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Keywords = neuromarkers

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17 pages, 868 KB  
Review
Neuromarkers of Adaptive Neuroplasticity and Cognitive Resilience Across Aging: A Multimodal Integrative Review
by Jordana Mariane Neyra Chauca, Manuel de Jesús Ornelas Sánchez, Nancy García Quintana, Karen Lizeth Martín del Campo Márquez, Brenda Areli Carvajal Juarez, Nancy Rojas Mendoza and Martha Ayline Aguilar Díaz
Neurol. Int. 2026, 18(1), 10; https://doi.org/10.3390/neurolint18010010 - 5 Jan 2026
Cited by 3 | Viewed by 3301
Abstract
Background: Aging is traditionally characterized by progressive structural and cognitive decline; however, increasing evidence shows that the aging brain retains a remarkable capacity for reorganization. This adaptive neuroplasticity supports cognitive resilience—defined as the ability to maintain efficient cognitive performance despite age-related neural vulnerability. [...] Read more.
Background: Aging is traditionally characterized by progressive structural and cognitive decline; however, increasing evidence shows that the aging brain retains a remarkable capacity for reorganization. This adaptive neuroplasticity supports cognitive resilience—defined as the ability to maintain efficient cognitive performance despite age-related neural vulnerability. Objective: To synthesize current molecular, cellular, neuroimaging, and electrophysiological neuromarkers that characterize adaptive neuroplasticity and to examine how these mechanisms contribute to cognitive resilience across aging. Methods: This narrative review integrates findings from molecular neuroscience, multimodal neuroimaging (fMRI, DTI, PET), electrophysiology (EEG, MEG, TMS), and behavioral research to outline multiscale biomarkers associated with compensatory and efficient neural reorganization in older adults. Results: Adaptive neuroplasticity emerges from the coordinated interaction of neurotrophic signaling (BDNF, CREB, IGF-1), glial modulation (astrocytic lactate metabolism, regulated microglial activity), synaptic remodeling, and neurovascular support (VEGF, nitric oxide). Multimodal neuromarkers—including preserved frontoparietal connectivity, DMN–FPCN coupling, synaptic density (SV2A-PET), theta–gamma coherence, and LTP-like excitability—consistently correlate with resilience in executive functions, memory, and processing speed. Behavioral enrichment, physical activity, and cognitive training further enhance these biomarkers, creating a bidirectional loop between experience and neural adaptability. Conclusions: Adaptive neuroplasticity represents a fundamental mechanism through which older adults maintain cognitive function despite biological aging. Integrating molecular, imaging, electrophysiological, and behavioral neuromarkers provides a comprehensive framework to identify resilience trajectories and to guide personalized interventions aimed at preserving cognition. Understanding these multilevel adaptive mechanisms reframes aging not as passive decline but as a dynamic continuum of biological compensation and cognitive preservation. Full article
(This article belongs to the Section Aging Neuroscience)
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19 pages, 5346 KB  
Article
Metastable Substructure Embedding and Robust Classification of Multichannel EEG Data Using Spectral Graph Kernels
by Rashmi N. Muralinath, Vishwambhar Pathak and Prabhat K. Mahanti
Future Internet 2025, 17(3), 102; https://doi.org/10.3390/fi17030102 - 23 Feb 2025
Cited by 2 | Viewed by 1498
Abstract
Classification of neurocognitive states from Electroencephalography (EEG) data is complex due to inherent challenges such as noise, non-stationarity, non-linearity, and the high-dimensional and sparse nature of connectivity patterns. Graph-theoretical approaches provide a powerful framework for analysing the latent state dynamics using connectivity measures [...] Read more.
