Sign in to use this feature.

Years

Between: -

Subjects

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Journals

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Article Types

Countries / Regions

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Search Results (345)

Search Parameters:
Keywords = poly(amino acids)

Order results
Result details
Results per page
Select all
Export citation of selected articles as:
16 pages, 3363 KB  
Review
Peptide Identity of Electrochemically Deposited Polyarginine: A Critical Assessment
by Ivan Švancara and Milan Sýs
Chemosensors 2026, 14(1), 27; https://doi.org/10.3390/chemosensors14010027 - 16 Jan 2026
Viewed by 234
Abstract
This review examines the feasibility of electrochemical synthesis of poly-L-arginine (PArg) using repetitive cyclic voltammetry in neutral aqueous phosphate-buffered saline. Previous studies on electrochemical deposition of PArg onto different carbonaceous electrode materials are discussed with respect to the already reported mechanistic models. Some [...] Read more.
This review examines the feasibility of electrochemical synthesis of poly-L-arginine (PArg) using repetitive cyclic voltammetry in neutral aqueous phosphate-buffered saline. Previous studies on electrochemical deposition of PArg onto different carbonaceous electrode materials are discussed with respect to the already reported mechanistic models. Some controversial interpretations are of interest, predominantly the formation of peptide bonds during the electropolymerisation of L-arginine. Several alternative anodic pathways are considered via the possibilities and limitations of ways of attaching L-arginine molecules to the electrode surface. Furthermore, the role of oxygen-containing surface groups is discussed, as this aspect has been largely overlooked in the context of L-arginine deposition, despite the O-terminating character of the electrode surface and its effect on the reactivity of the nucleophilic guanidine group in L-arginine. Also, the application of extremely high potentials around +2 V vs. Ag/AgCl/3 mol L−1 KCl is considered, as it can lead to the generation of reactive oxygen species that may interfere with or even govern the entire deposition process. Thus, the absence of such considerations may raise doubts about the peptide nature of the electrochemically assisted polymerisation of this basic amino acid. Finally, it seems that the identity of the electrochemically synthesised PArg does not correspond to that of this polymer prepared by conventional methods, such as solid-phase peptide synthesis, solution-phase synthesis, or N-carboxy-anhydride polymerisation, and therefore the whole process remains unproved. Full article
(This article belongs to the Special Issue New Electrodes Materials for Electroanalytical Applications)
Show Figures

Figure 1

21 pages, 1579 KB  
Article
Popcorn-like Particles from an Amino Acid, Poly(L-Cysteine) as Drug Delivery System with Blood-Compatible, Bio-Compatible, Antibacterial, and Antioxidant Properties
by Nurettin Sahiner, Sahin Demirci, Betul Ari, Selin S. Suner, Mehtap Sahiner and Olgun Guven
Micro 2026, 6(1), 6; https://doi.org/10.3390/micro6010006 - 13 Jan 2026
Viewed by 143
Abstract
A facile and single-step synthesis of poly(L-Cysteine) (p(L-Cys)) particles through microemulsion polymerization using tetrakis(hydroxymethyl) phosphonium chloride (THPC) as crosslinker is accomplished for the first time. The L-Cys:THPC ratio in p(L-Cys) particles was calculated as 80:20% (by weight) with elemental analyses, and the generation [...] Read more.
A facile and single-step synthesis of poly(L-Cysteine) (p(L-Cys)) particles through microemulsion polymerization using tetrakis(hydroxymethyl) phosphonium chloride (THPC) as crosslinker is accomplished for the first time. The L-Cys:THPC ratio in p(L-Cys) particles was calculated as 80:20% (by weight) with elemental analyses, and the generation of p(L-Cys) particles was confirmed. SEM imaging revealed a popcorn-like morphology of the p(L-Cys) particles with a 1–20 µm particle size range. The isoelectric point of p(L-Cys) particles was determined at pH 1.15 via zeta potential measurements. The hydrolytic degradation of p(L-Cys) particles was determined as about 85% within 3 h (by weight). The p(L-Cys) particles displayed excellent blood compatibility with a hemolysis % ratio of <2.3% and a blood clotting index of 95% at 1 mg/mL concentration. Moreover, cell compatibility tests up to 50 mg/mL against L929 fibroblast cells exhibited about 90% cell viability for p(L-Cys) particles versus 58% for L-Cys molecule. The antimicrobial efficacy of the L-Cys molecules was notably enhanced in p(L-Cys) particles, exhibiting a 5-fold reduction in minimal bactericidal concentration (MBC) values against E. coli (Gram-negative, ATCC 8739) and a 2-fold reduction against S. aureus (Gram-positive, ATCC 6538). Additionally, the antioxidant capacity of p(L-Cys) particles was retained somewhat, measured as 0.14 ± 0.01 µM versus 2.25 ± 0.03 µM Trolox equivalent/g for L-Cys. Therefore, p(L-Cys) particles are versatile and offer a unique avenue for immense biomedical use. Full article
Show Figures

