Search Results (271)

Background/Objectives: Antimicrobial peptides (AMPs) are considered alternatives to classical antibiotics due to limited resistance development in bacteria. However, bacteria can develop resistance to AMPs through evolutionary adaptation, including oligosaccharide modifications and multidrug efflux pumps. Further research is needed to elucidate the defense mechanisms employed against AMPs to address the emerging resistance problem. Pexiganan is a cationic peptide with effective broad-spectrum antimicrobial activity. The aim of this study is to elucidate the genomic and transcriptomic basis of E. coli’s evolutionary adaptation to pexiganan. Methods: The E. coli ATCC BAA-2523 strain became resistant to pexiganan via evolutionary adaptation methodologies. Whole-genome and transcriptome analyses of resistant and susceptible populations were conducted using Nanopore sequencing and Illumina RNA sequencing, respectively. Results: Resistance development became particularly evident after 15 µg/mL, and the bacteria demonstrated the ability to grow even at high doses (up to 1000 µg/mL). Increases in expression levels of classical ARGs such as emrB, acrF, OXA, sul2, and dfrA14 in the pexiganan-resistant strain indicate that bacteria have the potential for broad-spectrum resistance to other antibiotics alongside pexiganan. Missense mutations have been identified in the phosphatidylserine synthase and cardiolipin synthase genes, which are involved in membrane biosynthesis. Increased expression was observed in the membrane-bound lytic murein transglucosylase (mltF), the murein hydrolase activator (EnvC), and the Antigen 43 (Ag43) gene. Conclusions: Pexiganan may not only target the cell membrane but also trigger the bacterium’s overall transcriptional response and cross-resistance and MDR systems. Upregulation of multidrug efflux pumps, lytic murein transglucosylase, the murein hydrolase activator and the Antigen 43 gene might be associated with resistance. In addition, the missense mutation was detected in the membrane biosynthesis genes pssA and clsB. In vivo infection models, targeted functional genomics, and comprehensive phenotypic cross-resistance testing will be required to validate our results. Full article

Background/Objectives: Freshwater microalgae–bacteria consortia are increasingly utilized in wastewater treatment and biomass production. However, bacteria associated with the algal phycosphere may act as environmental reservoirs of multidrug-resistant (MDR) phenotypes and antibiotic resistance genes (ARGs), including resistance to last-resort antibiotics such as colistin. Methods: An axenic culture of the freshwater microalga Pectinodesmus pectinatus was established using a NaClO-based cleaning protocol. Three phycosphere-associated bacterial strains (Chryseobacterium sp., Pseudomonas monteilii, and Stenotrophomonas pavanii) were isolated and identified by 16S rRNA gene analysis. Antimicrobial susceptibility testing was performed using broth microdilution against 16 antibiotics. Whole-genome sequencing of the most resistant isolate, S. pavanii, was conducted using Oxford Nanopore technology, followed by genome annotation and in silico resistome analysis using CARD, AMRFinderPlus, and ResFinder. Results: Among the three isolates, S. pavanii exhibited the broadest resistance profile, including high minimum inhibitory concentrations (MICs) to multiple β-lactams and colistin (MIC ≥ 16 μg/mL). No plasmid-borne mcr genes were detected. Instead, the genome encoded multiple chromosomal determinants potentially associated with polymyxin non-susceptibility, including lipid A and lipopolysaccharide modification pathways (e.g., arn genes and eptA), outer-membrane maintenance and LPS transport systems, multidrug efflux pumps, and regulatory elements. Integration of genomic and phenotypic data suggested that the observed colistin non-susceptibility may be associated with intrinsic chromosomal determinants inferred from whole-genome analysis. Conclusions: This study demonstrates that the P. pectinatus phycosphere can harbor multidrug-resistant (MDR) bacteria, including strains exhibiting colistin non-susceptibility potentially associated with a repertoire of intrinsic chromosomal resistance mechanisms inferred from genomic analysis. Therefore, freshwater microalgae-based systems should be considered potential environmental reservoirs contributing to the dissemination of antimicrobial resistance. Full article

