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Keywords = petal color change

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18 pages, 3576 KiB  
Article
Resequencing and Functional Analysis Revealed That BsDFR4 Could Cause the Formation of Different Flower Colors in Bletilla striata (Orchidaceae)
by Siting Zheng, Zeyuan Mi, Yuanqing Chang, Ruohan Huang, Jiaxin Li, Xiulin Jiang, Shuai Liu and Zhezhi Wang
Int. J. Mol. Sci. 2025, 26(8), 3555; https://doi.org/10.3390/ijms26083555 - 10 Apr 2025
Viewed by 439
Abstract
The formation of flower color is closely related to anthocyanin synthesis. In this study, flowers of Bletilla striata (Orchidaceae) exhibiting distinct color morphs were collected and analyzed. The HPLC results showed significantly higher total flavonoid and anthocyanin contents in purple flowers compared to [...] Read more.
The formation of flower color is closely related to anthocyanin synthesis. In this study, flowers of Bletilla striata (Orchidaceae) exhibiting distinct color morphs were collected and analyzed. The HPLC results showed significantly higher total flavonoid and anthocyanin contents in purple flowers compared to pink counterparts, with increases of 2.20-fold (p < 0.01) and 15.22-fold (p < 0.01), respectively. Cyanidin was the predominant anthocyanin in B. striata. Resequencing analyses highlighted SNP as the primary variation associated with color divergence. A comprehensive screen identified 61 genes encoding enzymes critical to the flavonoid and anthocyanin biosynthesis pathways in B. striata. Among these, 16 flower-specific genes exhibited high expression levels and harbored SNP variations. Notably, a premature stop codon was identified in a gene encoding dihydroflavonol 4-reductase (DFR), leading to truncated protein synthesis and potential disruption of anthocyanin production. Further, the heterologous overexpression of BsDFR4 in Phalaenopsis aphrodite changed petal color from white to yellow-green, demonstrating that it indeed played a regulatory role in the formation of flower color. Furthermore, yeast one-hybrid assays confirmed that transcription factors BsMYB36 and BsMYB51 could directly bind to the BsDFR4 promoter, suggesting their synergistic regulation of anthocyanin biosynthesis. These results provided a conceptual basis for insights into the formation of different flower colors in Orchidaceae. Full article
(This article belongs to the Special Issue Molecular Research on Orchid Plants: 2nd Edition)
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25 pages, 5770 KiB  
Article
Comparative Transcriptome Analysis Reveals the Mechanism by Ethylene and 1-Methylcyclopropene Treatment on the Vase Life of Cut Oncidium hybridumHoney Angle
by Jingjing Kou, Xueqian Zang, Zirui Mo, Guangwei Wu, Bei Wang and Guopeng Zhu
Horticulturae 2025, 11(4), 386; https://doi.org/10.3390/horticulturae11040386 - 4 Apr 2025
Viewed by 700
Abstract
The cut flowers of the Oncidium hybridum cultivar ‘Honey Angle’ are highly regarded for their vibrant floral display, excellent flower quality, and broad commercial applications. However, its postharvest vase life is significantly challenged by wilting, water loss, and color fading, primarily [...] Read more.