Classification of neurocognitive states from Electroencephalography (EEG) data is complex due to inherent challenges such as noise, non-stationarity, non-linearity, and the high-dimensional and sparse nature of connectivity patterns. Graph-theoretical approaches provide a powerful framework for analysing the latent state dynamics using connectivity measures across spatio-temporal-spectral dimensions. This study applies the graph Koopman embedding kernels (GKKE) method to extract latent neuro-markers of seizures from epileptiform EEG activity. EEG-derived graphs were constructed using correlation and mean phase locking value (mPLV), with adjacency matrices generated via threshold-binarised connectivity. Graph kernels, including Random Walk, Weisfeiler–Lehman (WL), and spectral-decomposition (SD) kernels, were evaluated for latent space feature extraction by approximating Koopman spectral decomposition. The potential of graph Koopman embeddings in identifying latent metastable connectivity structures has been demonstrated with empirical analyses. The robustness of these features was evaluated using classifiers such as Decision Trees, Support Vector Machine (SVM), and Random Forest, on Epilepsy-EEG from the Children’s Hospital Boston’s (CHB)-MIT dataset and cognitive-load-EEG datasets from online repositories. The classification workflow combining mPLV connectivity measure, WL graph Koopman kernel, and Decision Tree (DT) outperformed the alternative combinations, particularly considering the accuracy (91.7%) and F1-score (88.9%), The comparative investigation presented in results section convinces that employing cost-sensitive learning improved the F1-score for the mPLV-WL-DT workflow to 91% compared to 88.9% without cost-sensitive learning. This work advances EEG-based neuro-marker estimation, facilitating reliable assistive tools for prognosis and cognitive training protocols. Full article
(This article belongs to the Special Issue eHealth and mHealth)
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17 pages, 6852 KB  
Article
Predictive Neuromarker Patterns for Calcification Metaplasia in Early Tendon Healing
by Melisa Faydaver, Valeria Festinese, Oriana Di Giacinto, Mohammad El Khatib, Marcello Raspa, Ferdinando Scavizzi, Fabrizio Bonaventura, Valentina Mastrorilli, Paolo Berardinelli, Barbara Barboni and Valentina Russo
Vet. Sci. 2024, 11(9), 441; https://doi.org/10.3390/vetsci11090441 - 19 Sep 2024
Cited by 1 | Viewed by 2385
Abstract
Unsuccessful tendon healing leads to fibrosis and occasionally calcification. In these metaplastic drifts, the mouse AT preclinical injury model represents a robust experimental setting for studying tendon calcifications. Previously, calcium deposits were found in about 30% of tendons after 28 days post-injury. Although [...] Read more.
Unsuccessful tendon healing leads to fibrosis and occasionally calcification. In these metaplastic drifts, the mouse AT preclinical injury model represents a robust experimental setting for studying tendon calcifications. Previously, calcium deposits were found in about 30% of tendons after 28 days post-injury. Although a neuromediated healing process has previously been documented, the expression patterns of NF200, NGF, NPY, GAL, and CGRP in mouse AT and their roles in metaplastic calcific repair remain to be explored. This study included a spatiotemporal analysis of these neuromarkers during the inflammatory phase (7 days p.i.) and the proliferative/early-remodelling phase (28 days p.i.). While the inflammatory phase is characterised by NF200 and CGRP upregulation, in the 28 days p.i., the non-calcified tendons (n = 16/24) showed overall NGF, NPY, GAL, and CGRP upregulation (compared to 7 days post-injury) and a return of NF200 expression to values similar to pre-injury. Presenting a different picture, in calcified tendons (n = 8), NF200 persisted at high levels, while NGF and NPY significantly increased, resulting in a higher NPY/CGRP ratio. Therefore, high levels of NF200 and imbalance between vasoconstrictive (NPY) and vasodilatory (CGRP) neuromarkers may be indicative of calcification. Tendon cells contributed to the synthesis of neuromarkers, suggesting that their neuro-autocrine/paracrine role is exerted by coordinating growth factors, cytokines, and neuropeptides. These findings offer insights into the neurobiological mechanisms of early tendon healing and identify new neuromarker profiles predictive of tendon healing outcomes. Full article
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16 pages, 31693 KB  
Article
A Dynamic Entropy Approach Reveals Reduced Functional Network Connectivity Trajectory Complexity in Schizophrenia
by David Sutherland Blair, Robyn L. Miller and Vince D. Calhoun
Entropy 2024, 26(7), 545; https://doi.org/10.3390/e26070545 - 26 Jun 2024
Cited by 8 | Viewed by 3478
Abstract
Over the past decade and a half, dynamic functional imaging has revealed low-dimensional brain connectivity measures, identified potential common human spatial connectivity states, tracked the transition patterns of these states, and demonstrated meaningful transition alterations in disorders and over the course of development. [...] Read more.
