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Search Results (253)

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Keywords = photo-switching

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14 pages, 5467 KiB  
Article
A tetra-ortho-Chlorinated Azobenzene Molecule for Visible-Light Photon Energy Conversion and Storage
by Shuxin Tang, Yating Zhang, Jun Xia, Jing Qi, Fan Tang, Fei Zhai and Liqi Dong
Molecules 2025, 30(11), 2333; https://doi.org/10.3390/molecules30112333 - 27 May 2025
Viewed by 568
Abstract
The development of photoactive molecules for photothermal energy storage is a focus of research in solar energy utilization technology. Azobenzene photoswitch has emerged as a promising candidate for solar energy conversion and storage due to its unique photoisomerization characteristics. Nonetheless, a majority of [...] Read more.
The development of photoactive molecules for photothermal energy storage is a focus of research in solar energy utilization technology. Azobenzene photoswitch has emerged as a promising candidate for solar energy conversion and storage due to its unique photoisomerization characteristics. Nonetheless, a majority of azobenzene-based molecular photothermal systems have a significant drawback: they depend on ultraviolet light for E-to-Z isomerization to store photon energy rather than visible light, which seriously hinders the development of azobenzene photoswitch in practical solar energy utilization applications. In this study, an azobenzene photothermal molecule that can effectively store visible-light photon energy was design and synthesized, which includes a tetra-ortho-chlorinated azo structure as the “head” part and an alkyl chain at para-position as the “tail” part. The ultraviolet–visible and 1H NMR spectrum indicated that the obtained tetra-ortho-chlorinated azobenzene photothermal molecule could effectively absorb and store photon energy under 550 nm irradiation and release the stored energy upon 430 nm light irradiation. The storage energy density of the charged azobenzene photothermal molecule was determined to be 13.50 kJ/mol through differential scanning calorimetry and 28.21 kJ/mol via density functional theory theoretical calculations. This discrepancy was ascribed to the 64% Z-isomer yield harvesting during the charging process. Furthermore, the obtained tetra-ortho-chlorinated azobenzene exhibited long-term energy storage (approximately 11 days of half-life) and cyclic stability (100 cycles). Notably, the E-isomer of tetra-ortho-chlorinated azobenzene exhibited a high degree of supercooling, which may be advantageous for use in extremely low-temperature environments. Full article
(This article belongs to the Section Photochemistry)
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17 pages, 2157 KiB  
Article
Modulation of Kv Channel Gating by Light-Controlled Membrane Thickness
by Rohit Yadav, Juergen Pfeffermann, Nikolaus Goessweiner-Mohr, Toma Glasnov, Sergey A. Akimov and Peter Pohl
Biomolecules 2025, 15(5), 744; https://doi.org/10.3390/biom15050744 - 21 May 2025
Viewed by 681
Abstract
Voltage-gated potassium (Kv) channels are e ssential for shaping action potentials and rely on anionic lipids for proper gating, yet the mechanistic basis of lipid–channel interactions remains unclear. Cryo-electron microscopy studies suggest that, in the down state, arginine residues of the voltage sensor [...] Read more.
Voltage-gated potassium (Kv) channels are e ssential for shaping action potentials and rely on anionic lipids for proper gating, yet the mechanistic basis of lipid–channel interactions remains unclear. Cryo-electron microscopy studies suggest that, in the down state, arginine residues of the voltage sensor draw lipid phosphates upward, leading to a local membrane thinning of ~5 Å—an effect absent in the open state. To test whether membrane thickness directly affects voltage sensor function, we reconstituted Kv channels from Aeropyrum pernix (KvAP) into planar lipid bilayers containing photoswitchable lipids. Upon blue light illumination, the membrane thickened, and KvAP activity increased; UV light reversed both effects. Our findings indicate that membrane thickening weakens the interaction between lipid phosphates and voltage-sensing arginines in the down state, lowering the energy barrier for the transition to the up state and thereby promoting channel opening. This non-genetic, membrane-mediated approach provides a new strategy to control ion channel activity using light and establishes a direct, reversible link between membrane mechanics and voltage sensing, with potential applications in the remote control of neuronal excitability. Full article
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13 pages, 1463 KiB  
Article
Weak-Light-Enhanced AlGaN/GaN UV Phototransistors with a Buried p-GaN Structure
by Haiping Wang, Feiyu Zhang, Xuzhi Zhao, Haifan You, Zhan Ma, Jiandong Ye, Hai Lu, Rong Zhang, Youdou Zheng and Dunjun Chen
Electronics 2025, 14(10), 2076; https://doi.org/10.3390/electronics14102076 - 20 May 2025
Viewed by 420
Abstract
We propose a novel ultraviolet (UV) phototransistor (PT) architecture based on an AlGaN/GaN high electron mobility transistor (HEMT) with a buried p-GaN layer. In the dark, the polarization-induced two-dimensional electron gas (2DEG) at the AlGaN/GaN heterojunction interface is depleted by the buried p-GaN [...] Read more.