The cut flowers of the Oncidium hybridum cultivar ‘Honey Angle’ are highly regarded for their vibrant floral display, excellent flower quality, and broad commercial applications. However, its postharvest vase life is significantly challenged by wilting, water loss, and color fading, primarily due to ethylene exposure. To clarify the underlying mechanism, we performed treatments with ethylene and ethylene action inhibitor 1-Methylcyclopropene (1-MCP). The petal changes, vase life, and transcriptomic analysis after treatments were investigated. The results revealed that the 1-MCP treatment significantly extended the vase life by upregulating the genes involved in carotenoid synthesis, suppressing the genes related to cell wall degradation and the ethylene signaling pathways. In contrast, the ethylene treatment accelerated senescence by activating the senescence-related genes and increasing ethylene production. Transcriptome analysis identified 960 transcription factors, predominantly from the NAC, WRKY, ERF, bHLH, and MYB families, which were crucial in regulating quality changes during the vase life. A total of 5203 differentially expressed genes (DEGs) were assigned to 19 KEGG pathways including carbohydrate and energy metabolism as well as plant hormone signal transduction. Weighted gene co-expression network analysis (WGCNA) indicated that these DEGs were primarily associated with weight loss, flowering ratio, lightness, maximum petal diameter, and respiration intensity. This research provided valuable insights into the molecular mechanisms of floral senescence and practical guidance for extending the vase life of ‘Honey Angle’ cut flowers. Full article
(This article belongs to the Section Postharvest Biology, Quality, Safety, and Technology)
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17 pages, 2942 KiB  
Article
Optimization of Ultrasound-Assisted Obtention of Bluish Anthocyanin Extracts from Butterfly Pea (Clitoria ternatea) Petal Powders Using Natural Deep Eutectic Solvents
by Nicole Marina Almeida Maia, Irene Andressa, Jeferson Silva Cunha, Nataly de Almeida Costa, Larissa Lorrane Rodrigues Borges, Edimar Aparecida Filomeno Fontes, Eduardo Basílio de Oliveira, Bruno Ricardo de Castro Leite Júnior, Leonardo Lopes Bhering, Marleny Doris Aranda Saldaña and Érica Nascif Rufino Vieira
Plants 2025, 14(7), 1042; https://doi.org/10.3390/plants14071042 - 27 Mar 2025
Cited by 1 | Viewed by 1182
Abstract
This study focused on improving the extraction of anthocyanins from medicinal plants using green solvents, which is important for the food, pharmaceuticals, and cosmetics industries. The goal was to optimize the time (15–50 min), temperature (40–80 °C), and petal/solvent ratio (2.5/7%) for the [...] Read more.
This study focused on improving the extraction of anthocyanins from medicinal plants using green solvents, which is important for the food, pharmaceuticals, and cosmetics industries. The goal was to optimize the time (15–50 min), temperature (40–80 °C), and petal/solvent ratio (2.5/7%) for the ultrasound-assisted extraction of anthocyanins from Butterfly Pea (Clitoria ternatea), using a natural deep eutectic solvent (choline chloride/glycerol, ChCl:Gly). The extraction was compared with a simple water extraction. To assess stability, we analyzed the anthocyanin content, antioxidant capacity, and color changes over 21 days. The optimal results were achieved using a temperature of 80 °C for 50 min and a 7% petal/solvent ratio. The CHCl:Gly solvent resulted in higher anthocyanin levels (374.65 mg DGE/L) compared to water (211.63 mg DGE/L). After storing the CHCl:Gly extract at 5 °C, only 16% of anthocyanins were lost, while the water extract lost 38%. The CHCl:Gly extract also showed better antioxidant capacity (156.43 µmol/mL). Color changes were less noticeable in the CHCl:Gly extract, especially when refrigerated. These findings demonstrate the method’s effectiveness for producing bioactive extracts, with potential for the food, pharmaceutical, and cosmetic industries. Full article
(This article belongs to the Special Issue Plant Extracts: Bioactive Substances and Active Ingredient)
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25 pages, 5627 KiB  
Article
Digital Repeat Photography Application for Flowering Stage Classification of Selected Woody Plants
by Monika A. Różańska, Kamila M. Harenda, Damian Józefczyk, Tomasz Wojciechowski and Bogdan H. Chojnicki
Sensors 2025, 25(7), 2106; https://doi.org/10.3390/s25072106 - 27 Mar 2025
Viewed by 432
Abstract
Digital repeat photography is currently applied mainly in geophysical studies of ecosystems. However, its role as a tool that can be utilized in conventional phenology, tracking a plant’s seasonal developmental cycle, is growing. This study’s main goal was to develop an easy-to-reproduce, single-camera-based [...] Read more.