Over the past decade and a half, dynamic functional imaging has revealed low-dimensional brain connectivity measures, identified potential common human spatial connectivity states, tracked the transition patterns of these states, and demonstrated meaningful transition alterations in disorders and over the course of development. Recently, researchers have begun to analyze these data from the perspective of dynamic systems and information theory in the hopes of understanding how these dynamics support less easily quantified processes, such as information processing, cortical hierarchy, and consciousness. Little attention has been paid to the effects of psychiatric disease on these measures, however. We begin to rectify this by examining the complexity of subject trajectories in state space through the lens of information theory. Specifically, we identify a basis for the dynamic functional connectivity state space and track subject trajectories through this space over the course of the scan. The dynamic complexity of these trajectories is assessed along each dimension of the proposed basis space. Using these estimates, we demonstrate that schizophrenia patients display substantially simpler trajectories than demographically matched healthy controls and that this drop in complexity concentrates along specific dimensions. We also demonstrate that entropy generation in at least one of these dimensions is linked to cognitive performance. Overall, the results suggest great value in applying dynamic systems theory to problems of neuroimaging and reveal a substantial drop in the complexity of schizophrenia patients’ brain function. Full article
(This article belongs to the Special Issue Entropy Application in Biomechanics and Biosignal Processing)
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12 pages, 523 KB  
Article
The Importance of Increased Serum GFAP and UCH-L1 Levels in Distinguishing Large Vessel from Small Vessel Occlusion in Acute Ischemic Stroke
by Ivan Kraljević, Sara Sablić, Maja Marinović Guić, Danijela Budimir Mršić, Ivana Štula, Krešimir Dolić, Benjamin Benzon, Vana Košta, Krešimir Čaljkušić, Marino Marčić, Daniela Šupe Domić and Sanja Lovrić Kojundžić
Biomedicines 2024, 12(3), 608; https://doi.org/10.3390/biomedicines12030608 - 7 Mar 2024
Cited by 8 | Viewed by 3057
Abstract
Acute ischemic stroke (AIS) is one of the leading causes of morbidity worldwide, thus, early recognition is essential to accelerate treatment. The only definite way to diagnose AIS is radiological imaging, which is limited to hospitals. However, two serum neuromarkers, glial fibrillary acidic [...] Read more.
Acute ischemic stroke (AIS) is one of the leading causes of morbidity worldwide, thus, early recognition is essential to accelerate treatment. The only definite way to diagnose AIS is radiological imaging, which is limited to hospitals. However, two serum neuromarkers, glial fibrillary acidic protein (GFAP) and ubiquitin C-terminal hydrolase-L1 (UCH-L1), have been proven as indicators of brain trauma and AIS. We aimed to investigate the potential utility of these markers in distinguishing between large vessel occlusion (LVO) and small vessel occlusion (SVO), considering differences in treatment. Sixty-nine AIS patients were included in our study and divided into LVO and SVO groups based on radiological imaging. Control group consisted of 22 participants without history of neurological disorders. Results showed differences in serum levels of both GFAP and UHC-L1 between all groups; control vs. SVO vs. LVO (GFAP: 30.19 pg/mL vs. 58.6 pg/mL vs. 321.3 pg/mL; UCH-L1: 117.7 pg/mL vs. 251.8 pg/mL vs. 573.1 pg/mL; p < 0.0001), with LVO having the highest values. Other prognostic factors of stroke severity were analyzed and did not correlate with serum biomarkers. In conclusion, a combination of GFAP and UCH-L1 could potentially be a valuable diagnostic tool for differentiating LVO and SVO in AIS patients. Full article
(This article belongs to the Special Issue Advanced Research on Cerebrovascular Diseases)
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17 pages, 14112 KB  
Article
Intra-Atlas Node Size Effects on Graph Metrics in fMRI Data: Implications for Alzheimer’s Disease and Cognitive Impairment
by Sahithi Kolla, Haleh Falakshahi, Anees Abrol, Zening Fu and Vince D. Calhoun
Sensors 2024, 24(3), 814; https://doi.org/10.3390/s24030814 - 26 Jan 2024
Cited by 2 | Viewed by 2812
Abstract
Network neuroscience, a multidisciplinary field merging insights from neuroscience and network theory, offers a profound understanding of neural network intricacies. However, the impact of varying node sizes on computed graph metrics in neuroimaging data remains underexplored. This study addresses this gap by adopting [...] Read more.