We propose a novel ultraviolet (UV) phototransistor (PT) architecture based on an AlGaN/GaN high electron mobility transistor (HEMT) with a buried p-GaN layer. In the dark, the polarization-induced two-dimensional electron gas (2DEG) at the AlGaN/GaN heterojunction interface is depleted by the buried p-GaN and the conduction channel is closed. Under UV illumination, the depletion region shrinks to just beneath the AlGaN/GaN interface and the 2DEG recovers. The retraction distance of the depletion region during device turn-on operation is comparable to the thickness of the AlGaN barrier layer, which is an order of magnitude smaller than that in the conventional p-GaN/AlGaN/GaN PT, whose retraction distance spans the entire GaN channel layer. Consequently, the proposed device demonstrates significantly enhanced weak-light detection capability and improved switching speed. Silvaco Atlas simulations reveal that under a weak UV intensity of 100 nW/cm2, the proposed device achieves a photocurrent density of 1.68 × 10−3 mA/mm, responsivity of 8.41 × 105 A/W, photo-to-dark-current ratio of 2.0 × 108, UV-to-visible rejection ratio exceeding 108, detectivity above 1 × 1019 cm·Hz1/2/W, and response time of 0.41/0.41 ns. The electron concentration distributions, conduction band variations, and 2DEG recovery behaviors in both the conventional and novel structures under dark and weak UV illumination are investigated in depth via simulations. Full article
(This article belongs to the Special Issue Advances in Semiconductor GaN and Applications)
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27 pages, 1584 KiB  
Article
Structure–Property Relationships in Novel Series of Photoswitchable Local Anesthetic Ethercaine Derivatives: Emphasis on Biological and Photophysical Properties
by Alexey Noev, Daria Likhobabina, Janna Sutemieva, Anna Plyutinskaya, Dmitry Cheshkov, Natalia Morozova, Aleksandra Vinokurova, Yuriy Vasil’ev, Nikita Suvorov, Elena Nemtzova, Andrei Pankratov, Elena Filonenko, Petr Shegay, Andrey Kaprin and Mikhail Grin
Int. J. Mol. Sci. 2025, 26(7), 3244; https://doi.org/10.3390/ijms26073244 - 31 Mar 2025
Viewed by 768
Abstract
The insufficient selectivity of existing local anesthetics can lead to serious adverse effects. Considering the widespread use of this class of drugs, the development of new local anesthetics that do not cause side effects is an important task. One approach to address this [...] Read more.
The insufficient selectivity of existing local anesthetics can lead to serious adverse effects. Considering the widespread use of this class of drugs, the development of new local anesthetics that do not cause side effects is an important task. One approach to address this issue is the use of photopharmacology, which enables the creation of agents with light-controlled biological activity. Several examples of azobenzene-based photoswitchable blockers of voltage-gated sodium (Nav) channels have been described so far. These compounds can be used as light-controlled local anesthetics, one of which is ethercaine, synthesized by our group earlier. However, systematic studies of the “structure-activity” relationship in the series of light-controlled local anesthetics based on azobenzene are absent in the literature. The aim of this study was to obtain new derivatives of ethercaine and investigate their photophysical and biological properties. A total of 14 new derivatives were synthesized, and their structure was confirmed by various physicochemical analysis methods. The Z-E isomerization half-lifes were determined for all the synthesized compounds. The cytotoxic effect on normal cells was studied in vitro using human dermal fibroblasts (DF2). The local anesthetic activity of all the synthesized compounds was evaluated in vivo on a model of surface anesthesia in both darkness and under UV light irradiation. Based on the results obtained, conclusions were drawn regarding the potential of the proposed substances, and optimal pathways for structural modification were identified. Full article
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19 pages, 4837 KiB  
Article
Construction of Antibacterial MoS2-ACF Phenotype Switcher for Bidirectionally Regulating Inflammation–Proliferation Transition in Wound Healing
by Mengxin Mao, Diyi Li, Yunyun Wu, Bing Li, Xiaoqing Han, Jiao Yan, Lei Shang, Haiyuan Zhang and Xi Li
Materials 2025, 18(5), 963; https://doi.org/10.3390/ma18050963 - 21 Feb 2025
Viewed by 616
Abstract
The transition between the inflammatory phase and the proliferative phase is critical for wound healing. However, the development of proper switchers that can regulate this transition is facing great challenges. Macrophages play versatile roles in all wound healing phases because they can readily [...] Read more.