Figure 1

15 pages, 1874 KB  
Article
Ras Homolog A (RhoA) Is Involved in the Innate Immune Defense of the Red Swamp Crayfish Procambarus clarkii
by Shengjie Ren, Wenjing Xu, Xianjun Ma, Chunhua Ma, Aimin Wang, Qiuning Liu and Lishang Dai
Biology 2026, 15(2), 112; https://doi.org/10.3390/biology15020112 - 6 Jan 2026
Viewed by 202
Abstract
RhoA (Ras homolog A) is a prominent member of the Rho GTPase family, playing a key role in various cellular processes such as cytoskeletal dynamics, cell migration, and immune responses. However, its function in red swamp crayfish remains unclear. In this study, it [...] Read more.
RhoA (Ras homolog A) is a prominent member of the Rho GTPase family, playing a key role in various cellular processes such as cytoskeletal dynamics, cell migration, and immune responses. However, its function in red swamp crayfish remains unclear. In this study, it is proposed that RhoA may regulate the innate immune response in P. clarkii. The gene was fully characterized as PcRhoA in P. clarkii. The results showed that the open reading frame (ORF) of PcRhoA is 663 bp, encoding a 220-amino acid protein with a conserved Rho domain of 174 amino acids. Phylogenetic analysis placed PcRhoA close to Cherax quadricarinatus RhoA. RT-qPCR analysis revealed high expression levels of the PcRhoA gene in the hepatopancreas, muscle, heart, ovary, and stomach, with lower expression in the blood, intestine, gills, and tentacle gland. Furthermore, PcRhoA mRNA transcript was significantly upregulated in the intestine following LPS and Poly I:C challenges. Knockdown of PcRhoA suppressed the expression of downstream genes in the immune signaling pathway. These results indicate that PcRhoA appears to play a pivotal role in regulating the immune response of crayfish. Full article
Show Figures

Figure 1

18 pages, 1500 KB  
Article
Synthesis and Characterization of Bioactive Oligoitaconates with Amino Acid Functional Groups for Tissue Engineering
by Marta Chrószcz-Porębska, Sylwia Waśkiewicz, Tomasz Gołofit and Agnieszka Gadomska-Gajadhur
Int. J. Mol. Sci. 2026, 27(1), 324; https://doi.org/10.3390/ijms27010324 - 28 Dec 2025
Viewed by 278
Abstract
Improving the hydrophilicity and tissue adhesion of polymers remains a significant challenge in tissue engineering and is often addressed by introducing functional groups that enhance polymer–tissue interactions. In this field, L-cysteine (Cys) and N-acetyl-L-cysteine (NAC) are particularly interesting due to their functional carboxyl [...] Read more.
Improving the hydrophilicity and tissue adhesion of polymers remains a significant challenge in tissue engineering and is often addressed by introducing functional groups that enhance polymer–tissue interactions. In this field, L-cysteine (Cys) and N-acetyl-L-cysteine (NAC) are particularly interesting due to their functional carboxyl and amine groups, which are prone to hydrogen bonding. Following this trend, this study (i) investigated the feasibility of grafting Cys or NAC onto the linear oligoitaconates via thio-Michael addition and (ii) examined the influence of amino acid incorporation on the material’s physicochemical properties. NMR-based calculations confirmed nearly 100% addition efficiency for Cys and a slightly lower, but still high, efficiency for NAC. FT-IR spectra confirmed thiol-based addition, as signal from the Cys/NAC S–H stretching vibrations was not observed in the adduct’s spectra. The obtained adducts showed thermal stability up to 200 °C and glass transition temperatures below −20 °C. They were soluble in common organic solvents, except for Cys adducts with oligo(propylene itaconate) and oligo(hexylene itaconate), which were water-soluble only. Due to the low molecular weight (below 1000 g/mol) of oligoitaconates, their adducts cannot serve as standalone scaffold components. However, they showed potential for use as modifiers for high-molecular-weight polylactide or poly(ɛ-caprolactone)-based scaffolds. Full article
Show Figures