Digital repeat photography is currently applied mainly in geophysical studies of ecosystems. However, its role as a tool that can be utilized in conventional phenology, tracking a plant’s seasonal developmental cycle, is growing. This study’s main goal was to develop an easy-to-reproduce, single-camera-based novel approach to determine the flowering phases of 12 woody plants of various deciduous species. Field observations served as binary class calibration datasets (flowering and non-flowering stages). All the image RGB parameters, designated for each plant separately, were used as plant features for the models’ parametrization. The training data were subjected to various transformations to achieve the best classifications using the weighted k-nearest neighbors algorithm. The developed models enabled the flowering classifications at the 0, 1, 2, 3, and 5 onset day shift (absolute values) for 2, 3, 3, 2, and 2 plants, respectively. For 9 plants, the presented method enabled the flowering duration estimation, which is a valuable yet rarely used parameter in conventional phenological studies. We found the presented method suitable for various plants, despite their petal color and flower size, until there is a considerable change in the crown color during the flowering stage. Full article
(This article belongs to the Section Environmental Sensing)
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16 pages, 24261 KiB  
Article
The Mutations in RcMYB114 Affect Anthocyanin Glycoside Accumulation in Rose
by Maofu Li, Yuan Yang, Hua Wang, Pei Sun, Shuting Zhou, Yanhui Kang, Xiangyi Sun, Min Jin and Wanmei Jin
Biology 2025, 14(3), 258; https://doi.org/10.3390/biology14030258 - 4 Mar 2025
Viewed by 1042
Abstract
In plants, the R2R3-MYB transcription factors are one of the largest MYB gene families. These MYB transcription factors are very important for regulating plant growth and development. RcMYB114, RcbHLH, and RcWD40 promote anthocyanin accumulation by forming the MBW (MYB-bHLH-WD40) complex and determine the [...] Read more.
In plants, the R2R3-MYB transcription factors are one of the largest MYB gene families. These MYB transcription factors are very important for regulating plant growth and development. RcMYB114, RcbHLH, and RcWD40 promote anthocyanin accumulation by forming the MBW (MYB-bHLH-WD40) complex and determine the rose flower’s color. RcMYB114 genomic sequences differ between the red petal and white varieties. Two non-synonymous substitutions were found in the open reading frame. It leads to a change in amino acids. Here, the anthocyanin content showed that there was no anthocyanin in white petals, while the anthocyanin content in red petals increased firstly at stage 2, decreased slightly at stage 4, and then increased again at stage 5. The spatiotemporal expression pattern analysis showed that RcMYB114 was not expressed in all petals and tissues of white petals at different flower development stages. In red petal varieties, RcMYB114 was highly expressed in petals, followed by styles, and not expressed in stems, young leaves, and stage 1 of flower development. However, RcMYB114 has the highest expression level at the blooming stage. The RcMYB114 sequence contains 9 SNPs in the coding region, 7 of which were synonymous substitutions that had no effect on the translation product and 2 of which were non-synonymous substitutions that resulted in amino acid alteration at positions 116 and 195, respectively. The RcMYB114 gene in red rose was named RcMYB114a, and in white rose was RcMYB114b. RcMYB114c was mutated into leucine via artificial mutation; it was valine at position 116 of RcMYB114a, and Glycine mutated into Arginine at position 195 of RcMYB114a was RcMYB114d. RcMYB114b was the double mutation at positions 116 and 195 of RcMYB114a. The results of yeast two-hybrid experiments showed that RcMYB114a and its missense mutations RcMYB114b, RcMYB114c, and RcMYB114d could both interact with RcbHLH and RcWD40 to form the MYB-bHLH-WD40 complex. A transient transformation experiment in tobacco confirmed that RcMYB114a and its missense mutations RcMYB114b, RcMYB114c, and RcMYB114d could significantly promote the high expression of related structural genes in tobacco, together with the RcbHLH gene, which led to the accumulation of anthocyanins and produced the red color of the leaves. The RcMYB114a gene and its missense mutations RcMYB114b, RcMYB114c, and RcMYB114d interacted with the RcbHLH gene and significantly regulated the accumulation of anthocyanins. The two non-synonymous mutations of RcMYB114 do not affect the function of the gene itself, but the content of the anthocyanins accumulated was different. This study should provide clues and references for further research on the molecular mechanism underlying the determination of rose petal color. Full article
(This article belongs to the Special Issue Recent Advances in Biosynthesis and Degradation of Plant Anthocyanin)
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17 pages, 5102 KiB  
Article
Molecular, Metabolic, and Physiological Responses to Progressive Biotic Stress Caused by Cucumber Mosaic Virus and Turnip Mosaic Virus in Saffron
by Marzieh Shamshiri, Conchi Sánchez, Saleta Rico, Ali Mokhtassi-Bidgoli, Mahdi Ayyari, Hassan Rezadoost and Masoud Shams-Bakhsh
Horticulturae 2025, 11(1), 96; https://doi.org/10.3390/horticulturae11010096 - 16 Jan 2025
Cited by 1 | Viewed by 1291
Abstract
The economic value of the saffron stigma is primarily due to three crucial apocarotenoids: crocin, picrocrocin, and safranal, which contribute to its color, flavor, and aroma. These compounds make saffron highly valuable in various industries. Plant viruses like the cucumber mosaic virus (CMV) [...] Read more.