The transition between the inflammatory phase and the proliferative phase is critical for wound healing. However, the development of proper switchers that can regulate this transition is facing great challenges. Macrophages play versatile roles in all wound healing phases because they can readily switch from pro-inflammatory M1 phenotypes to anti-inflammatory M2 phenotypes in response to different microenvironment stimuli. Herein, taking advantage of enhanced electron transfer by coupling MoS2 with a highly conductive activated carbon fiber (ACF) network, a MoS2-ACF heterojunction structure was constructed as a macrophage M1-M2 phenotype switcher (MAPS) for regulating inflammation–proliferation transition to accelerate wound healing. In the early stages of wound repair, MAPS-mediated photothermal effects with near-infrared laser irradiation could promote macrophage reprogramming to the M1 phenotype, which can expedite inflammation. NIR photo-induced hyperthermia, together with M1 macrophages, directly and indirectly kills bacteria. Later, during the healing process, the MAPS could further reprogram macrophages towards the M2 phenotype via its inherent reactive oxygen species (ROS) scavenging ability to resolve inflammation, promoting cell proliferation. Therefore, MoS2-ACF heterojunction structures provide a new strategy to modulate inflammation–proliferation transition by rebalancing the immuno-environmental equilibrium of macrophage M1/M2 phenotypes. Full article
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17 pages, 3226 KiB  
Article
Single-Level and Two-Level Circuit Solutions for Buck-Boost AC Voltage Regulators with Phase-by-Phase Switches
by Aleksey Udovichenko, Evgeniy Grishanov, Evgeniy Kosykh, Maksim Filippov and Maksim Dybko
Electricity 2025, 6(1), 6; https://doi.org/10.3390/electricity6010006 - 12 Feb 2025
Viewed by 774
Abstract
Forming required AC voltage levels is currently one of the most pressing problems. Unstable voltage levels can lead to the failure of household and industrial equipment. This can lead to a pure effect on the production cycle. In this regard, the development of [...] Read more.
Forming required AC voltage levels is currently one of the most pressing problems. Unstable voltage levels can lead to the failure of household and industrial equipment. This can lead to a pure effect on the production cycle. In this regard, the development of AC voltage regulators has become relevant. Such regulators can perform the function of voltage level asymmetry compensators in a three-phase power supply network. In turn, new topologies should be energy-efficient and reliable. This can be achieved by reducing the number of semiconductor elements, thus reducing losses and increasing efficiency. Also, AC voltage regulators have found applications as soft-start devices for motors and have become relevant to frequency converters. The power level of such devices can vary from units to tens of kilowatts. This paper presents several circuit design solutions for AC voltage regulators with fewer switches. These solutions are made according to both a single-level and two-level system, where the level refers to the number of links that increase the transmission coefficient. The schemes were analyzed, and efficiency was evaluated through their harmonic coefficients, power factor, and efficiency coefficient. For the basic scheme, a photo of the experimental layout and its results are provided. Full article
(This article belongs to the Special Issue Recent Advances in Power and Smart Grids)
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19 pages, 3282 KiB  
Article
The Effect of Plasma Pretreatment on the Flotation of Lithium Aluminate and Gehlenite Using Light-Switchable Collectors
by Ali Zgheib, Maximilian Hans Fischer, Stéphanie Mireille Tsanang, Iliass El Hraoui, Shukang Zhang, Annett Wollmann, Alfred P. Weber, Ursula E. A. Fittschen, Thomas Schirmer and Andreas Schmidt
Separations 2024, 11(12), 362; https://doi.org/10.3390/separations11120362 - 23 Dec 2024
Viewed by 924
Abstract
The pyridinium phenolate punicine is a switchable molecule from Punica granatum. Depending on the pH, punicine exists as a cation, neutral molecule, anion, or dianion. In addition, punicine reacts to light, under the influence of which it forms radical species. We report [...] Read more.