Graphical abstract

15 pages, 3067 KB  
Communication
Optimization of Poly(l-Amino Acids)-Based Platforms for Sensing and Biosensing: A Cyclic Voltammetry Study
by Giulia Selvolini, Agnese Bellabarba, Costanza Scopetani, Carlo Viti, Tania Martellini, Alessandra Cincinelli and Giovanna Marrazza
Sensors 2025, 25(23), 7230; https://doi.org/10.3390/s25237230 - 27 Nov 2025
Viewed by 460
Abstract
Poly(amino acids) and gold nanoparticles are stable and biocompatible materials with distinguishing features which can be used to build nanocomposite electrochemical platforms for sensing applications. This paper presents the optimization of the building steps of these nanocomposite platforms using cyclic voltammetry. Screen-printed graphite [...] Read more.
Poly(amino acids) and gold nanoparticles are stable and biocompatible materials with distinguishing features which can be used to build nanocomposite electrochemical platforms for sensing applications. This paper presents the optimization of the building steps of these nanocomposite platforms using cyclic voltammetry. Screen-printed graphite electrodes were first modified by electropolymerizing various l-amino acids and then by electrodepositing gold nanoparticles. The electroactive surface area was calculated for all platforms, which were then applied in the electrochemical oxidation of 1-naphthol as a model analyte: oxidation peaks were observed in all cases, with the current peak height increasing with increasing analyte concentration, thus demonstrating the potential of nanocomposite platforms for developing electrochemical sensors and biosensors. Full article
(This article belongs to the Section Sensors Development)
Show Figures

Graphical abstract

24 pages, 15012 KB  
Article
A New Way to Engineer Cell Sheets for Articular Cartilage Regeneration
by Ta-Lun Tan, Yuan Tseng, Jia-Wei Li, Cheng-Tse Yang, Hsuan-Yu Chen, Her-I Lee, Jun-Jen Liu, Yi-Yuan Yang and How Tseng
J. Funct. Biomater. 2025, 16(12), 437; https://doi.org/10.3390/jfb16120437 - 25 Nov 2025
Viewed by 1190
Abstract
Background: Articular cartilage has limited self-repair capacity. While thermoresponsive poly N-isopropyl acrylamide (pNIPAAm)-based Cell Sheet Engineering (CSE) is a promising scaffold-free strategy, its inherent material properties pose limitations. This study developed and validated a novel, non-thermoresponsive CSE platform for functional cartilage regeneration. [...] Read more.
Background: Articular cartilage has limited self-repair capacity. While thermoresponsive poly N-isopropyl acrylamide (pNIPAAm)-based Cell Sheet Engineering (CSE) is a promising scaffold-free strategy, its inherent material properties pose limitations. This study developed and validated a novel, non-thermoresponsive CSE platform for functional cartilage regeneration. Methods: A culture platform was fabricated by grafting the biocompatible polymer poly gamma-glutamic acid (γ-PGA) and a disulfide-containing amino acid onto porous PET membranes. This design enables intact cell sheet detachment with its native extracellular matrix (ECM) via specific cleavage of the disulfide bonds by a mild reducing agent. Results: The hydrated substrate exhibited a biomimetic stiffness (~16.2 MPa) that closely mimics native cartilage. The platform showed superior biocompatibility and supported the cultivation of multi-layered rabbit chondrocyte sheets rich in Collagen II and Glycosaminoglycans. Critically, in a rabbit full-thickness defect model, transplanted autologous cell sheets successfully regenerated integrated, hyaline-like cartilage at 12 weeks, as confirmed by MRI, CT, and histological analyses. Conclusions: This novel CSE platform, featuring highly biomimetic stiffness and a gentle, chemically specific detachment mechanism, represents a highly promising clinical strategy for repairing articular cartilage defects. Full article
Show Figures