Network neuroscience, a multidisciplinary field merging insights from neuroscience and network theory, offers a profound understanding of neural network intricacies. However, the impact of varying node sizes on computed graph metrics in neuroimaging data remains underexplored. This study addresses this gap by adopting a data-driven methodology to delineate functional nodes and assess their influence on graph metrics. Using the Neuromark framework, automated independent component analysis is applied to resting state fMRI data, capturing functional network connectivity (FNC) matrices. Global and local graph metrics reveal intricate connectivity patterns, emphasizing the need for nuanced analysis. Notably, node sizes, computed based on voxel counts, contribute to a novel metric termed ‘node-metric coupling’ (NMC). Correlations between graph metrics and node dimensions are consistently observed. The study extends its analysis to a dataset comprising Alzheimer’s disease, mild cognitive impairment, and control subjects, showcasing the potential of NMC as a biomarker for brain disorders. The two key outcomes underscore the interplay between node sizes and resultant graph metrics within a given atlas, shedding light on an often-overlooked source of variability. Additionally, the study highlights the utility of NMC as a valuable biomarker, emphasizing the necessity of accounting for node sizes in future neuroimaging investigations. This work contributes to refining comparative studies employing diverse atlases and advocates for thoughtful consideration of intra-atlas node size in shaping graph metrics, paving the way for more robust neuroimaging research. Full article
(This article belongs to the Section Intelligent Sensors)
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21 pages, 2205 KB  
Article
Translation into Clinical Practice of the G1-G7 Molecular Subgroup Classification of Glioblastoma: Comprehensive Demographic and Molecular Pathway Profiling
by Maria-Magdalena Georgescu
Cancers 2024, 16(2), 361; https://doi.org/10.3390/cancers16020361 - 15 Jan 2024
Cited by 5 | Viewed by 3530
Abstract
Glioblastoma is the most frequent and malignant primary neoplasm of the central nervous system. In a recent breakthrough study on a prospective Discovery cohort, I proposed the first all-inclusive molecular classification of glioblastoma into seven subgroups, G1-G7, based on MAPK pathway activation. New [...] Read more.
Glioblastoma is the most frequent and malignant primary neoplasm of the central nervous system. In a recent breakthrough study on a prospective Discovery cohort, I proposed the first all-inclusive molecular classification of glioblastoma into seven subgroups, G1-G7, based on MAPK pathway activation. New data from a WHO-grade-4 diffuse glioma prospective Validation cohort offers, in this study, an integrated demographic–molecular analysis of a 213-patient Combined cohort. Despite cohort differences in the median age and molecular subgroup distribution, all the prospectively-acquired cases from the Validation cohort mapped into one of the G1-G7 subgroups defined in the Discovery cohort. A younger age of onset, higher tumor mutation burden and expanded G1/EGFR-mutant and G3/NF1 glioblastoma subgroups characterized the glioblastomas from African American/Black relative to Caucasian/White patients. The three largest molecular subgroups were G1/EGFR, G3/NF1 and G7/Other. The fourth largest subgroup, G6/Multi-RTK, was detailed by describing a novel gene fusion ST7–MET, rare PTPRZ1–MET, LMNA–NTRK1 and GOPC–ROS1 fusions and their overexpression mechanisms in glioblastoma. The correlations between the MAPK pathway G1-G7 subgroups and the PI3-kinase/PTEN, TERT, cell cycle G1 phase and p53 pathways defined characteristic subgroup pathway profiles amenable to personalized targeted therapy. This analysis validated the first all-inclusive molecular classification of glioblastoma, showed significant demographic and molecular differences between subgroups, and provided the first ethnic molecular comparison of glioblastoma. Full article
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28 pages, 3129 KB  
Article
Raman Spectroscopy Spectral Fingerprints of Biomarkers of Traumatic Brain Injury
by Georgia Harris, Clarissa A. Stickland, Matthias Lim and Pola Goldberg Oppenheimer
Cells 2023, 12(22), 2589; https://doi.org/10.3390/cells12222589 - 8 Nov 2023
Cited by 19 | Viewed by 5141
Abstract
Traumatic brain injury (TBI) affects millions of people of all ages around the globe. TBI is notoriously hard to diagnose at the point of care, resulting in incorrect patient management, avoidable death and disability, long-term neurodegenerative complications, and increased costs. It is vital [...] Read more.