The pyridinium phenolate punicine is a switchable molecule from Punica granatum. Depending on the pH, punicine exists as a cation, neutral molecule, anion, or dianion. In addition, punicine reacts to light, under the influence of which it forms radical species. We report on three punicine derivatives that possess an adamantyl, 2-methylnonyl, or heptadecyl substituent and on their performance in the flotation of lithium aluminate, an engineered artificial mineral (EnAM) for the recycling of lithium, e.g., from lithium-ion batteries. By optimizing the parameters: pH and light conditions (daylight, darkness), recovery rates of 92% of LiAlO2 are achieved. In all cases, the flotation of the gangue material gehlenite (Ca2Al[AlSiO7]) is suppressed. IR, the contact angle, zeta potential measurements, TG-MS, and PXRD confirm that the punicines interact with the surface of LiAlO2, which is covered by LiAl2(OH)7 after contact to water, resulting in a hydrophobization of the particle. The plasma pretreatment of the lithium aluminate has a significant influence on the flotation results and increases the recovery rates of lithium aluminate in blank tests by 58%. The oxidative plasma leads to a partial dehydratisation of the LiAl2(OH)7 and thus to a hydrophobization of the particles, while a reductive plasma causes a more hydrophilic particle surface. Full article
(This article belongs to the Special Issue Green Separation and Purification Technology)
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15 pages, 1805 KiB  
Article
A SiC Photo-Conductive Switch-Based Pulse Generator with Nanoseconds and High Voltage for Liver Cancer Cells Ablation Therapy
by Haocheng Yin, Zeyu Zhang, Yapeng Liu, Yutian Wang, Hui Guo and Yuming Zhang
Electronics 2024, 13(23), 4816; https://doi.org/10.3390/electronics13234816 - 6 Dec 2024
Viewed by 1167
Abstract
Electroporation ablation, as an innovative cancer treatment, not only preserves the structure and function of affected organs but also significantly reduces surgical risks, offers patients a safer and more effective therapeutic option, and demonstrates immense potential in the field of oncology. This paper [...] Read more.
Electroporation ablation, as an innovative cancer treatment, not only preserves the structure and function of affected organs but also significantly reduces surgical risks, offers patients a safer and more effective therapeutic option, and demonstrates immense potential in the field of oncology. This paper presents the innovative design of a high-voltage nanosecond pulse generator triggered by a silicon carbide (SiC) photoconductive switch. The generator is capable of stably outputting adjustable voltages ranging from 10 kV to 15 kV, with pulse widths precisely controlled between 10 and 15 nanoseconds, and an operating frequency adjustable from 1 Hz to 10 Hz. This device enables instant activation and deactivation of the pulse generator during ablation, enhancing the efficiency of strong electric field applications and preventing overtreatment due to delayed shutdown. This paper introduces the structure and basic principles of this novel SiC photoconductive switch-triggered pulse device and reports on the impact of device-related pulse parameters on the ablation effect of hepatocellular carcinoma cells through cell experiments. Under optimal ablation parameters, the CCK8 results show that the number of viable cells is only 0.7% of that in the untreated control group after 12 h of subculture following ablation. These findings hold significant importance for expanding the application areas of SiC devices. Full article
(This article belongs to the Special Issue Wide-Bandgap Device Application: Devices, Circuits, and Drivers)
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9 pages, 2551 KiB  
Article
Effect of the Protic vs. Non-Protic Molecular Environment on the cis to trans Conformation Change of Phototrexate Drug
by Flórián Bencze, László Kiss, Heng Li, Hui Yan, László Kollár and Sándor Kunsági-Máté
Int. J. Mol. Sci. 2024, 25(23), 12703; https://doi.org/10.3390/ijms252312703 - 26 Nov 2024
Viewed by 855
Abstract
The therapeutical applicability of the anticancer drug phototrexate, a photoswitchable derivative of the antimetabolite dihydrofolate reductase inhibitor methotrexate, highly depends on the stability of its bioactive isomer. Considering that only the cis configuration of phototrexate is bioactive, in this work, the effect of [...] Read more.