Forward osmosis (FO) membranes face challenges in balancing high water permeability, low reverse salt flux (RSF), and mechanical durability. Although nanopores in graphene have great theoretical potential, the existing methods make it difficult to independently optimize the nanopores of the graphene layer and the microstructure of the substrate without damaging each other. Here, we propose a defect engineering strategy based on oxygen plasma etching to address this collaborative optimization challenge. Monolayer porous graphene (PG) was integrated with polysulfone (Psf) substrates, followed by oxygen plasma etching to introduce nanopores and oxygen-containing functional groups (e.g., carboxyl, hydroxyl). By controlling the etching time to 10 s, the resulting membrane (S-PG10) exhibited a water flux of 0.24 LMH in 0.5 M NaCl, representing an order-of-magnitude increase compared to the pristine graphene membrane (S-G). Remarkably, S-PG10 maintained a high salt rejection (>96%) and a low J_s/J_w (<0.35 g·L⁻¹). Substrate modification via short-term plasma etching (5 min) further doubled the water flux of S*5-PG10 (0.47 LMH in 0.5 M NaCl) by increasing porosity (81.8%→85.6%) and hydrophilicity. However, prolonged etching (>15 min) degraded mechanical strength and increased RSF due to pore structure disruption. To enhance robustness, Poly(D,L-lactic acid) (PDLLA)-doped substrates (S^#-PG) were engineered, with 0.1 wt.% PDLLA optimizing mechanical properties while maintaining low RSF and high flux. Excessive PDLLA (10 wt.%) induced hydrophobicity and crystalline structures, reducing permeability. The study demonstrates that synergistic optimization of plasma etching duration on the graphene selective layer (5~10 s) and substrates (5 min) as well as PDLLA doping (0.1 wt.%) balances pore architecture, surface chemistry, and substrate integrity, achieving FO membranes with superior water-salt selectivity and mechanical stability. These findings provide critical insights into designing high-performance graphene-based membranes for sustainable desalination and water purification. Full article

Low-frequency acoustic fields—common in ventilation ducts, building façades, and industrial infrastructure—remain an underutilized source for ambient energy harvesting, particularly in humid environments where conventional contact-based or mechanically resonant harvesters may degrade over time. This study introduces a theoretical framework for converting acoustic pressure oscillations into electrical power through acoustic–electrokinetic coupling and proposes the Acoustic Baroionic Harvester (ABH) as a solid-state concept combining a Helmholtz resonator with a charged nanoporous membrane. The model is derived from coupled electrokinetic and fluid-mechanical governing relations, leading to closed-form expressions for the open-circuit voltage, internal electrokinetic resistance, and maximum deliverable power as functions of membrane surface charge, electrolyte properties, pore geometry, and resonance-induced pressure amplification. Numerical simulations are performed to validate the analytical scaling laws and to determine operating regimes that maximize power transfer to an external load. Under representative low-frequency acoustic excitation, the ABH predicts open-circuit voltages on the order of tens of millivolts and maximum power densities in the sub-microwatt-per-square-centimeter range. A compact CAD conceptual design tuned to approximately 120 Hz with a moderate resonance quality factor supports the feasibility of practical integration. The proposed approach enables micro-power generation from persistent low-frequency acoustic sources and provides a physically grounded pathway for self-powered sensing applications in built and industrial environments. Full article

Background/Objectives: Candidozyma auris is the most frequent multidrug-resistant fungal infection in the Arabian Peninsula, with high mortality rates; therefore, new medications are in high demand. Microbes in marine habitats have genetically evolved to survive under a variety of adverse conditions, including severe temperatures, salinity, pH, and other stress factors, by generating various bioactive metabolites. These bioactive secondary metabolites have strong potential for use as antifungal agents. Due to the shortage of antifungal medications and the emergence of treatment resistance in C. auris, identifying new therapeutics from synthetic bacterial components or natural materials has become a necessity. Natural molecules have numerous advantages over synthetic substances, including structural variation and low toxicity. Few next-generation sequence-based investigations have been carried out on anti-Candidozyma auris bacterial species to identify potential therapeutic candidates. Therefore, the aim of this study is to identify biosynthetic gene clusters from marine bacteria using next-generation sequencing to discover novel drug compounds against multidrug-resistant C. auris. Methods: More than 68 isolates were collected from various marine environments using standard techniques. All isolates were tested against the multidrug-resistant C. auris. Scanning electron microscopy was utilized to investigate the cell membrane rupture caused by defused metabolites of the IRMCESH58L bacterium in C. auris. The Vibrio sp. IRMCESH58L genome was sequenced using long-read nanopore sequencing technology. Results: The bacterial strain IRMCESH58L, isolated from a fish liver sample, showed the highest and most constant activity against C. auris. An in vitro toxicity test found that IRMCESH58L had no cell cytotoxicity against HFF-1 cells. The assembled plasmid-free genome is 6,556,025 bp (48.93% G+C), with an N50 of 909243. Comparative analysis confirmed its relation to Vibrio alginolyticus. Conclusions: Whole-genome analysis of the native bacterial strain IRMCESH58L revealed various biosynthetic gene clusters, including those involved in surfactin’s biosynthesis of putative natural anti-C. auris chemicals, but no pathogenic protein-coding genes, emphasizing the importance of marine bacteria in the fight against C. auris. Following this in vivo study, therapeutic targets will later be selected for further pre-clinical studies. Full article