Traumatic brain injury (TBI) affects millions of people of all ages around the globe. TBI is notoriously hard to diagnose at the point of care, resulting in incorrect patient management, avoidable death and disability, long-term neurodegenerative complications, and increased costs. It is vital to develop timely, alternative diagnostics for TBI to assist triage and clinical decision-making, complementary to current techniques such as neuroimaging and cognitive assessment. These could deliver rapid, quantitative TBI detection, by obtaining information on biochemical changes from patient’s biofluids. If available, this would reduce mis-triage, save healthcare providers costs (both over- and under-triage are expensive) and improve outcomes by guiding early management. Herein, we utilize Raman spectroscopy-based detection to profile a panel of 18 raw (human, animal, and synthetically derived) TBI-indicative biomarkers (N-acetyl-aspartic acid (NAA), Ganglioside, Glutathione (GSH), Neuron Specific Enolase (NSE), Glial Fibrillary Acidic Protein (GFAP), Ubiquitin C-terminal Hydrolase L1 (UCHL1), Cholesterol, D-Serine, Sphingomyelin, Sulfatides, Cardiolipin, Interleukin-6 (IL-6), S100B, Galactocerebroside, Beta-D-(+)-Glucose, Myo-Inositol, Interleukin-18 (IL-18), Neurofilament Light Chain (NFL)) and their aqueous solution. The subsequently derived unique spectral reference library, exploiting four excitation lasers of 514, 633, 785, and 830 nm, will aid the development of rapid, non-destructive, and label-free spectroscopy-based neuro-diagnostic technologies. These biomolecules, released during cellular damage, provide additional means of diagnosing TBI and assessing the severity of injury. The spectroscopic temporal profiles of the studied biofluid neuro-markers are classed according to their acute, sub-acute, and chronic temporal injury phases and we have further generated detailed peak assignment tables for each brain-specific biomolecule within each injury phase. The intensity ratios of significant peaks, yielding the combined unique spectroscopic barcode for each brain-injury marker, are compared to assess variance between lasers, with the smallest variance found for UCHL1 (σ2 = 0.000164) and the highest for sulfatide (σ2 = 0.158). Overall, this work paves the way for defining and setting the most appropriate diagnostic time window for detection following brain injury. Further rapid and specific detection of these biomarkers, from easily accessible biofluids, would not only enable the triage of TBI, predict outcomes, indicate the progress of recovery, and save healthcare providers costs, but also cement the potential of Raman-based spectroscopy as a powerful tool for neurodiagnostics. Full article
(This article belongs to the Special Issue Cellular Regeneration Therapy for Traumatic Brain Injury (TBI))
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13 pages, 897 KB  
Article
Serum Markers of Brain Injury in Pediatric Patients with Congenital Heart Defects Undergoing Cardiac Surgery: Diagnostic and Prognostic Role
by Lacramioara Eliza Chiperi, Adina Huţanu, Cristina Tecar and Iolanda Muntean
Clin. Pract. 2023, 13(5), 1253-1265; https://doi.org/10.3390/clinpract13050113 - 23 Oct 2023
Cited by 2 | Viewed by 2597
Abstract
Introduction: The objectives of this study were to assess the role of neuromarkers like glial fibrillary acidic protein (GFAP), brain-derived neurotrophic factor (BDNF), protein S100 (pS100), and neuron-specific enolase (NSE) as diagnostic markers of acute brain injury and also as prognostic markers [...] Read more.
Introduction: The objectives of this study were to assess the role of neuromarkers like glial fibrillary acidic protein (GFAP), brain-derived neurotrophic factor (BDNF), protein S100 (pS100), and neuron-specific enolase (NSE) as diagnostic markers of acute brain injury and also as prognostic markers for short-term neurodevelopmental impairment. Methods: Pediatric patients with congenital heart defects (CHDs) undergoing elective cardiac surgery were included. Neurodevelopmental functioning was assessed preoperatively and 4–6 months postoperatively using the Denver Developmental Screening Test II. Blood samples were collected preoperatively and postoperatively. During surgery, regional cerebral tissue oxygen saturation was monitored using near-infrared spectroscopy (NIRS). Results: Forty-two patients were enrolled and dichotomized into cyanotic and non-cyanotic groups based on peripheric oxygen saturation. Nineteen patients (65.5%) had abnormal developmental scores in the non-cyanotic group and eleven (84.6%) in the cyanotic group. A good diagnostic model was observed between NIRS values and GFAP in the cyanotic CHD group (AUC = 0.7). A good predicting model was observed with GFAP and developmental scores in the cyanotic CHD group (AUC = 0.667). A correlation was found between NSE and developmental quotient scores (r = 0.09, p = 0.046). Conclusions: From all four neuromarkers studied, only GFAP was demonstrated to be a good diagnostic and prognostic factor in cyanotic CHD patients. NSE had only prognostic value. Full article
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19 pages, 3618 KB  
Article
Mesenchymal Stem Cells in the Treatment of Human Spinal Cord Injury: The Effect on Individual Values of pNF-H, GFAP, S100 Proteins and Selected Growth Factors, Cytokines and Chemokines
by Lucia Slovinska, Denisa Harvanova, Jana Janockova, Jana Matejova, Peter Cibur, Marko Moravek, Timea Spakova and Jan Rosocha
Curr. Issues Mol. Biol. 2022, 44(2), 578-596; https://doi.org/10.3390/cimb44020040 - 24 Jan 2022
Cited by 4 | Viewed by 4621
Abstract
At present, there is no effective way to treat the consequences of spinal cord injury (SCI). SCI leads to the death of neural and glial cells and widespread neuroinflammation with persisting for several weeks after the injury. Mesenchymal stem cells (MSCs) therapy is [...] Read more.