Figure 1

45 pages, 5593 KB  
Review
Synthesis of 2-Oxazolines from N-Allyl and N-Propargyl Amides
by Karolina Bojar, Danuta Branowska and Ewa Wolińska
Molecules 2025, 30(22), 4369; https://doi.org/10.3390/molecules30224369 - 12 Nov 2025
Viewed by 829
Abstract
2-Oxazolines are five-membered heterocyclic compounds with significant biological properties. They also play an important role in organic synthesis, acting as chiral ligands and protecting groups for hydroxyamino acids and amino alcohols. Poly(2-oxazolines) are known coating materials, for example, in biomedicine. Classic synthetic methods [...] Read more.
2-Oxazolines are five-membered heterocyclic compounds with significant biological properties. They also play an important role in organic synthesis, acting as chiral ligands and protecting groups for hydroxyamino acids and amino alcohols. Poly(2-oxazolines) are known coating materials, for example, in biomedicine. Classic synthetic methods of 2-oxazolines involve a dehydrative cyclisation reaction between amino alcohols and carboxylic acids, acid chlorides, nitriles, imidates, and aldehydes. However, the electrophilic intramolecular cyclization of unsaturated amides is becoming an increasingly important synthetic method for the preparation of 2-oxazolines. This brief review summarizes procedures for synthesizing oxazolines using the electrophilic intramolecular oxidative cyclisation of N-allyl and N-propargyl amides, as published between 2014 and 2024. It covers the synthesis of 5-halomethyl-, 5-trifluoromethyl-, 5-sulfonylmethyl-, 5-sulfenylmethyl-, 5-selenylmethyl-, 5-acetoxymethyl-, 5-hydroxymethyl-, 5-aminomethyl-, 5-alkilo-, and 5-alkylideneoxazolines. Full article
Show Figures

Graphical abstract

7 pages, 1946 KB  
Proceeding Paper
Styrene–Divinylbenzene Copolymers Functionalized with Amino Acid Groups: Synthesis and Physicochemical Characterization
by Adriana Popa, Aurelia Visa, Laura Cocheci, Lavinia Lupa, Milica Țară-Lungă Mihali and Ecaterina Stela Dragan
Chem. Proc. 2025, 18(1), 60; https://doi.org/10.3390/ecsoc-29-26721 - 11 Nov 2025
Viewed by 198
Abstract
This work investigates the physicochemical characterization of two poly(styrene-co-divinylbenzene) copolymer supports, containing 6.7% and 15% divinylbenzene, functionalized with glycine. The resulting copolymers were characterized using Fourier transform infrared spectroscopy, thermogravimetric analysis, energy-dispersive X-ray spectroscopy, and scanning electron microscopy. The degree of amino acid [...] Read more.
This work investigates the physicochemical characterization of two poly(styrene-co-divinylbenzene) copolymer supports, containing 6.7% and 15% divinylbenzene, functionalized with glycine. The resulting copolymers were characterized using Fourier transform infrared spectroscopy, thermogravimetric analysis, energy-dispersive X-ray spectroscopy, and scanning electron microscopy. The degree of amino acid functionalization was estimated by statistical modeling of the repeating structural units and through analysis of nitrogen content. Thermogravimetric analysis (TGA) was further employed to investigate the impact of grafted amino acid groups on the thermal stability and decomposition behavior of the copolymers. Full article
Show Figures