The therapeutical applicability of the anticancer drug phototrexate, a photoswitchable derivative of the antimetabolite dihydrofolate reductase inhibitor methotrexate, highly depends on the stability of its bioactive isomer. Considering that only the cis configuration of phototrexate is bioactive, in this work, the effect of the molecular environment on the stability of the cis isomer of this drug has been investigated. UV-vis absorption and fluorescence-based solvent relaxation methods have been used. Protic methanol and non-protic dimethylsulfoxide were used as medium-ranged permittivity solvents. The results showed a decreased rate of cis → trans conversion and enhanced stabilities of the cis isomer in methanol. Temperature-dependent measurements of the isomerization rate reflect the increased activation energy in methanol. Full article
(This article belongs to the Section Molecular Biophysics)
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27 pages, 5833 KiB  
Review
All-Visible-Light-Activated Diarylethene Photoswitches
by Ruiji Li, Tao Ou, Li Wen, Yehao Yan, Wei Li, Xulong Qin and Shouxin Wang
Molecules 2024, 29(21), 5202; https://doi.org/10.3390/molecules29215202 - 3 Nov 2024
Cited by 2 | Viewed by 3467
Abstract
Photochromic compounds have attracted much attention for their potential applications in photo-actuators, optoelectronic devices and optical recording techniques. This interest is driven by their key photochemical and photophysical properties, which can be reversibly modulated by light irradiation. Among them, diarylethene compounds have garnered [...] Read more.
Photochromic compounds have attracted much attention for their potential applications in photo-actuators, optoelectronic devices and optical recording techniques. This interest is driven by their key photochemical and photophysical properties, which can be reversibly modulated by light irradiation. Among them, diarylethene compounds have garnered extensive investigation due to their excellent thermal stability of both open- and closed-form isomers, robust fatigue resistance, high photocyclization quantum yield and good photochromic performance in both solution and solid phases. However, a notable limitation in expanding the utility of diarylethene compounds is the necessity for ultraviolet light to induce their photochromism. This requirement poses challenges, as ultraviolet light can be detrimental to biological tissues, and its penetration is often restricted in various media. This review provides an overview of design strategies employed in the development of visible-light-responsive diarylethene compounds. These design strategies serve as a guideline for molecular design, with the potential to significantly broaden the applications of all-visible-light-activated diarylethene compounds in the realms of materials science and biomedical science. Full article
(This article belongs to the Special Issue Materials Chemistry in China—Second Edition)
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12 pages, 2556 KiB  
Article
Effects of Residual Water on Proton Transfer-Switching Molecular Device
by Hiroto Tachikawa
Photochem 2024, 4(4), 462-473; https://doi.org/10.3390/photochem4040028 - 31 Oct 2024
Viewed by 834
Abstract
The excited state proton transfer (ESPT) reaction plays a crucial role in DNA defense and ON-OFF proton-switching molecular devices. o-Hydroxybenzaldehyde (OHBA) is the simplest model-molecule for the ESPT reactions where a proton is transferred from OH to C=O carbonyl groups by photo-excitation. [...] Read more.