At present, there is no effective way to treat the consequences of spinal cord injury (SCI). SCI leads to the death of neural and glial cells and widespread neuroinflammation with persisting for several weeks after the injury. Mesenchymal stem cells (MSCs) therapy is one of the most promising approaches in the treatment of this injury. The aim of this study was to characterize the expression profile of multiple cytokines, chemokines, growth factors, and so-called neuromarkers in the serum of an SCI patient treated with autologous bone marrow-derived MSCs (BM-MSCs). SCI resulted in a significant increase in the levels of neuromarkers and proteins involved in the inflammatory process. BM-MSCs administration resulted in significant changes in the levels of neuromarkers (S100, GFAP, and pNF-H) as well as changes in the expression of proteins and growth factors involved in the inflammatory response following SCI in the serum of a patient with traumatic SCI. Our preliminary results encouraged that BM-MSCs with their neuroprotective and immunomodulatory effects could affect the repair process after injury. Full article
(This article belongs to the Special Issue Signaling Pathways, Development, and Biomarkers in Neuropathy)
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19 pages, 11997 KB  
Article
Methodology and Neuromarkers for Cetaceans’ Brains
by Simona Sacchini, Pedro Herráez, Manuel Arbelo, Antonio Espinosa de los Monteros, Eva Sierra, Miguel Rivero, Cristiano Bombardi and Antonio Fernández
Vet. Sci. 2022, 9(2), 38; https://doi.org/10.3390/vetsci9020038 - 21 Jan 2022
Cited by 15 | Viewed by 6258
Abstract
Cetacean brain sampling may be an arduous task due to the difficulty of collecting and histologically preparing such rare and large specimens. Thus, one of the main challenges of working with cetaceans’ brains is to establish a valid methodology for an optimal manipulation [...] Read more.
Cetacean brain sampling may be an arduous task due to the difficulty of collecting and histologically preparing such rare and large specimens. Thus, one of the main challenges of working with cetaceans’ brains is to establish a valid methodology for an optimal manipulation and fixation of the brain tissue, which allows the samples to be viable for neuroanatomical and neuropathological studies. With this in view, we validated a methodology in order to preserve the quality of such large brains (neuroanatomy/neuropathology) and at the same time to obtain fresh brain samples for toxicological, virological, and microbiological analysis (neuropathology). A fixation protocol adapted to brains, of equal or even three times the size of human brains, was studied and tested. Finally, we investigated the usefulness of a panel of 20 antibodies (neuromarkers) associated with the normal structure and function of the brain, pathogens, age-related, and/or functional variations. The sampling protocol and some of the 20 neuromarkers have been thought to explore neurodegenerative diseases in these long-lived animals. To conclude, many of the typical measures used to evaluate neuropathological changes do not tell us if meaningful cellular changes have occurred. Having a wide panel of antibodies and histochemical techniques available allows for delving into the specific behavior of the neuronal population of the brain nuclei and to get a “fingerprint” of their real status. Full article
(This article belongs to the Section Anatomy, Histology and Pathology)
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19 pages, 5004 KB  
Article
Deep Transfer Learning for Parkinson’s Disease Monitoring by Image-Based Representation of Resting-State EEG Using Directional Connectivity
by Emad Arasteh, Ailar Mahdizadeh, Maryam S. Mirian, Soojin Lee and Martin J. McKeown
Algorithms 2022, 15(1), 5; https://doi.org/10.3390/a15010005 - 24 Dec 2021
Cited by 16 | Viewed by 7242
Abstract
Parkinson’s disease (PD) is characterized by abnormal brain oscillations that can change rapidly. Tracking neural alternations with high temporal resolution electrophysiological monitoring methods such as EEG can lead to valuable information about alterations observed in PD. Concomitantly, there have been advances in the [...] Read more.