Figure 1

11 pages, 2006 KB  
Article
Synthesis of Poly(Lactic Acid-co-Arginine) and Construction of Its Ternary Phase Diagram for Nonsolvent Induced Phase Separation
by Yinying Zhu, Hongxia Yan, Bei Wang, Zihan Shangguan and Junyan Yao
Materials 2025, 18(20), 4816; https://doi.org/10.3390/ma18204816 - 21 Oct 2025
Viewed by 532
Abstract
L-arginine, a basic amino acid, exhibits high biocompatibility, reactivity, and absorbability. It was selected as the co-polymer modification monomer for L-lactic acid with the objective of enhancing the hydrophilicity of poly(lactic acid) (PLA), neutralizing the acidity of PLA degradation products, and regulating the [...] Read more.
L-arginine, a basic amino acid, exhibits high biocompatibility, reactivity, and absorbability. It was selected as the co-polymer modification monomer for L-lactic acid with the objective of enhancing the hydrophilicity of poly(lactic acid) (PLA), neutralizing the acidity of PLA degradation products, and regulating the degradation cycle. The copolymer poly(lactic acid-co-arginine) (PLAA) was synthesized by direct melting polycondensation of L-arginine and L-lactic acid, and the structures and properties of PLAA were characterized. The results indicated the presence of –NH2, –NH–, and NH= in the molecular chain of the copolymer PLAA. Furthermore, the PLAA was identified as an amorphous copolymer. The “PLAA/CHCl3/C6H14” ternary phase diagram was constituted by nonsolvent-induced phase separation (NIPS) by selecting chloroform (CHCl3) as a good solvent and n-hexane (C6H14) as a nonsolvent. The phase diagram displays three distinguishable regions: the homogeneous zone, the metastable zone, and the phase separation zone. These regions are identified by the binodal and spinodal curves. The ternary phase diagram establishes a theoretical foundation for the preparation and processing of PLAA nanoparticles, composite materials, and porous fibers or membranes. Full article
Show Figures

Figure 1

27 pages, 2871 KB  
Article
Design of Polycation-Functionalized Resveratrol Nanocrystals for Intranasal Administration
by Angela Bonaccorso, Elide Zingale, Giuseppe Caruso, Anna Privitera, Claudia Carbone, Maria Josè Lo Faro, Filippo Caraci, Teresa Musumeci and Rosario Pignatello
Pharmaceutics 2025, 17(10), 1346; https://doi.org/10.3390/pharmaceutics17101346 - 18 Oct 2025
Viewed by 851
Abstract
Background/Objectives: Nanocrystals (NCs) are a relatively underexplored yet adaptable platform with broad potential for various applications. Currently, the surface modification of NCs leads to the development of versatile platforms capable of enhancing targeted delivery potential and supporting the advancement of precision medicine. With [...] Read more.
Background/Objectives: Nanocrystals (NCs) are a relatively underexplored yet adaptable platform with broad potential for various applications. Currently, the surface modification of NCs leads to the development of versatile platforms capable of enhancing targeted delivery potential and supporting the advancement of precision medicine. With this in mind, this study focused on the design and surface functionalization of a resveratrol (RSV) NC selected for its antioxidant and neuroprotective effects. Methods: The design of the RSV NC was assessed by the Quality by Design approach. With the aim of intranasal administration, we assessed the RSV NC functionalization with a cationic poly (amino acid) belonging to the class of cell-penetrating peptides. Both naked and surface-modified RSV nanosuspensions were characterized in terms of mucoadhesion, behavior in artificial cerebrospinal fluid, crystallinity, solubility, and storage stability. The scavenging activity (%) of neat RSV and its nanosized forms was measured using the DPPH assay. Results: RSV NCs were successfully designed, producing truncated cubic crystals (~240 nm) with an ~80% drug content. Functionalization was efficiently achieved with poly-l-arginine hydrochloride as revealed by DSC and FTIR and resulted in a positively charged nanosuspension. Nanonization technology improved drug solubility in water and did not affect RSV scavenging activity. Technological characterization demonstrated that both nanosuspensions present suitable properties for intranasal administration in terms of particle size, mucoadhesive tendency, and stability in artificial cerebrospinal fluid. An MTT assay revealed the safety of all treatments in human microglia (HMC3) cells. Conclusions: RSV NCs’ functionalization enhanced their brain delivery potential, establishing a promising platform to improve therapeutic outcomes in neurodegenerative diseases. Full article
(This article belongs to the Special Issue Nasal Nanotechnology: What Do We Know and What Is Yet to Come?)
Show Figures