The excited state proton transfer (ESPT) reaction plays a crucial role in DNA defense and ON-OFF proton-switching molecular devices. o-Hydroxybenzaldehyde (OHBA) is the simplest model-molecule for the ESPT reactions where a proton is transferred from OH to C=O carbonyl groups by photo-excitation. In the present study, the reaction mechanism of ESPT in OHBA was investigated by means of the direct ab initio molecular dynamics (AIMD) method. The triplet (T1) state of OHBA, OHBA(T1), was considered as the excited state of OHBA. The dynamic calculations showed that fast PT occurred from OH to C=O carbonyl groups at the T1 state. The time of PT was calculated to be 34–57 fs in OHBA(T1). The spin density was mainly distributed on the benzene ring (Bz) at time zero. The density was gradually transferred from Bz to C=O as a function of time on the T1 surface. When the spin density on C=O was larger than that on Bz (at time = 35–43 fs), the proton of OH was rapidly transferred to C=O. The localization of spin density on C=O dominated strongly the PT rate. Next, the effects of residual water (H2O) on the PT rate were investigated using OHBA-H2O 1:1-complexes to elucidate the effects of H2O on the PT rate in the ON-OFF proton-switching molecular devices. The PT rates were strongly dependent on the position of H2O around OHBA. The reaction mechanism is discussed based on theoretical results. Full article
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11 pages, 607 KiB  
Article
Vertical Electric-Field-Induced Switching from Strong to Asymmetric Strong–Weak Confinement in GaAs Cone-Shell Quantum Dots Using Transparent Al-Doped ZnO Gates
by Ahmed Alshaikh, Jun Peng, Robert Zierold, Robert H. Blick and Christian Heyn
Nanomaterials 2024, 14(21), 1712; https://doi.org/10.3390/nano14211712 - 27 Oct 2024
Viewed by 959
Abstract
The first part of this work evaluates Al-doped ZnO (AZO) as an optically transparent top-gate material for studies on semiconductor quantum dots. In comparison with conventional Ti gates, samples with AZO gates demonstrate a more than three times higher intensity in the quantum [...] Read more.
The first part of this work evaluates Al-doped ZnO (AZO) as an optically transparent top-gate material for studies on semiconductor quantum dots. In comparison with conventional Ti gates, samples with AZO gates demonstrate a more than three times higher intensity in the quantum dot emission under comparable excitation conditions. On the other hand, charges inside a process-induced oxide layer at the interface to the semiconductor cause artifacts at gate voltages above U 1 V. The second part describes an optical and simulation study of a vertical electric-field (F)-induced switching from a strong to an asymmetric strong–weak confinement in GaAs cone-shell quantum dots (CSQDs), where the charge carrier probability densities are localized on the surface of a cone. These experiments are performed at low U and show no indications of an influence of interface charges. For a large F, the measured radiative lifetimes are substantially shorter compared with simulation results. We attribute this discrepancy to an F-induced transformation of the shape of the hole probability density. In detail, an increasing F pushes the hole into the wing part of a CSQD, where it forms a quantum ring. Accordingly, the confinement of the hole is changed from strong, which is assumed in the simulations, to weak, where the local radius is larger than the bulk exciton Bohr radius. In contrast to the hole, an increasing F pushes the electron into the CSQD tip, where it remains in a strong confinement. This means the radiative lifetime for large F is given by an asymmetric confinement with a strongly confined electron and a hole in a weak confinement. To our knowledge, this asymmetric strong–weak confinement represents a novel kind of quantum mechanical confinement and has not been observed so far. Furthermore, the observed weak confinement for the hole represents a confirmation of the theoretically predicted transformation of the hole probability density from a quantum dot into a quantum ring. For such quantum rings, application as storage for photo-excited charge carriers is predicted, which can be interesting for future quantum photonic integrated circuits. Full article
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11 pages, 11784 KiB  
Article
Rational Design of High-Performance Photocontrolled Molecular Switches Based on Chiroptical Dimethylcethrene: A Theoretical Study
by Li Han, Mei Wang, Yifan Zhang, Bin Cui and Desheng Liu
Molecules 2024, 29(20), 4912; https://doi.org/10.3390/molecules29204912 - 17 Oct 2024
Cited by 1 | Viewed by 1085
Abstract
The reversible photo-induced conformation transition of a single molecule with a [5]helicene backbone has garnered considerable interest in recent studies. Based on such a switching process, one can build molecular photo-driven switches for potential applications of nanoelectronics. But the achievement of high-performance reversible [...] Read more.