Wellbore instability in shale formations represents a worldwide challenge in drilling engineering. The development of high-performance shale stabilizers is crucial for enhancing wellbore stability. A core–shell structured shale stabilizer, designated AAD-CaCO₃, was synthesized via inverse emulsion polymerization using acrylamide (AM), 2-acrylamido-2-methylpropanesulfonic acid (AMPS), and dimethyl diallyl ammonium chloride (DMDAAC) as monomers. Nano-CaCO₃ was generated in situ by reacting calcium chloride and sodium carbonate. Sodium bisulfite and ammonium persulfate were used as initiators. The product was characterized by Fourier transform infrared spectroscopy (FTIR), scanning electron microscopy (SEM), transmission electron microscopy (TEM), and thermogravimetric analysis (TGA). Its effects on the rheological properties and filtration performance of a bentonite-based mud were evaluated. The stabilizer’s efficacy in inhibiting shale hydration swelling and dispersion was evaluated through linear swelling tests and shale rolling dispersion experiments, while its plugging performance was examined via a filtration loss test with a nanoporous membrane and spontaneous imbibition tests. The results indicated that AAD-CaCO₃ possesses a core–shell structure with the nano-CaCO₃ encapsulated by the polymer. It moderately improved the rheology of the bentonite-based mud and significantly reduced both the low-temperature and low-pressure (LTLP) filtration loss and the high-temperature and high-pressure (HTHP) filtration loss. AAD-CaCO₃ could be adsorbed onto shale surfaces through electrostatic attraction, resulting in substantially reduced clay hydration swelling and an increased shale cutting recovery rate. Effective plugging of micro-nanopores in shale was achieved, demonstrating a dual mechanism of chemical inhibition and physical plugging. Full article

Herein, we report the synthesis via controlled reversible addition-fragmentation chain transfer (RAFT) polymerization of amphiphilic 2-vinylpyridine-b-styrene (2VPy-b-Sty) diblock copolymers of high molar masses (range: 52,100–304,000 g mol⁻¹) and various compositions (range: 2VP content 11.6–59.2 mol%) and their use for the fabrication of nanoporous membranes. The successful synthesis of the amphiphilic diblock copolymers was confirmed through the characterization of their molar masses, molar mass distribution, and composition using GPC and ¹H-NMR spectroscopy, respectively. Subsequently, membranes of the diblock copolymers were fabricated following the “phase inversion” technique. The resulting membranes were characterized via scanning electron microscopy which revealed the presence of sphere percolation networks morphology for all diblock copolymers with M_n ranging from 120 to 300 kDa and 2VPy content between 10 and 15 mol% at the optimal conditions. Afterward, the developed membranes were evaluated in terms of their permeability towards water and in terms of their ability to retain two different microorganisms, namely, Enterococcus faecalis and Escherichia coli, that are known to be harmful to human health. The experimental water flux for a membrane with pore size around 60 nm was equal to 31,400 L h⁻¹ m² and expectedly decreased with the decrease in membrane pore diameter. The retention ability of membranes for Enterococcus faecalis and Escherichia coli was higher than 90%. In particular, the retention ability for Enterococcus faecalis was equal to 98.9% and for Escherichia coli was 91.4%. The toxicity of the produced membrane was also determined, and the measured value was relatively low, at 17%. Full article