Figure 1

18 pages, 3996 KB  
Article
Electropolymerization of 5-Indolylboronic Acid: Morphological, Spectroscopic, and Electrochemical Characterization with Perspective Toward Functional Applications
by Danilo Ramos, María Jesús Aguirre and Francisco Armijo
Polymers 2025, 17(19), 2702; https://doi.org/10.3390/polym17192702 - 8 Oct 2025
Viewed by 797
Abstract
Poly(5-indolylboronic acid) was synthesized electrochemically via cyclic voltammetry using various electrodes, including screen-printed carbon electrodes, glassy carbon electrodes, highly oriented pyrolytic graphite, and 304 stainless steel. This study provides a thorough analysis of the resulting conducting polymer’s electrochemical behavior, morphological and structural characteristics, [...] Read more.
Poly(5-indolylboronic acid) was synthesized electrochemically via cyclic voltammetry using various electrodes, including screen-printed carbon electrodes, glassy carbon electrodes, highly oriented pyrolytic graphite, and 304 stainless steel. This study provides a thorough analysis of the resulting conducting polymer’s electrochemical behavior, morphological and structural characteristics, and potential applications. The following techniques were employed: cyclic voltammetry, electrochemical impedance spectroscopy, Fourier-transform infrared spectroscopy, Raman spectroscopy, and field-emission scanning electron microscopy. The polymer exhibits pH-dependent redox activity within the pH range of 4–10, displaying Nernstian behavior and achieving a specific areal capacitance of 0.234 mF∙cm−2 on an SPCE electrode. This result highlights the electrode’s efficiency in terms of charge storage. Impedance data indicate that the modified electrodes demonstrate a substantial decrease in charge transfer resistance and improved interfacial conductivity compared to bare electrodes. Contact angle measurements show that the presence of boronic acid groups makes the polymer hydrophilic. However, when 5PIBA was incubated in the presence of molecules containing hydroxyl groups or certain proteins, such as casein, no adsorption was observed. This suggests limited interaction with functional groups such as amino, hydroxide, and carboxyl groups present in these molecules, indicating the potential application of the polymer in biocorrosion. 5PIBA forms homogeneous, stable, and electroactive coatings on various substrates, making it a promising and versatile material for electrochemical technologies, and paving the way for future functionalization strategies. Full article
(This article belongs to the Special Issue Advanced Electrically Conductive Polymers and Composites)
Show Figures