The reversible photo-induced conformation transition of a single molecule with a [5]helicene backbone has garnered considerable interest in recent studies. Based on such a switching process, one can build molecular photo-driven switches for potential applications of nanoelectronics. But the achievement of high-performance reversible single-molecule photoswitches is still rare. Here, we theoretically propose a 13,14-dimethylcethrene switch whose photoisomerization between the ring-closed and ring-open forms can be triggered by ultraviolet (UV) and visible light irradiation. The electronic structure transitions and charge transport characteristics, concurrent with the photo-driven electrocyclization of the molecule, are calculated by the non-equilibrium Green’s function (NEGF) in combination with density functional theory (DFT). The electrical conductivity bears great diversity between the closed and open configurations, certifying the switching behavior and leading to a maximum on–off ratio of up to 103, which is considerable in organic junctions. Further analysis confirms the evident switching behaviors affected by the molecule–electrode interfaces in molecular junctions. Our findings are helpful for the rational design of organic photoswitches at the single-molecule level based on cethrene and analogous organic molecules. Full article
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16 pages, 2072 KiB  
Review
Chiral, Topological, and Knotted Colloids in Liquid Crystals
by Ye Yuan and Ivan I. Smalyukh
Crystals 2024, 14(10), 885; https://doi.org/10.3390/cryst14100885 - 11 Oct 2024
Cited by 6 | Viewed by 2077
Abstract
The geometric shape, symmetry, and topology of colloidal particles often allow for controlling colloidal phase behavior and physical properties of these soft matter systems. In liquid crystalline dispersions, colloidal particles with low symmetry and nontrivial topology of surface confinement are of particular interest, [...] Read more.
The geometric shape, symmetry, and topology of colloidal particles often allow for controlling colloidal phase behavior and physical properties of these soft matter systems. In liquid crystalline dispersions, colloidal particles with low symmetry and nontrivial topology of surface confinement are of particular interest, including surfaces shaped as handlebodies, spirals, knots, multi-component links, and so on. These types of colloidal surfaces induce topologically nontrivial three-dimensional director field configurations and topological defects. Director switching by electric fields, laser tweezing of defects, and local photo-thermal melting of the liquid crystal host medium promote transformations among many stable and metastable particle-induced director configurations that can be revealed by means of direct label-free three-dimensional nonlinear optical imaging. The interplay between topologies of colloidal surfaces, director fields, and defects is found to show a number of unexpected features, such as knotting and linking of line defects, often uniquely arising from the nonpolar nature of the nematic director field. This review article highlights fascinating examples of new physical behavior arising from the interplay of nematic molecular order and both chiral symmetry and topology of colloidal inclusions within the nematic host. Furthermore, the article concludes with a brief discussion of how these findings may lay the groundwork for new types of topology-dictated self-assembly in soft condensed matter leading to novel mesostructured composite materials, as well as for experimental insights into the pure-math aspects of low-dimensional topology. Full article
(This article belongs to the Special Issue Liquid Crystal Research and Novel Applications in the 21st Century)
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21 pages, 3542 KiB  
Article
Challenges and Solutions for Leave-One-Out Biosensor Design in the Context of a Rugged Fitness Landscape
by Shounak Banerjee, Keith Fraser, Donna E. Crone, Jinal C. Patel, Sarah E. Bondos and Christopher Bystroff
Sensors 2024, 24(19), 6380; https://doi.org/10.3390/s24196380 - 1 Oct 2024
Viewed by 1337
Abstract
The leave-one-out (LOO) green fluorescent protein (GFP) approach to biosensor design combines computational protein design with split protein reconstitution. LOO-GFPs reversibly fold and gain fluorescence upon encountering the target peptide, which can be redefined by computational design of the LOO site. Such an [...] Read more.
The leave-one-out (LOO) green fluorescent protein (GFP) approach to biosensor design combines computational protein design with split protein reconstitution. LOO-GFPs reversibly fold and gain fluorescence upon encountering the target peptide, which can be redefined by computational design of the LOO site. Such an approach can be used to create reusable biosensors for the early detection of emerging biological threats. Enlightening biophysical inferences for nine LOO-GFP biosensor libraries are presented, with target sequences from dengue, influenza, or HIV, replacing beta strands 7, 8, or 11. An initially low hit rate was traced to components of the energy function, manifesting in the over-rewarding of over-tight side chain packing. Also, screening by colony picking required a low library complexity, but designing a biosensor against a peptide of at least 12 residues requires a high-complexity library. This double-bind was solved using a “piecemeal” iterative design strategy. Also, designed LOO-GFPs fluoresced in the unbound state due to unwanted dimerization, but this was solved by fusing a fully functional prototype LOO-GFP to a fiber-forming protein, Drosophila ultrabithorax, creating a biosensor fiber. One influenza hemagglutinin biosensor is characterized here in detail, showing a shifted excitation/emission spectrum, a micromolar affinity for the target peptide, and an unexpected photo-switching ability. Full article
(This article belongs to the Special Issue Fluorescence Sensors for Biological and Medical Applications)
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