The economic value of the saffron stigma is primarily due to three crucial apocarotenoids: crocin, picrocrocin, and safranal, which contribute to its color, flavor, and aroma. These compounds make saffron highly valuable in various industries. Plant viruses like the cucumber mosaic virus (CMV) and turnip mosaic virus (TuMV) are significant threats to agricultural crops worldwide, causing economic losses. To elucidate the influence of viral stress on the quality of saffron, morphological, physiological, biochemical, and molecular indexes were assessed. Under the stress of both viruses, typical viral symptoms appeared. The lowest contents of leaf pigments, flowering performance, petal anthocyanin, greenness, and photosynthesis properties were observed in plants infected with CMV and TuMV. According to high-performance liquid chromatography (HPLC) analysis, CMV inoculation led to the highest reduction in crocin and safranal content, while inducing the highest increase in picrocrocin compared to the mock treatment. Gene expression analysis involved in the biosynthesis of crucial secondary metabolites showed a high correlation with the content of each metabolite. CMV inoculation resulted in the lowest expression of CsALDH31l and the highest expression of CsUGT709G1 compared with the mock treatment. Our findings demonstrate the association between virus stress and changes in the metabolism of the saffron medicinal plant. Full article
(This article belongs to the Special Issue Biotic and Abiotic Stress Responses of Horticultural Plants)
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19 pages, 18851 KiB  
Article
Analysis of Transcriptional and Metabolic Differences in the Petal Color Change Response to High-Temperature Stress in Various Chrysanthemum Genotypes
by Zhimei Li, Hougao Zhou, Yan Chen, Minyi Chen, Yutong Yao, Honghui Luo, Qing Wu, Fenglan Wang and Yiwei Zhou
Agronomy 2024, 14(12), 2863; https://doi.org/10.3390/agronomy14122863 - 30 Nov 2024
Cited by 4 | Viewed by 1112
Abstract
Flower color is one of the most important ornamental traits of chrysanthemums. Previous studies have shown that high temperatures can cause the petals of some chrysanthemum varieties to fade; however, the molecular mechanisms behind this phenomenon remain poorly understood. This study examines the [...] Read more.
Flower color is one of the most important ornamental traits of chrysanthemums. Previous studies have shown that high temperatures can cause the petals of some chrysanthemum varieties to fade; however, the molecular mechanisms behind this phenomenon remain poorly understood. This study examines the mechanisms of color change in purple chrysanthemums under high-temperature stress using combined metabolomic and transcriptomic analyses. Four chrysanthemum varieties—two heat-stable (‘Zi Feng Che’ and ‘Chrystal Regal’) and two heat-sensitive (‘Zi Hong Tuo Gui’ and ‘Zi Lian’)—were analyzed. High-temperature conditions (35 °C) significantly downregulated key anthocyanins in heat-sensitive varieties, particularly cyanidin-3-O-(3″,6″-O-dimalonyl)glucoside and pelargonidin-3-O-(3″,6″-O-dimalonyl)glucoside. Transcriptome analysis revealed differential gene expression involved in anthocyanin biosynthesis and degradation, with significant enrichment in the MAPK signaling, phenylpropanoid biosynthesis, flavonoid biosynthesis, and anthocyanin biosynthesis pathways. The study highlighted the differential expression of CHS, DFR, ANS, GT1, 3AT, and UGT75C1 genes in anthocyanin synthesis between heat-sensitive and heat-tolerant varieties. Compared to heat-stable varieties, the petals of heat-sensitive varieties exhibited greater differential expression of heat-responsive transcription factors, including HSFs, ERFs, MYBs, and WRKYs. Genes that show a significant negative correlation with the downregulated anthocyanins, including Cse_sc012959.1_g030.1 (βG), Cse_sc001798.1_g020.1 (MYB), Cse_sc006944.1_g010.1 (MYB), and Cse_sc000572.1_g090.1 (HSF), might regulate anthocyanin accumulation in chrysanthemums in response to high-temperature stress. These results provide guidance for the cultivation management and variety selection of chrysanthemums under high-temperature conditions. Additionally, they lay the foundation for elucidating the molecular mechanisms of flower color stability under heat stress and for breeding new heat-tolerant varieties. Full article
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14 pages, 3444 KiB  
Article
Classification of Vase Life Day Based on Petal Colorimetric Data in Cut Lisianthus Using AutoML
by Hye Sook Kwon and Seong Heo
Horticulturae 2024, 10(10), 1033; https://doi.org/10.3390/horticulturae10101033 - 29 Sep 2024
Cited by 2 | Viewed by 1519
Abstract
This study investigated the potential of petal colorimetric data to classify vase life stages in cut lisianthus flowers (Eustoma grandiflorum). We analyzed the changes in the petal color space over time, focusing on the b* value as an indicator of senescence [...] Read more.
