) and older (>50 years) infestations and is expected to be suitable for assessment of genetic diversity in populations within the native range of M. heterophyllum. The marker library also shows potential for use in several other Myriophyllum species. Full article

Polyploidisation is a very common phenomenon in the plant kingdom and plays a key role in plant evolution and breeding. It promotes speciation and the extension of biodiversity. It is estimated that approximately 47% of flowering plant species are polyploids, derived from two or more diploid ancestral species. In natural populations, the predominant methods of whole-genome multiplication are somatic cell polyploidisation, meiotic cell polyploidisation, or endoreduplication. The formation and maintenance of polyploidy is accompanied by a series of epigenetic and gene expression changes, leading to alterations in the structural, physiological, and biochemical characteristics of polyploids relative to diploids. This article provides information on the mechanisms of formation of natural and synthetic polyploids. It presents a number of examples of the effects of polyploidisation on the composition and content of secondary metabolites of polyploids, providing evidence of the importance of the phenomenon in plant adaptation to the environment, improvement of wild species, and crops. It aims to gather and systematise knowledge on the effects of polyploidisation on plant physiological traits, including stomatal conductance (Gs), transpiration rate (Tr), light saturation point (LSP), as well as the most important photosynthetic parameters determining biomass accumulation. The text also presents the latest findings on the adaptation of polyploids to biotic and abiotic stresses and explains the basic mechanisms of epigenetic changes determining resistance to selected stress factors. Full article

Diploid Vaccinium fuscatum is a wild blueberry species with a low chilling requirement, an evergreen growth habit, and soil adaptability to southeast US growing regions. Regardless of its potential to improve the abiotic and biotic resilience of cultivated blueberries, this species has rarely been used for blueberry breeding. One hurdle is the ploidy barrier between diploid V. fuscatum and tetraploid cultivated highbush blueberries. To overcome the ploidy barrier, vegetative shoots micro-propagated from one genotype of V. fuscatum, selected because it grew vigorously in vitro and two southern highbush cultivars, ‘Emerald’ and ‘Rebel,’ were treated with colchicine. While shoot regeneration was severely repressed in ‘Emerald’ and ‘Rebel,’ shoot production from the V. fuscatum clone was not compromised at either 500 µM or 5000 µM colchicine concentrations. Due to the high number of shoots produced in vitro via the V. fuscatum clone shoots of this clone that had an enlarged stem diameter in vitro were subjected to flow cytometer analysis to screen for induced polyploidy. Sixteen synthetic tetraploid V. fuscatum, one synthetic octoploid ‘Emerald,’ and three synthetic octoploid ‘Rebel’ were identified. Growth rates of the polyploid-induced mutants were reduced compared to their respective wildtype controls. The leaf width and length of synthetic tetraploid V. fuscatum and synthetic octoploid ‘Emerald’ was increased compared to the wildtypes, whereas the leaf width and length of synthetic octoploid ‘Rebel’ were reduced compared to the wildtype controls. Significant increases in stem thickness and stomata guard cell length were found in the polyploidy-induced mutant lines compared to the wildtypes. In the meantime, stomata density was reduced in the mutant lines. These morphological changes may improve drought tolerance and photosynthesis in these mutant lines. Synthetic tetraploid V. fuscatum can be used for interspecific hybridization with highbush blueberries to expand the genetic base of cultivated blueberries. Full article

Autumn fern, Dryopteris erythrosora, is the most marketed temperate fern in the world. The rapid increase and spread of this recently naturalized fern in North America was determined and mapped using 76 herbarium specimen records and 2553 Research Grade iNaturalist posts. In 2008, it was recorded in two states, but by 2025, it was found in 25 states in the eastern United States and Ontario, Canada. At the end of 2017, there had been only 23 iNaturalist posts, but this grew to 511 by the end of 2020 and 2553 by May 2025. The great increase in the number of iNaturalist posts is thought to be due to the real geographic spread and an actual increase in the abundance of the fern, as well as recognition of the fern by iNaturalists, and the increase in the number of iNaturalists. The spread and great increase are probably related to the high level of marketing, which introduces plants to the environment, and to biological characteristics of the fern, including apogamy and polyploidy, and possibly natural enemy release, which allows it to flourish in new environments and to displace native plants. This novel study demonstrated citizen science’s (iNaturalist’s) great value in detecting the naturalization and spread of alien plants. Full article

Polyploidy in plants can enhance stress resistance and secondary metabolite production, offering potential benefits for Clausena lansium (L.) Skeel, a medicinally valuable species. However, systematic studies of polyploidy-induced morphological, anatomical, and metabolic changes in this species are lacking. This study aimed to induce and characterize polyploid C. lansium lines, assess ploidy-dependent variations, and evaluate their impact on bioactive metabolite accumulation. Three cultivars were hybridized, treated with colchicine, and bred, yielding 13 stable polyploid lines confirmed by flow cytometry and chromosome counting. The polyploids exhibited distinct traits, including larger pollen grains, altered leaf margins, increased leaflet numbers, enlarged guard cells with reduced stomatal density, and thicker leaf tissues. Metabolomic analysis revealed that tetraploids accumulated significantly higher levels of flavonoids, alkaloids, and phenolic acids compared to diploids, while triploids showed moderate increases. These findings demonstrate that polyploidization, particularly tetraploidy, enhances C. lansium’s medicinal potential by boosting pharmacologically active compounds. The study expands germplasm resources and supports the development of high-quality cultivars for pharmaceutical applications. Full article