Parkinson’s disease (PD) is characterized by abnormal brain oscillations that can change rapidly. Tracking neural alternations with high temporal resolution electrophysiological monitoring methods such as EEG can lead to valuable information about alterations observed in PD. Concomitantly, there have been advances in the high-accuracy performance of deep neural networks (DNNs) using few-patient data. In this study, we propose a method to transform resting-state EEG data into a deep latent space to classify PD subjects from healthy cases. We first used a general orthogonalized directed coherence (gOPDC) method to compute directional connectivity (DC) between all pairwise EEG channels in four frequency bands (Theta, Alpha, Beta, and Gamma) and then converted the DC maps into 2D images. We then used the VGG-16 architecture (trained on the ImageNet dataset) as our pre-trained model, enlisted weights of convolutional layers as initial weights, and fine-tuned all layer weights with our data. After training, the classification achieved 99.62% accuracy, 100% precision, 99.17% recall, 0.9958 F1 score, and 0.9958 AUC averaged for 10 random repetitions of training/evaluating on the proposed deep transfer learning (DTL) network. Using the latent features learned by the network and employing LASSO regression, we found that latent features (as opposed to the raw DC values) were significantly correlated with five clinical indices routinely measured: left and right finger tapping, left and right tremor, and body bradykinesia. Our results demonstrate the power of transfer learning and latent space derivation for the development of oscillatory biomarkers in PD. Full article
(This article belongs to the Special Issue Machine Learning in Medical Signal and Image Processing)
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18 pages, 2294 KB  
Article
Detection of Mild Cognitive Impairment with MEG Functional Connectivity Using Wavelet-Based Neuromarkers
by Su Yang, Jose Miguel Sanchez Bornot, Ricardo Bruña Fernandez, Farzin Deravi, Sanaul Hoque, KongFatt Wong-Lin and Girijesh Prasad
Sensors 2021, 21(18), 6210; https://doi.org/10.3390/s21186210 - 16 Sep 2021
Cited by 4 | Viewed by 3894
Abstract
Studies on developing effective neuromarkers based on magnetoencephalographic (MEG) signals have been drawing increasing attention in the neuroscience community. This study explores the idea of using source-based magnitude-squared spectral coherence as a spatial indicator for effective regions of interest (ROIs) localization, subsequently discriminating [...] Read more.
Studies on developing effective neuromarkers based on magnetoencephalographic (MEG) signals have been drawing increasing attention in the neuroscience community. This study explores the idea of using source-based magnitude-squared spectral coherence as a spatial indicator for effective regions of interest (ROIs) localization, subsequently discriminating the participants with mild cognitive impairment (MCI) from a group of age-matched healthy control (HC) elderly participants. We found that the cortical regions could be divided into two distinctive groups based on their coherence indices. Compared to HC, some ROIs showed increased connectivity (hyper-connected ROIs) for MCI participants, whereas the remaining ROIs demonstrated reduced connectivity (hypo-connected ROIs). Based on these findings, a series of wavelet-based source-level neuromarkers for MCI detection are proposed and explored, with respect to the two distinctive ROI groups. It was found that the neuromarkers extracted from the hyper-connected ROIs performed significantly better for MCI detection than those from the hypo-connected ROIs. The neuromarkers were classified using support vector machine (SVM) and k-NN classifiers and evaluated through Monte Carlo cross-validation. An average recognition rate of 93.83% was obtained using source-reconstructed signals from the hyper-connected ROI group. To better conform to clinical practice settings, a leave-one-out cross-validation (LOOCV) approach was also employed to ensure that the data for testing was from a participant that the classifier has never seen. Using LOOCV, we found the best average classification accuracy was reduced to 83.80% using the same set of neuromarkers obtained from the ROI group with functional hyper-connections. This performance surpassed the results reported using wavelet-based features by approximately 15%. Overall, our work suggests that (1) certain ROIs are particularly effective for MCI detection, especially when multi-resolution wavelet biomarkers are employed for such diagnosis; (2) there exists a significant performance difference in system evaluation between research-based experimental design and clinically accepted evaluation standards. Full article
(This article belongs to the Special Issue Smart Computing Systems for Biomedical Signal Processing)
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17 pages, 2274 KB  
Article
Multi-Platform Classification of IDH-Wild-Type Glioblastoma Based on ERK/MAPK Pathway: Diagnostic, Prognostic and Therapeutic Implications
by Maria-Magdalena Georgescu
Cancers 2021, 13(18), 4532; https://doi.org/10.3390/cancers13184532 - 9 Sep 2021
Cited by 19 | Viewed by 5079
Abstract
Glioblastoma is the most aggressive and frequent glioma in the adult population. Because current therapy regimens confer only minimal survival benefit, molecular subgrouping to stratify patient prognosis and therapy design is warranted. This study presents a multi-platform classification of glioblastoma by analyzing a [...] Read more.