This study investigated the potential of petal colorimetric data to classify vase life stages in cut lisianthus flowers (Eustoma grandiflorum). We analyzed the changes in the petal color space over time, focusing on the b* value as an indicator of senescence due to increasing yellowing caused by copigmentation. A comparative analysis was conducted between two cultivation methods: soil (S) and hydroponic (H) cultivation. The objective was to evaluate the performance of machine learning models trained to classify vase life stages based on petal color data. Automated machine learning models exhibited better performance in H-cultivated cut flowers, effectively distinguishing days within the vase life stages from Days 1 to 14 for H cultivation. Cut flowers cultivated under S conditions showed less variation in the color space from Days 1 to 9, maintaining a relatively uniform color range. This made it more difficult to distinguish the vase life stages compared to H cultivation. These findings demonstrate that petal color metrics can serve as reliable indicators of cut flower senescence and potentially facilitate nondestructive methods for classifying vase life stages. This technology holds promise for wider applications in the floriculture industry, improving quality control, and extending the vase life of various cut-flower crops. Full article
(This article belongs to the Special Issue Propagation and Flowering of Ornamental Plants)
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10 pages, 1381 KiB  
Article
Mutagenesis and Flowering Promotion through Sodium Azide In Vitro Culture of Cymbidium faberi Rolfe
by Zhengjing Wu, Sujuan Liu, Bingjie An, Hao Zhang, Jingjing Wu, Chenfang Li and Yuan Long
Horticulturae 2024, 10(8), 889; https://doi.org/10.3390/horticulturae10080889 - 22 Aug 2024
Cited by 3 | Viewed by 1181
Abstract
Cymbidium faberi Rolfe is one of the traditional Chinese orchids with important ornamental value, and the cultivation of Cymbidium faberi Rolfe mutant strains with different appearances is essential to increase its economic value. However, at present, their acquisition largely relies on natural mutation. [...] Read more.
Cymbidium faberi Rolfe is one of the traditional Chinese orchids with important ornamental value, and the cultivation of Cymbidium faberi Rolfe mutant strains with different appearances is essential to increase its economic value. However, at present, their acquisition largely relies on natural mutation. The objectives of this research were to mutagenize Cymbidium faberi Rolfe protocorm-like bodies (PLBs) and shoots in vitro using sodium azide (NaN3) and to screen and evaluate mutants in the mutagenized seedlings using morphological characteristics. Cymbidium faberi Rolfe PLBs and shoots were used as mutagenic materials. Mutations were induced by the addition of 0.0 (control), 0.5, 1.0, 1.5, 2.0, 2.5, and 3.0 mg·L−1 and 0.0 (control), 4.0, 5.0, 6.0, 7.0, 8.0, 9.0, and 10.0 mg·L−1 NaN3 to a shoot-growth-inducing medium. The mortality rates of the PLBs and shoots increased with an increase in the NaN3 concentration. At 14 d of co-cultivation, the PLBs and shoots were most efficiently mutagenized with 1.5 mg·L−1 and 4.0 mg·L−1 NaN3, respectively. After the explants were cultured for 3 months, changes in leaf and flower morphology were observed in some mutants: shorter and thicker leaves, shorter node length, reduced height, and mid-translucent leaves compared with controls. Some Cymbidium faberi Rolfe bloomed prematurely, with single flowers with large, thick petal sepals and small inflorescences. Colors included light green throughout, with some exhibiting purple stamens. This suggests that NaN3 can effectively mutagenize Cymbidium faberi Rolfe PLBs and shoots to satisfy people’s demand for this plant’s ornamental properties while increasing its economic value. Full article
(This article belongs to the Section Floriculture, Nursery and Landscape, and Turf)
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14 pages, 2257 KiB  
Review
Methylation Modification in Ornamental Plants: Impact on Floral Aroma and Color
by Chenchen Xie, Qingyin Tian, Hanruo Qiu, Rui Wang, Lianggui Wang, Yuanzheng Yue and Xiulian Yang
Int. J. Mol. Sci. 2024, 25(15), 8267; https://doi.org/10.3390/ijms25158267 - 29 Jul 2024
Cited by 3 | Viewed by 1668
Abstract
Methylation represents a crucial class of modification that orchestrates a spectrum of regulatory roles in plants, impacting ornamental characteristics, growth, development, and responses to abiotic stress. The establishment and maintenance of methylation involve the coordinated actions of multiple regulatory factors. Methyltransferases play a [...] Read more.