Figure 1

19 pages, 6569 KB  
Article
Disordered Protein Tail Is Wagging Poly(ADP-ribosyl)ation
by Guillaume Bordet, Yaroslava Karpova, Saraynia Espeseth, Gavin Mitzel, Zachary Bigelow and Alexei V. Tulin
Int. J. Mol. Sci. 2025, 26(17), 8166; https://doi.org/10.3390/ijms26178166 - 22 Aug 2025
Viewed by 1252
Abstract
Intrinsically disordered regions (IDRs) are present in nearly all proteins, often accounting for more than 40% of their amino acid sequence. Unlike structured domains, IDRs lack sequence or structural conservation across species while maintaining conserved biological functions. Here, we discovered that the previously [...] Read more.
Intrinsically disordered regions (IDRs) are present in nearly all proteins, often accounting for more than 40% of their amino acid sequence. Unlike structured domains, IDRs lack sequence or structural conservation across species while maintaining conserved biological functions. Here, we discovered that the previously uncharacterized disordered tail region of Poly(ADP-ribose) glycohydrolase (PARG) controls its localization and activity. Despite its structural divergence, this domain supports conserved regulatory functions across species. Deletion of the disordered tail results in cytoplasmic mislocalization, aberrant accumulation in the nucleolus, impaired chromatin association, and reduced enzymatic activity. Mass spectrometry analysis reveals that this disordered region mediates interactions with nuclear transport factors, post-translational modification enzymes, and chromatin-associated complexes. Together, these results demonstrate that the disordered tail region of PARG acts as a regulatory hub that integrates multiple layers of control to ensure proper subcellular localization and chromatin function. Full article
(This article belongs to the Collection Feature Papers in Molecular Genetics and Genomics)
Show Figures

Graphical abstract

23 pages, 3835 KB  
Article
Computational Saturation Mutagenesis Reveals Pathogenic and Structural Impacts of Missense Mutations in Adducin Proteins
by Lennon Meléndez-Aranda, Jazmin Moreno Pereyda and Marina M. J. Romero-Prado
Genes 2025, 16(8), 916; https://doi.org/10.3390/genes16080916 - 30 Jul 2025
Viewed by 1578
Abstract
Background and objectives: Adducins are cytoskeletal proteins essential for membrane stability, actin–spectrin network organization, and cell signaling. Mutations in the genes ADD1, ADD2, and ADD3 have been linked to hypertension, neurodevelopmental disorders, and cancer. However, no comprehensive in silico saturation [...] Read more.
Background and objectives: Adducins are cytoskeletal proteins essential for membrane stability, actin–spectrin network organization, and cell signaling. Mutations in the genes ADD1, ADD2, and ADD3 have been linked to hypertension, neurodevelopmental disorders, and cancer. However, no comprehensive in silico saturation mutagenesis study has systematically evaluated the pathogenic potential and structural consequences of all possible missense mutations in adducins. This study aimed to identify high-risk variants and their potential impact on protein stability and function. Methods: We performed computational saturation mutagenesis for all possible single amino acid substitutions across the adducin proteins family. Pathogenicity predictions were conducted using four independent tools: AlphaMissense, Rhapsody, PolyPhen-2, and PMut. Predictions were validated against UniProt-annotated pathogenic variants. Predictive performance was assessed using Cohen’s Kappa, sensitivity, and precision. Mutations with a prediction probability ≥ 0.8 were further analyzed for structural stability using mCSM, DynaMut2, MutPred2, and Missense3D, with particular focus on functionally relevant domains such as phosphorylation and calmodulin-binding sites. Results: PMut identified the highest number of pathogenic mutations, while PolyPhen-2 yielded more conservative predictions. Several high-risk mutations clustered in known regulatory and binding regions. Substitutions involving glycine were consistently among the most destabilizing due to increased backbone flexibility. Validated variants showed strong agreement across multiple tools, supporting the robustness of the analysis. Conclusions: This study highlights the utility of multi-tool bioinformatic strategies for comprehensive mutation profiling. The results provide a prioritized list of high-impact adducin variants for future experimental validation and offer insights into potential therapeutic targets for disorders involving ADD1, ADD2, and ADD3 mutations. Full article
(This article belongs to the Section Bioinformatics)
Show Figures

