Search Results (23)

Background: Membrane proteins are preferentially solubilized with sodium dodecyl sulfate (SDS), which necessitates a purification protocol to deplete the surfactant prior to mass spectrometry analysis. However, maintaining solubility of intact membrane proteins is challenged in an SDS-free environment. SDS precipitation with potassium salts (KCl) offers a potentially viable workflow to deplete SDS and permit proteoform analysis. The purpose of this study is to devise a robust detergent-based protocol applicable for processing and analysis of intact membrane-associated proteoforms. Methods: The precipitation conditions impacting SDS removal from spinach chloroplasts and liver membrane proteome preparations were evaluated, capitalizing on optimization of pH (highly basic), addition of MS-compatible solubilizing additives (urea) and adjustment of the KCl to SDS ratio to maximize recovery and purity. Results: Characterization of the SDS-solubilized, KCl-precipitated spinach membrane preparation revealed multiple charge envelope MS spectra displaying high signal to noise, free of SDS adducts. Precipitation at pH 12 or with urea improved protein recovery and purity. Bottom-up analysis identified 1826 distinct liver protein groups from four independent SDS precipitation conditions. While precipitation at pH 8 without urea revealed a greater number of protein identifications by mass spectrometry, precipitation under highly basic conditions (pH 12) with urea provided higher membrane protein recovery and achieved the greatest number (732 of 1056) and largest percentage (69.3%) of membrane proteins identified in the SDS removal workflow. Conclusion: This workflow provides new opportunities for MS-based proteoform analysis by capitalizing on the benefits of SDS for protein extraction while maintaining high solubility and purity of intact proteins though KCl precipitation of the surfactant. Full article

Utah, USA, relies heavily on snowpack for water to sustain its growing population. Scientists and policy makers are exploring and proposing several potential sustainable solutions to improving flow to the Great Salk Lake as it recently has significantly declined in size, including removing tree canopy. This study examines the influence of tree canopy coverage, climate, and topography on snow water equivalent (SWE) within the Great Salt Lake Watershed. Using SNOTEL data, NLCD land use/land cover rasters, t-tests, and multiple linear regression (MLR), the study analyzed SWE variability in relation to canopy density, winter precipitation, elevation, temperature, and latitude. Initial t-tests showed significant differences in SWE between sites with canopy coverage below and above 70%, yet tree canopy was excluded as a significant predictor in the MLR model. Instead, SWE was primarily explained by mean winter precipitation, elevation, average winter high temperatures, and latitude. Additionally, canopy change analysis of the 2018 Pole Creek Fire in the Jordan River watershed showed no significant changes in SWE following canopy loss. This study highlights the dominant role of climatic factors in influencing snowpack dynamics on a watershed scale. It also provides important data for sustainable watershed and forestry management and a framework for understanding snowpack responses to climate and land cover changes in saline lake ecosystems. Full article

In arid and semi-arid areas, soil is blown up by the wind because of its loose structure. Wind erosion causes soil quality and fertility loss, land degradation, air pollution, disruption of ecological balance, and agricultural and livestock losses. Consequently, there is an immediate imperative for methods to mitigate the impacts of wind erosion. SICP (soybean urease-induced carbonate precipitation) has emerged as a promising biogeotechnical technology in mitigating wind erosion in arid and semi-arid regions. To enhance bio-cementation efficacy and treatment efficiency of SICP, aluminum chloride (AlCl₃) was employed as an additive to strengthen the SICP process. Multiple SICP treatment cycles with AlCl₃ additive were conducted on Tengger Desert sand specimens, with the specimens treated without AlCl₃ as the control group. The potential mechanisms by which AlCl₃ enhances SICP may have two aspects: (1) its flocculation effect accelerates the salting-out of proteinaceous organic matter in the SICP solution, retaining these materials as nucleation sites within soil pores; (2) the highly charged Al³⁺ cations adsorb onto negatively charged sand particle surfaces, acting as cores to attract and coalesce free CaCO₃ in solution, thereby promoting preferential precipitation at particle surfaces and interparticle contacts. This mechanism enhances CaCO₃ cementation efficiency, as evidenced by 2.69–3.89-fold increases in penetration resistance at the optimal 0.01 M AlCl₃ concentration, without reducing CaCO₃ production. Wind erosion tests showed an 88% reduction in maximum erosion rate (from 1142.6 to 135.3 g·m⁻²·min⁻¹), directly correlated with improved microstructural density observed via SEM (spherical CaCO₃ aggregates at particle interfaces). Economic analysis revealed a 50% cost reduction due to fewer treatment cycles, validating the method’s sustainability. These findings highlight AlCl₃-modified SICP as a robust, cost-effective strategy for wind erosion control in arid zones, with broad implications for biogeotechnical applications. Full article