Methylation represents a crucial class of modification that orchestrates a spectrum of regulatory roles in plants, impacting ornamental characteristics, growth, development, and responses to abiotic stress. The establishment and maintenance of methylation involve the coordinated actions of multiple regulatory factors. Methyltransferases play a pivotal role by specifically recognizing and methylating targeted sites, which induces alterations in chromatin structure and gene expression, subsequently influencing the release of volatile aromatic substances and the accumulation of pigments in plant petals. In this paper, we review the regulatory mechanisms of methylation modification reactions and their effects on the changes in aromatic substances and pigments in plant petals. We also explore the potential of methylation modifications to unravel the regulatory mechanisms underlying aroma and color in plant petals. This aims to further elucidate the synthesis, metabolism, and regulatory mechanisms of various methylation modifications related to the aroma and color substances in plant petals, thereby providing a theoretical reference for improving the aroma and color of plant petals. Full article
(This article belongs to the Special Issue The Biochemistry, Molecular and Cell Biology Beyond Flowers)
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19 pages, 3861 KiB  
Article
Integrated Metabolomics and Transcriptomics Reveal the Key Role of Flavonoids in the Cold Tolerance of Chrysanthemum
by Di Wu, Yingxue Wu, Ruiqi Gao, Yanhong Zhang, Ruiying Zheng, Minghui Fang, Yuhua Li, Yang Zhang, Le Guan and Yanqiang Gao
Int. J. Mol. Sci. 2024, 25(14), 7589; https://doi.org/10.3390/ijms25147589 - 10 Jul 2024
Cited by 7 | Viewed by 1778
Abstract
Chrysanthemum (Chrysanthemum morifolium, ground-cover Chrysanthemums), one of the important garden flowers, has a high ornamental and economic value. However, its ornamental value is significantly diminished by the low temperature experienced in northeastern China. Here, metabolomics and transcriptomics were performed on three [...] Read more.
Chrysanthemum (Chrysanthemum morifolium, ground-cover Chrysanthemums), one of the important garden flowers, has a high ornamental and economic value. However, its ornamental value is significantly diminished by the low temperature experienced in northeastern China. Here, metabolomics and transcriptomics were performed on three Chrysanthemum cultivars before and after a low temperature to investigate the dynamic metabolite changes and the molecular regulatory mechanisms. The results showed that 1324 annotated metabolites were detected, among which 327 were identified as flavonoids derived from Chrysanthemum. The accumulation of metabolites and gene expression related to the flavonoid biosynthesis pathway significantly increased in the three cultivars under the low temperature, indicating flavonoid metabolism actively participates in the Chrysanthemum cold response. Specifically, the content of cyanidin and pelargonidin derivatives and the expression of anthocyanin biosynthesis genes significantly increases in XHBF, providing a reasonable explanation for the change in petal color from white to purple under the low temperature. Six candidate UDP-glycosyltransferase genes involved in the glycosylation of flavonoids were identified through correlation networks and phylogenetic analysis. CmNAC1, CmbZIP3, and other transcription factors potentially regulating flavonoid metabolism and responding to low temperatures were discovered by correlation analysis and weighted gene co-expression network analysis (WGCNA). In conclusion, this study elucidated the specific response of flavonoids to low temperatures in Chrysanthemums, providing valuable insights and metabolic data for investigating cold tolerance. Full article
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14 pages, 5170 KiB  
Article
Bulk Segregant Analysis Sequencing and RNA-Seq Analyses Reveal Candidate Genes Associated with Sepal Color Phenotype of Eggplant (Solanum melongena L.)
by Benqi Wang, Xia Chen, Shuping Huang, Jie Tan, Hongyuan Zhang, Junliang Wang, Rong Chen and Min Zhang
Plants 2024, 13(10), 1385; https://doi.org/10.3390/plants13101385 - 16 May 2024
Cited by 2 | Viewed by 1608
Abstract
Eggplant is a highly significant vegetable crop and extensively cultivated worldwide. Sepal color is considered one of the major commercial traits of eggplant. Eggplant sepals develop from petals, and sepals have the ability to change color by accumulating anthocyanins, but whether the eggplants [...] Read more.