Nearly four decades have passed since fluorescence in situ hybridisation was first applied in plants to support molecular cytogenetic analyses across a wide range of species. Subsequent advances in DNA sequencing, bioinformatic analysis, and microscopy, together with the immunolocalisation of various nuclear components, have provided unprecedented insights into the cytomolecular organisation of the nuclear genome in both model and non-model plants, with crop species being perhaps the most significant. The ready availability of sequenced genomes is now facilitating the application of state-of-the-art cytomolecular techniques across diverse plant species. However, these same advances in genomics also pose a challenge to the future of plant molecular cytogenetics, as DNA sequence analysis is increasingly perceived as offering comparable insights into genome organisation. This perception persists despite the continued relevance of FISH-based approaches for the physical anchoring of genome assemblies to chromosomes. Furthermore, cytogenetic approaches cannot currently rival purely genomic methods in terms of throughput, standardisation, and automation. This review highlights the latest key topics in plant cytomolecular research, with particular emphasis on chromosome identification and karyotype evolution, chromatin and interphase nuclear organisation, chromosome structure, hybridisation and polyploidy, and cytogenetics-assisted crop improvement. In doing so, it underscores the distinctive contributions that cytogenetic techniques continue to offer in genomic research. Additionally, we critically assess future directions and emerging opportunities in the field, including those related to CRISPR/Cas-based live-cell imaging and chromosome engineering, as well as AI-assisted image analysis and karyotyping. Full article

Colchicine, a strong antimitotic drug produced by the crocus Colchicum autumnale, induces polyploidy by interfering with spindle formation during mitosis, making it a crucial tool in plant breeding. In this review, we give a comprehensive overview of the function of colchicine in plant enhancement, emphasizing its modes of action, application techniques, and effects on phytochemistry, physiology, and plant morphology. A wide variety of plant species, especially medicinal plants, have been studied in this context, utilizing in vitro, ex vitro, and in vivo methods for applying colchicine. In addition, we discuss the safety and effectiveness of colchicine in comparison to other polyploidy-inducing drugs, including oryzalin, trifluralin, and mutagens such as ethyl methanesulfonate and methyl methanesulfonate. Furthermore, the effects of colchicine on genetic stability and secondary metabolite production are discussed, with a focus on its usefulness in boosting the medicinal and economic potential of the target species. This synthesis highlights the ongoing use of colchicine in plant breeding and provides useful information and suggestions for future advancements in crop development via induced polyploidy. Full article

KNOX genes play crucial roles in cell-fate determination and body plan specification during early embryogenesis. However, the specific gene structure and functional differentiation of KNOXs in Brassica napus is still unclear. We investigated KNOX genes in Brassica rapa (B. rapa), Brassica oleracea (B. oleracea), and Brassica napus (B. napus), which are polyploidy models with genome triplication after Arabidopsis-Brassiceae divergence. In total, 15, 14, and 32 KNOX genes were identified in B. rapa, B. oleracea, and B. napus, respectively. Phylogenetic analysis classified BnKNOXs (B. napus) into three classes with conserved domain organization. Synteny analysis indicated that BnKNOXs family expansion during allopolyploidization was mainly due to whole-gene and segmental duplications. Cis-element, gene structure, and expression pattern analyses showed high conservation within the same group. RNA-seq and qRT-PCR results divided BnKNOXs into three classes with distinct expression patterns: Class I exhibited moderate and specific expression in buds and inflorescence tips; Class III showed specific low expression in seeds and stamens; while the second class showed expression in most tissues. Sub-cellular localization results showed that the three candidate genes from the three classes exhibited distinct subcellular localizations, with BnSTM-C and BnKNAT3a-A predominantly in the nucleus and BnKNATM1-A in the cytoplasm indicating different expression patterns. Collectively, these findings provide a foundation for further functional studies of BnKNOX genes in B. napus. Full article

Background: The treatment landscape for multiple myeloma (MM) has significantly evolved in recent decades with novel therapies like proteasome inhibitors, immunomodulatory drugs and monoclonal antibodies. However, MM remains incurable, necessitating new pharmacological strategies. Mitotic kinases, such as Aurora proteins, have emerged as potential targets. Selective inhibitors of Aurora A and B,- alisertib (MLN8237) and barasertib (AZD1152), respectively, have shown anti-myeloma activity in preclinical studies, with alisertib demonstrating modest efficacy in early clinical trials. Methods and Results: This study investigated the mechanisms of action of alisertib and barasertib and their combination with antitumor agents in a panel of five MM cells lines. Both drugs induced cell cycle arrest phase and abnormal nuclear morphologies. Alisertib caused prolonged mitotic arrest, whereas barasertib induced transient arrest, both resulting in the activation of mitotic catastrophe. These findings revealed three potential outcomes: cell death, senescence, or polyploidy. High mitochondrial reactive oxygen species (mROS) were identified as possible drivers of cell death. Caspase inhibition reduced caspase-3 activation but did not prevent cell death. Interestingly, alisertib at low doses remained toxic to Bax/Bak^DKO cells, although mitochondrial potential disruption and cytochrome c release were observed. Sequential combinations of high-dose Aurora kinase inhibitors with BH3-mimetics, and in specific cases with panobinostat, showed a synergistic effect. Conversely, the simultaneous combination of alisertib and barasertib showed mostly antagonistic effects. Conclusions: Alisertib and barasertib emerge as potential in vitro candidates against MM, although further studies are needed to validate their efficacy and to find the best combinations with other molecules. Full article