Zero-depth nanopores present a promising solution to the challenges associated with ultrathin membranes used in solid-state resistive pulse sensors for DNA sequencing. Most existing fabrication methods are either complex or lack the nanoscale precision required. In this study, we introduce a cost-effective approach that combines PDMS molding at the intersection of silicon micro-blades with an innovative high-resolution nano-positioning technique. These blades are created through photolithography and a two-step KOH wet etching process, allowing for the formation of sub-50 nm 3D rhombic zero-depth nanopores featuring large vertex angles. To address the limitations of SEM imaging—such as dielectric charging and deformation of PDMS membranes under electron beam exposure—we devised a finite element model (FEM) that correlates electrical conductance with pore size and electrolyte concentration. This model aligns closely with experimental data, yielding a mean absolute percentage error of 3.69%, thereby enabling real-time indirect sizing of the nanopores based on the measured conductance. Additionally, we identified a critical channel length beyond which pore resistance becomes negligible, facilitating a linear relationship between conductance and pore diameter. The nanopores produced using this method exhibited a 2.4-fold increase in conductance compared to earlier designs, highlighting their potential for high-precision DNA sequencing applications. Full article

Nanosecond pulsed electric fields (nsPEFs) are ultrashort, high-intensity electrical pulses that have unique biological actions, including the formation of membrane nanopores and the efficient induction of cell death. nsPEFs are currently regarded as a promising modality for cancer therapy. During cancer progression, abnormal cells become more malignant through epithelial–mesenchymal transition (EMT). EMT is a biological process in which cells acquire mesenchymal traits and thereby increase their motility and invasiveness. Despite the importance of EMT in cancer progression, however, limited information is available on whether EMT modulates cellular responses to nsPEFs. In this study, we compared the responses of EMT and non-EMT human A549 cells to nsPEFs. We found that EMT induction rendered A549 cells more susceptible to nsPEFs as evidenced by decreased cell viability and increased nanopore formation upon nsPEF exposure. nsPEFs predominantly induced non-apoptotic cell death in EMT cells, and extracellular Ca²⁺ augmented the cytotoxicity of nsPEFs, suggesting involvement of nanopore-mediated Ca²⁺ influx in cytotoxicity. These findings reveal a novel feature of nsPEFs in targeting EMT cells, further supporting the unique biological actions of nsPEFs and their therapeutic potential for cancer. Full article

The growing threat of airborne biological agents necessitates rapid, sensitive, and portable detection systems to mitigate risks to public health and national security. We present a comprehensive overview of biosensor technologies developed for airborne biothreat detection, with a focus on aptamer-based electrochemical sensors. These sensors offer key advantages in portability, chemical stability, and adaptability for multiplexed detection in field settings. The urgency for real-time surveillance tools capable of identifying viral, bacterial, and toxin-based agents is discussed, particularly in the context of biodefense. Aerosolized particle capture strategies are reviewed, focusing on microfluidics for micron-sized particles and condensation-based systems for submicron-sized particles, which are preferred for their small-volume operation and seamless integration with biosensors. Key biosensor components are described, including recognition elements—such as aptamers—and transduction mechanisms like electrochemical impedance spectroscopy. EIS is highlighted for its label-free, miniaturizable, and real-time readout capabilities, making it well-suited for portable biosensors. Advances in sensing strategies for both viral and bacterial targets are explored, featuring innovations in nanoporous membrane platforms, nanomaterials, and multiplexed assay formats. Recent developments demonstrate improved sensitivity through nanopore-based signal amplification and enhanced selectivity using engineered aptamer libraries. The review concludes by addressing current limitations, including environmental stability, system integration, and the need for validation with complex real-world samples. Future directions point toward the development of fully integrated, field-deployable biosensing platforms that combine effective aerosol capture with robust and selective biosensing technologies. Full article

Methodological fusion of materials chemistry, which enables us to create materials, with nanotechnology, which enables us to control nanostructures, could enable us to create advanced functional materials with well controlled nanostructures. Positioned as a post-nanotechnology concept, nanoarchitectonics will enable this purpose. This review paper highlights the broad scope of applications of the new concept of nanoarchitectonics, selecting and discussing recent papers that contain the term ‘nanoarchitectonics’ in their titles. Topics include controls of dopant atoms in solid electrolytes, transforming the framework of carbon materials, single-atom catalysts, nanorobots and microrobots, functional nanoparticles, nanotubular materials, 2D-organic nanosheets and MXene nanosheets, nanosheet assemblies, nitrogen-doped carbon, nanoporous and mesoporous materials, nanozymes, polymeric materials, covalent organic frameworks, vesicle structures from synthetic polymers, chirality- and topology-controlled structures, chiral helices, Langmuir monolayers, LB films, LbL assembly, nanocellulose, DNA, peptides bacterial cell components, biomimetic nanoparticles, lipid membranes of protocells, organization of living cells, and the encapsulation of living cells with exogenous substances. Not limited to these examples selected in this review article, the concept of nanoarchitectonics is applicable to diverse materials systems. Nanoarchitectonics represents a conceptual framework for creating materials at all levels and can be likened to a method for everything in materials science. Developing technology that can universally create materials with unexpected functions could represent the final frontier of materials science. Nanoarchitectonics will play a significant part in achieving this final frontier in materials science. Full article