To overcome the low efficiency, high cost and less environmentally friendly limitations in existing textile wastewater disposal technology, an innovative approach of cation exchange membrane electrolysis coupled with magnesium salt precipitation (CEM-MSP) was implemented. This method simultaneously achieved the high-efficiency adsorption decolorization of dyes and the recovery of lye. The results indicated that cation exchange membrane electrolysis with MgSO₄ added to the anode chamber (CEM-EA) exhibited excellent decolorization performance on DB86 dye and achieved low residual Mg²⁺ concentration. Furthermore, the adsorption mechanism of Mg(OH)₂ on DB86 was systematically investigated. The adsorption process fitted with the first-order kinetic, where the adsorption of DB86 by Mg(OH)₂ was dominated by electrostatic attraction. Detailed comparison of the four systems demonstrated that CEM-EA was superior to the single magnesium addition method (85.24%) or the stand-alone membrane electrolysis method (10.36%), with 99% decolorization efficiency. In comparison to the cation exchange membrane electrolysis with MgSO₄ added to the cathode chamber (CEM-EC), the CEM-EA could diminish the Mg²⁺ concentration in the effluent to facilitate the lye recovery while guaranteeing the decolorization efficiency. In addition, the DB86 adsorption behavior during the formation of Mg(OH)₂ in the cathode chamber was investigated. The Mg(OH)₂ particles were relatively dense copper-blue agglomerates with a thin lamellar layer on the surface. Notably, only slight mass contamination was observed on the cation exchange membrane (CEM) surface after multiple cycles. Minor CEM contamination illustrated the stable treatment efficiency of the CEM-EA after several cycles. This study constructed a novel approach integrating membrane electrolysis with magnesium salt precipitation, delivering valuable technical solutions for textile wastewater disposal. Full article

Enzyme-induced carbonate precipitation has been studied for wind erosion control in arid areas. A comparative study was conducted between the pure urease- and crude soybean urease-induced carbonate precipitation methods with the same enzyme activity for enhancing the wind erosion resistance of desert sand. Tube tests were carried out to monitor the amount of organic matter and CaCO₃ precipitates at different reaction times. Two groups of sand specimens received several cycles of treatment with soybean urease (SU) and pure urease (PU), respectively, with urea or without urea. The treated specimens were exposed to wind-blown sand flow to evaluate erosion resistance. The results showed that SU induced more organic precipitation under the salting-out effect, which was 9.88 times higher than that from PU. Under the one-cycle treatment, SU-treated specimens with higher contents of CaCO₃ and organic matter exhibited lower erosion mass. Under the multiple-cycle treatment, the high viscosity of SU and rapid precipitation of organic matter resulted in the inhomogeneous distribution of CaCO₃ (more precipitation at the top). Once the top of SU-treated specimens was eroded, the sand below the top layer was lost rapidly, causing the erosion mass of PU-treated specimens to be 95% lower than that of SU-treated specimens. Full article

Cystic fibrosis (CF) is a rare genetic disorder commonly affecting multiple organs such as the lungs, pancreas, liver, kidney, and intestine. Our search focuses on the pathophysiological changes that affect the drugs’ absorption, distribution, metabolism, and excretion (ADME). This review aims to identify the ADME data that compares the pharmacokinetics (PK) of different drugs in CF and healthy subjects. The published data highlight multiple factors that affect absorption, such as the bile salt precipitation and the gastrointestinal pH. Changes in CF patients’ protein binding and body composition affected the drug distribution. The paper also discusses the factors affecting metabolism and renal elimination, such as drug–protein binding and metabolizing enzyme capacity. The majority of CF patients are on multidrug therapy, which increases the risk of drug–drug interactions (DDI). This is particularly true for those receiving the newly developed transmembrane conductance regulator (CFTR), as they are at a higher risk for CYP-related DDI. Our research highlights the importance of meticulously evaluating PK variations and DDIs in drug development and the therapeutic management of CF patients. Full article