Eggplant is a highly significant vegetable crop and extensively cultivated worldwide. Sepal color is considered one of the major commercial traits of eggplant. Eggplant sepals develop from petals, and sepals have the ability to change color by accumulating anthocyanins, but whether the eggplants in sepal and their biosynthetic pathways are the same as those in petals is not known. To date, little is known about the underlying mechanisms of sepal color formation. In this study, we performed bulked segregant analysis and transcriptome sequencing using eggplant sepals and obtained 1,452,898 SNPs and 182,543 InDel markers, respectively, as well as 123.65 Gb of clean data using transcriptome sequencing. Through marker screening, the genes regulating eggplant sepals were localized to an interval of 2.6 cM on chromosome 10 by bulked segregant analysis sequencing and transcriptome sequencing and co-analysis, combined with screening of molecular markers by capillary electrophoresis. Eight possible candidate genes were then screened to further interpret the regulatory incentives for the eggplant sepal color. Full article
(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
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16 pages, 16398 KiB  
Article
An R2R3-MYB Transcriptional Factor LuMYB314 Associated with the Loss of Petal Pigmentation in Flax (Linum usitatissimum L.)
by Dongliang Guo, Haixia Jiang and Liqiong Xie
Genes 2024, 15(4), 511; https://doi.org/10.3390/genes15040511 - 18 Apr 2024
Cited by 1 | Viewed by 1735
Abstract
The loss of anthocyanin pigments is one of the most common evolutionary transitions in petal color, yet the genetic basis for these changes in flax remains largely unknown. In this study, we used crossing studies, a bulk segregant analysis, genome-wide association studies, a [...] Read more.
The loss of anthocyanin pigments is one of the most common evolutionary transitions in petal color, yet the genetic basis for these changes in flax remains largely unknown. In this study, we used crossing studies, a bulk segregant analysis, genome-wide association studies, a phylogenetic analysis, and transgenic testing to identify genes responsible for the transition from blue to white petals in flax. This study found no correspondence between the petal color and seed color, refuting the conclusion that a locus controlling the seed coat color is associated with the petal color, as reported in previous studies. The locus controlling the petal color was mapped using a BSA-seq analysis based on the F2 population. However, no significantly associated genomic regions were detected. Our genome-wide association study identified a highly significant QTL (BP4.1) on chromosome 4 associated with flax petal color in the natural population. The combination of a local Manhattan plot and an LD heat map identified LuMYB314, an R2R3-MYB transcription factor, as a potential gene responsible for the natural variations in petal color in flax. The overexpression of LuMYB314 in both Arabidopsis thaliana and Nicotiana tabacum resulted in anthocyanin deposition, indicating that LuMYB314 is a credible candidate gene for controlling the petal color in flax. Additionally, our study highlights the limitations of the BSA-seq method in low-linkage genomic regions, while also demonstrating the powerful detection capabilities of GWAS based on high-density genomic variation mapping. This study enhances our genetic insight into petal color variations and has potential breeding value for engineering LuMYB314 to develop colored petals, bast fibers, and seeds for multifunctional use in flax. Full article
(This article belongs to the Special Issue Advances in Genetics and Genomics of Plants)
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13 pages, 2851 KiB  
Article
Impact of Dry Processing on Secondary Metabolites in the Petals of Marigold (Tagetes spp.) Cultivar
by Ji Hye Kim, You Jin Lim, Jae-Hee Kim and Seok Hyun Eom
Horticulturae 2024, 10(4), 382; https://doi.org/10.3390/horticulturae10040382 - 9 Apr 2024
Cited by 4 | Viewed by 2349
Abstract
The edible flowers of marigold (Tagetes spp.) are cultivated for their aesthetic appeal and high utility as functional health food ingredients. Carotenoid and flavonoid contents in marigold petals highlight the importance of selecting the appropriate cultivar and its processing methods for their [...] Read more.