Nanoporous Pt/C electrodes fabricated via aerosol coating offer excellent reactant delivery and electrochemical activity owing to their high porosity. However, the practical application prospects of such electrodes are limited by their poor mechanical properties. Herein, we quantitatively analyze the effects of thermal annealing (at 110, 150, 190, and 230 °C) on the mechanical stability and electrical properties of aerosol-based Pt/C electrodes. Post-annealing at an optimal temperature of 190 °C improved the tensile strength by 65.3%, increased their elongation from 0.82% to 1.78%, and decreased the electrical resistance while maintaining the secondary pore structure. Analyses of the electrode’s surface roughness, pore structure, and contact angle indicate that thermal reconstruction of the ionomer is crucial for stabilizing the electrode structure and controlling its surface properties. Finite element simulations using experimentally measured single-electrode properties enabled accurate prediction of the mechanical behavior of the membrane electrode assembly. These results provide design guidelines for balancing the process efficiency with the mechanical stability of aerosol-based Pt/C electrodes and can be used to improve their application prospects in aerosol-based fuel cell catalyst layers. Full article

Biobutanol can be obtained by fermentation of microorganisms and used as biofuel. The membrane separation is energetically favorable. The incorporation of butanol into syndiotactic polystyrene (sPS) with crystalline nanopores was investigated as a function of the butanol uptake temperature using infrared spectroscopy. The OH stretching modes at 3596 and 3300 cm⁻¹, corresponding to hydrogen-bonded butanol in the crystalline cavity and free butanol in the amorphous region, respectively, were employed for analysis. Upon immersion of the sPS film in butanol, butanol molecules were absorbed in the crystalline nanocavities and amorphous phase. Diffusion increased with the uptake temperature in both regions. This can be associated with the larger molecular mobility of butanol molecules at high temperatures, facilitating contact between the film surface and the butanol molecules. The number of butanol molecules incorporated into the crystalline cavity was estimated using Lambert-Beer’s law. On average 90% of the nanopore cavities were occupied by butanol, while the remaining 10% were empty. Full article

Single-molecule nanopore sensors have enabled real-time detection of enzymatic cleavage events, yet achieving sensitive and specific analysis of protease activity remains an important challenge for diagnostic applications. We engineered OmpG nanopore constructs incorporating thrombin recognition peptides into loop 6 with varied flexible and negatively charged linkers to optimize accessibility and cleavage. SDS-PAGE gel analysis showed that constructs with the recognition peptide placed after residue D225 and incorporating dual linkers achieved cleavage efficiencies up to 95%, whereas constructs without linkers showed limited cleavage. Single-channel recordings revealed that linker integration modulates pore conductance, with extended loops exhibiting intermediate open-state currents near 18 pA compared to 25 pA in wild-type OmpG. Upon thrombin addition, rapid and irreversible current drops confirmed real-time protease activity detection. These results demonstrate the critical role of linker design, particularly flexibility and charge, in optimizing nanopore protease sensors, providing a versatile platform for biomedical applications. Full article

A thermodynamically consistent model framework to describe ion transport in nanopores is presented. The continuum model unifies electro-diffusion and selective ion transport and extends the classical Poisson–Nernst–Planck (PNP) system for an idealized incompressible mixture by including finite ion size and solvation effects. Special emphasis is placed on the consistent modeling of the selectivity filter within the pore. It is treated as an embedded domain in which the constituents can change their chemical properties and mobility. Using this framework, we achieve good agreement with an experimentally observed current–voltage (IV) characteristic for an L-type selective calcium ion channel for a range of ion concentrations. In particular, we show that the model captures the experimentally observed anomalous mole fraction effect (AMFE). As a result, we find that calcium and sodium currents depend on the surface charge in the selectivity filter, the mobility of ions and the available space in the channel. Our results show that negative charges within the pore have a decisive influence on the selectivity of divalent over monovalent ions, supporting the view that AMFE can emerge from competition and binding effects in a multi-ion environment. Furthermore, the flexibility of the model allows its application in a wide range of channel types and environmental conditions, including both biological ion channels and synthetic nanopores, such as engineered membrane systems with selective ion transport. Full article