Background: Pituitary adenoma (PA) is a common benign tumor that develops in the pituitary gland, causing hormonal imbalances and potential health issues. The TAS2R16 gene codes for a taste receptor and is involved in bitter taste perception, but there is currently no known direct link between this gene and pituitary adenoma. Methods: This study included 221 healthy controls and 131 patients with pituitary adenoma (PA) from the Lithuanian population. DNA was isolated from peripheral venous blood using the salt precipitation method. Genotyping was performed via RT-PCR. Statistical analysis was conducted with IBM SPSS Statistics 29.0 software, incorporating the Bonferroni correction for multiple comparisons. Results: This study found that the TAS2R16 rs978739 C allele is less common in the non-invasive PA group compared to the control group (p = 0.045). The TAS2R16 rs860170 CT genotype reduces the likelihood of developing non-invasive PA by 1.9-fold under the codominant (p = 0.024) and overdominant (p = 0.030) models. The odds of developing non-invasive PA are reduced by 2-fold under the dominant (p = 0.021) model for TAS2R16 rs860170 CT + CC genotypes and by 2-fold under the additive (p = 0.018) model for each TAS2R16 rs860170 C allele. The PA group had higher serum levels of TAS2R16 than the control group (p < 0.001). The present study found that patients with the TAS2R16 rs978739 TT or CT genotype had higher serum TAS2R16 levels and protein concentrations than healthy individuals (p = 0.025 and p = 0.019, respectively), and those with the AA or AG genotype of TAS2R16 rs1357949 had higher protein concentrations (p = 0.005 and p = 0.007, respectively). Conclusions: The TAS2R16 rs978739 C allele was less common in the non-invasive PA group compared to the control group, while the TAS2R16 rs860170 CT genotype was linked to a reduced likelihood of developing non-invasive PA. Additionally, the PA group showed higher serum levels of TAS2R16, and increased serum protein concentrations were observed in PA patients with specific TAS2R16 variants. Full article

Background: TNF-α has a dual role in multiple sclerosis (MS), contributing to both protective and harmful effects. It activates immune cells, promotes the formation of inflammatory lesions in the central nervous system, and stimulates the production of other pro-inflammatory cytokines and chemokines, leading to myelin destruction and neuronal damage. Our research focused on investigating the relationship between TNF-alpha (rs1800630, rs1800629, and rs361525) gene polymorphisms and MS. Methods: 250 healthy controls and 250 multiple sclerosis (MS) patients were included in the study. DNA was extracted from leucocytes from peripheral venous blood by salt precipitation. Single nucleotide polymorphisms (SNPs) were tested using RT–PCR. Statistical analysis of the data was performed using IBM SPSS Statistics 29.0 data analysis software. Results: The analysis revealed that the rs361525 AG genotype was significantly less frequent in the MS group compared to the control group (4.0% vs. 7.2%, p = 0.042). Sex-specific analysis showed a significant difference in genotype distribution (GG, AG, AA) among males between the MS group and the control group (97.7%, 0%, 2.3% vs. 90.6%, 9.4%, 0%, p = 0.005). For the rs1800629 polymorphism, significant results were also found. In subjects younger than 39 years, the A allele was significantly less frequent in the MS group than in the control group (8.6% vs. 15.0%, p = 0.030). The most robust model indicated that the AA genotype reduced the odds of MS by approximately 2 fold compared to the AG + GG genotype (p = 0.044), and each A allele reduced the odds of MS by approximately 2 fold (p = 0.028). The rs1800630 A allele was significantly more common in males in the MS group than in the control group (21.0% vs. 12.9%, p = 0.046). Conclusions: In conclusion, our study identifies significant associations between TNF-alpha gene variants and MS. Specifically, the rs631525 AG genotype was less common in the MS group, with notable sex-specific differences observed. The rs1800629 A allele was statistically significantly less frequent in the MS group than in the control group, and the AA genotype reduced the odds of MS occurrence by ~2 fold compared with the AG + GG genotypes. Additionally, each A allele of rs1800629 was linked to a 2-fold decreased odds of MS occurrence. In males, the rs1800630 A allele was more frequent in the MS group. These findings highlight the relevance of TNF-alpha genetic variations in MS susceptibility, suggesting potential avenues for further research and therapeutic exploration. Full article

Monitoring ships on water surfaces encounters obstacles such as weather conditions, sunlight, and water ripples, posing significant challenges in accurately detecting target ships in real time. Synthetic Aperture Radar (SAR) offers a viable solution for real-time ship detection, unaffected by cloud coverage, precipitation, or light levels. However, SAR images are often affected by speckle noise, salt-and-pepper noise, and water surface ripple interference. This study introduces LCAS-DetNet, a Multi-Location Cross-Attention Ship Detection Network tailored for the ships in SAR images. Modeled on the YOLO architecture, LCAS-DetNet comprises a feature extractor, an intermediate layer (“Neck”), and a detection head. The feature extractor includes the computation of Multi-Location Cross-Attention (MLCA) for precise extraction of ship features at multiple scales. Incorporating both local and global branches, MLCA bolsters the network’s ability to discern spatial arrangements and identify targets via a cross-attention mechanism. Each branch utilizes Multi-Location Attention (MLA) and calculates pixel-level correlations in both channel and spatial dimensions, further combating the impact of salt-and-pepper noise on the distribution of objective ship pixels. The feature extractor integrates downsampling and MLCA stacking, enhanced with residual connections and Patch Embedding, to improve the network’s multi-scale spatial recognition capabilities. As the network deepens, we consider this structure to be cascaded and multi-scale, providing the network with a richer receptive field. Additionally, we introduce a loss function based on Wise-IoUv3 to address the influence of label quality on the gradient updates. The effectiveness of our network was validated on the HRSID and SSDD datasets, where it achieved state-of-the-art performance: a 96.59% precision on HRSID and 97.52% on SSDD. Full article