The edible flowers of marigold (Tagetes spp.) are cultivated for their aesthetic appeal and high utility as functional health food ingredients. Carotenoid and flavonoid contents in marigold petals highlight the importance of selecting the appropriate cultivar and its processing methods for their industrial applications. The comparative understanding of the effects of dry processing on functional components across different marigold cultivars is still lacking. Therefore, this study investigated functional compound changes in the dry processing effect on four marigold cultivars with distinct flower shapes (Durango, Inca) and colors (yellow, orange). The petals in hot air drying (HAD) with 30, 60, and 90 °C applications were analyzed for the measurement of their individual secondary metabolite contents, total phenolic and flavonoid contents, and antioxidant activities. In freeze drying (FD), the lutein content varied significantly based on flower color, exhibiting higher levels in cultivars with orange petals. Otherwise, the levels of quercetin derivatives displayed distinct differences based on varieties other than color, with Inca cultivars demonstrating higher levels of quercetin 7-O-glucoside (Q7G) than Durango cultivars. In HAD, the lutein levels show a tendency to increase above 60 °C regardless of the cultivar. The content of quercetin glycosides decreased, while the aglycone increased in HAD treatments, regardless of the temperatures. Correlation and PCA results highlighted the impact of phenol compounds on antioxidant activity. Overall, these findings underscore the significance of variety and color in determining the chemical composition and antioxidant properties of marigold flowers. Full article
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21 pages, 6926 KiB  
Article
Multi-Omics Analysis Reveals That Anthocyanin Degradation and Phytohormone Changes Regulate Red Color Fading in Rapeseed (Brassica napus L.) Petals
by Lan Huang, Baogang Lin, Pengfei Hao, Kaige Yi, Xi Li and Shuijin Hua
Int. J. Mol. Sci. 2024, 25(5), 2577; https://doi.org/10.3390/ijms25052577 - 23 Feb 2024
Cited by 8 | Viewed by 2618
Abstract
Flower color is an important trait for the ornamental value of colored rapeseed (Brassica napus L.), as the plant is becoming more popular. However, the color fading of red petals of rapeseed is a problem for its utilization. Unfortunately, the mechanism for [...] Read more.
Flower color is an important trait for the ornamental value of colored rapeseed (Brassica napus L.), as the plant is becoming more popular. However, the color fading of red petals of rapeseed is a problem for its utilization. Unfortunately, the mechanism for the process of color fading in rapeseed is unknown. In the current study, a red flower line, Zhehuhong, was used as plant material to analyze the alterations in its morphological and physiological characteristics, including pigment and phytohormone content, 2 d before flowering (T1), at flowering (T2), and 2 d after flowering (T3). Further, metabolomics and transcriptomics analyses were also performed to reveal the molecular regulation of petal fading. The results show that epidermal cells changed from spherical and tightly arranged to totally collapsed from T1 to T3, according to both paraffin section and scanning electron microscope observation. The pH value and all pigment content except flavonoids decreased significantly during petal fading. The anthocyanin content was reduced by 60.3% at T3 compared to T1. The content of three phytohormones, 1-aminocyclopropanecarboxylic acid, melatonin, and salicylic acid, increased significantly by 2.2, 1.1, and 30.3 times, respectively, from T1 to T3. However, auxin, abscisic acid, and jasmonic acid content decreased from T1 to T3. The result of metabolomics analysis shows that the content of six detected anthocyanin components (cyanidin, peonidin, pelargonidin, delphinidin, petunidin, and malvidin) and their derivatives mainly exhibited a decreasing trend, which was in accordance with the trend of decreasing anthocyanin. Transcriptomics analysis showed downregulation of genes involved in flavonol, flavonoid, and anthocyanin biosynthesis. Furthermore, genes regulating anthocyanin biosynthesis were preferentially expressed at early stages, indicating that the degradation of anthocyanin is the main issue during color fading. The corresponding gene-encoding phytohormone biosynthesis and signaling, JASMONATE-ZIM-DOMAIN PROTEIN, was deactivated to repress anthocyanin biosynthesis, resulting in fading petal color. The results clearly suggest that anthocyanin degradation and phytohormone regulation play essential roles in petal color fading in rapeseed, which is a useful insight for the breeding of colored rapeseed. Full article
(This article belongs to the Special Issue Advanced Research of Plant Secondary Metabolism)
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