Graphical abstract

15 pages, 3567 KB  
Article
Role of Charge Density of Polycations in DNA Complexation and Condensation
by Jianxiang Huang, Yangwei Jiang, Dong Zhang, Jingyuan Li, Youqing Shen and Ruhong Zhou
Biomolecules 2025, 15(7), 983; https://doi.org/10.3390/biom15070983 - 10 Jul 2025
Cited by 1 | Viewed by 882
Abstract
Polycationic gene vectors have been studied extensively for gene delivery, and the charge density of polycations plays a pivotal role in condensing nucleic acids. Recently, we have synthesized two kinds of polycations with varied charge densities: poly(2-(dimethylamino)ethyl methacrylate) (denoted as A100) and a [...] Read more.
Polycationic gene vectors have been studied extensively for gene delivery, and the charge density of polycations plays a pivotal role in condensing nucleic acids. Recently, we have synthesized two kinds of polycations with varied charge densities: poly(2-(dimethylamino)ethyl methacrylate) (denoted as A100) and a copolymer of 2-(tetramethyleneimino)ethyl methacrylate and 2-(diisopropyl-amino)ethyl methacrylate with a 3:1 feed ratio (denoted as B75D25). Despite its lower charge density, B75D25-based vectors exhibit higher transfection efficiency than A100-based vectors, prompting the hypothesis that hydrophobic interactions, rather than solely high charge density, enhance DNA complexation and gene delivery. This study aims to investigate the molecular mechanisms underlying these differences using molecular dynamics (MD) simulations to study the complexation of DNA with B75D25s and A100s. Our simulations reveal that DNA is quite uniformly covered by B75D25s, and the complexation is not only driven by the electrostatic attraction with DNA but more importantly by the hydrophobic interactions among B75D25s. In contrast, only a small fraction of A100s bind to DNA, which is due to the strong electrostatic repulsion among A100s. Our results reveal the contribution of hydrophobic interactions to the complexation of low-charge-density B75D25s with DNA. These results suggest that high charge density may not be essential for DNA condensation and efficient gene delivery. Full article
Show Figures

Figure 1

23 pages, 1189 KB  
Article
Hyaluronic Acid-Graft-Poly(L-Lysine): Synthesis and Evaluation as a Gene Delivery System
by Viktor Korzhikov-Vlakh, Polina Teterina, Nina Gubina, Apollinariia Dzhuzha, Tatiana Tennikova and Evgenia Korzhikova-Vlakh
Polysaccharides 2025, 6(3), 60; https://doi.org/10.3390/polysaccharides6030060 - 5 Jul 2025
Cited by 1 | Viewed by 2126
Abstract
The synthesis of novel biodegradable polymers as non-viral vectors remains one of the challenging tasks in the field of gene delivery. In this study, the synthesis of the polysaccharide-g-polypeptide copolymers, namely, hyaluronic acid-g-polylysine (HA-g-PLys), using a copper-free [...] Read more.
The synthesis of novel biodegradable polymers as non-viral vectors remains one of the challenging tasks in the field of gene delivery. In this study, the synthesis of the polysaccharide-g-polypeptide copolymers, namely, hyaluronic acid-g-polylysine (HA-g-PLys), using a copper-free strain-promoted azide-alkyne cycloaddition reaction was proposed. For this purpose, hyaluronic acid was modified with dibenzocyclooctyne moieties, and poly-L-lysine with a terminal azido group was obtained using ring-opening polymerization of N-carboxyanhydride of the corresponding protected amino acid, initiated with the amino group azido-PEG3-amine. Two HA-g-PLys samples with different degrees of grafting were synthesized, and the structures of all modified and synthesized polymers were confirmed using 1H NMR and FTIR spectroscopy. The HA-g-PLys samples obtained were able to form nanoparticles in aqueous media due to self-assembly driven by electrostatic interactions. The binding of DNA and model siRNA by copolymers to form polyplexes was analyzed using ethidium bromide, agarose gel electrophoresis, and SybrGreen I assays. The hydrodynamic diameter of polyplexes was ˂300 nm (polydispersity index, PDI ˂ 0.3). The release of a model fluorescently-labeled oligonucleotide in the complex biological medium was significantly higher in the case of HA-g-PLys as compared to that in the case of PLys-based polyplexes. In addition, the cytotoxicity in normal and cancer cells, as well as the ability of HA-g-PLys to facilitate intracellular delivery of anti-GFP siRNA to NIH-3T3/GFP+ cells, were evaluated. Full article
Show Figures

Figure 1

Back to TopTop