Glioblastoma is the most aggressive and frequent glioma in the adult population. Because current therapy regimens confer only minimal survival benefit, molecular subgrouping to stratify patient prognosis and therapy design is warranted. This study presents a multi-platform classification of glioblastoma by analyzing a large, ethnicity-inclusive 101-adult-patient cohort. It defines seven non-redundant IDH-wild-type glioblastoma molecular subgroups, G1–G7, corresponding to the upstream receptor tyrosine kinase (RTK) and RAS-RAF segment of the ERK/MAPK signal transduction pathway. These glioblastoma molecular subgroups are classified as G1/EGFR, G2/FGFR3, G3/NF1, G4/RAF, G5/PDGFRA, G6/Multi-RTK, and G7/Other. The comprehensive genomic analysis was refined by expression landscaping of all RTK genes, as well as of the major associated growth pathway mediators, and used to hierarchically cluster the subgroups. Parallel demographic, clinical, and histologic pattern analyses were merged with the molecular subgrouping to yield the first inclusive multi-platform classification for IDH-wild-type glioblastoma. This straightforward classification with diagnostic and prognostic significance may be readily used in neuro-oncological practice and lays the foundation for personalized targeted therapy approaches. Full article
(This article belongs to the Special Issue Updates on Molecular Targeted Therapies for CNS Tumors)
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18 pages, 1621 KB  
Article
Towards a Functional Neuromarker of Impulsivity: Feedback-Related Brain Potential during Risky Decision-Making Associated with Self-Reported Impulsivity in a Non-Clinical Sample
by Juliana Teti Mayer, Charline Compagne, Magali Nicolier, Yohan Grandperrin, Thibault Chabin, Julie Giustiniani, Emmanuel Haffen, Djamila Bennabi and Damien Gabriel
Brain Sci. 2021, 11(6), 671; https://doi.org/10.3390/brainsci11060671 - 21 May 2021
Cited by 10 | Viewed by 4412
Abstract
Risk-taking is part of the multidimensional nature of impulsivity, consisting of an active engagement in behaviors or choices with potentially undesirable results, with probability as the cost for an expected reward. In order to understand the neurophysiological activity during risky behavior and its [...] Read more.
Risk-taking is part of the multidimensional nature of impulsivity, consisting of an active engagement in behaviors or choices with potentially undesirable results, with probability as the cost for an expected reward. In order to understand the neurophysiological activity during risky behavior and its relationship with other dimensions of impulsivity, we have acquired event-related-potential (ERP) data and self-reported impulsivity scores from 17 non-clinical volunteers. They underwent high-resolution electroencephalography (HR-EEG) combined with an adapted version of the Balloon Analogue Risk Task (BART), and completed the Barratt Impulsiveness Scale (BIS-10) and the Urgency, Premeditation, Perseverance, Sensation Seeking, Impulsive Behavior Scale (UPPS). The ERP components were sensitive to valence (FRN, P300) and risk/reward magnitude (SPN, RewP). Our main finding evidenced a positive correlation between the amplitude of the P300 component following positive feedback and both the global UPPS score and the (lack of) perseverance UPPS subscale, significant for several adjacent electrodes. This finding might suggest an adaptive form of impulsive behavior, which could be associated to the reduction on the difference of the P300 amplitude following negative and positive feedback. However, further investigation with both larger clinical and non-clinical samples is required. Full article
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