Sample preparation for mass spectroscopy typically involves several liquid and solid phase clean-ups, extractions, and other unit operations, which are labour-intensive and error-prone. We demonstrate a centrifugal microfluidic platform that automates the whole blood sample’s preparation and clean-up by combining traditional liquid-phase and multiple solid-phase extractions for applications in mass spectroscopy (MS)-based small molecule detection. Liquid phase extraction was performed using methanol to precipitate proteins in plasma separated from a blood sample under centrifugal force. The preloaded solid phase composed of C18 beads then removed lipids with a combination of silica particles, which further cleaned up any remaining proteins. We further integrated the application of this sample prep disc with matrix-assisted laser desorption/ionization (MALDI) MS by using glancing angle deposition films, which further cleaned up the processed sample by segregating the electrolyte background from the sample salts. Additionally, hydrophilic interaction liquid chromatography (HILIC) MS was employed for detecting targeted free amino acids. Therefore, several representative ionic metabolites, including several amino acids and organic acids from blood samples, were analysed by both MALDI-MS and HILIC-MS to demonstrate the performance of this sample preparation disc. The fully automated blood sample preparation procedure only took 35 mins, with a throughput of three parallel units. Full article

Despite numerous studies on ion release from orthodontic appliances, no clear conclusions can be drawn due to complex interrelations of multiple factors. Therefore, as the first part of a comprehensive investigation of cytotoxicity of eluted ions, the objective of this study was to analyze four parts of a fixed orthodontic appliance. Specifically, NiTi archwires and stainless steel (SS) brackets, bands, and ligatures were immersed in artificial saliva and studied for morphological and chemical changes after 3-, 7-, and 14-day immersion, using the SEM/EDX technique. Ion release profiles were analyzed for all eluted ions using inductively coupled plasma mass spectrometry (ICP-MS). The results demonstrated dissimilar surface morphologies among parts of the fixed appliance, due to variations in manufacturing processes. The onset of pitting corrosion was observed for the SS brackets and bands in the as-received state. Protective oxide layers were not observed on any of the parts, but adherent layers developed on SS brackets and ligatures during immersion. Salt precipitation, mainly KCl, was also observed. ICP-MS proved to be more sensitive than SEM/EDX and exhibited results undetected by SEM/EDX. Ion release was an order-of-magnitude higher for SS bands compared to other parts, which was attributed to manufacturing procedure (welding). Ion release did not correlate with surface roughness. Full article

The modification of inorganic surfaces with weak cationic polyelectrolytes by direct deposition through precipitation is a fast approach to generating composites with high numbers of functional groups. The core/shell composites present very good sorption capacity for heavy metal ions and negatively charged organic molecules from aqueous media. The sorbed amount of lead ions, used as a model for priority pollutants such as heavy metals, and diclofenac sodium salt, as an organic contaminant model for emerging pollutants, depended strongly on the organic content of the composite and less on the nature of contaminants, due to the different retention mechanisms (complexation vs. electrostatics/hydrophobics). Two experimental approaches were considered: (i) simultaneous adsorption of the two pollutants from a binary mixture and (ii) the sequential retention of each pollutant from monocomponent solutions. The simultaneous adsorption also considered process optimization by using the central composite design methodology to study the univariate effects of contact time and initial solution acidity with the purpose of enabling further practical applications in water/wastewater treatment. Sorbent regeneration after multiple sorption-desorption cycles was also investigated to assess its feasibility. Based on different non-linear regressions, the fitting of four isotherms (Langmuir, Freundlich, Hill, and Redlich–Peterson models) and three kinetics models (pseudo-first order (PFO), pseudo-second order (PSO), and two-compartment first order (TC)) has been carried out. The best agreement with experiments was found for the Langmuir isotherm and the PFO kinetic model. Silica/polyelectrolytes with a high number of functional groups may be considered efficient and versatile sorbents that can be used in wastewater treatment processes. Full article

The in situ passivation is considered a feasible and effective remediation for moderately and lowly heavy-metal-polluted soil. Under natural precipitation, the continuous leaching characteristics of heavy metals with the immobilizers are unclear and require more study for practical applications. In this work, calcium superphosphate (CS) and activated carbon (AC) were added as stabilizers to passivate Cd in hydromorphic paddy (HP) and gray fluvo-aqvic (GF) soils. Simulated acid precipitation at different pH and salt concentrations were used as eluents. The leachate and soil were collected to analyze the stability and fraction changes of Cd. The results showed that with the eluents from 120–200 mL to 200–250 mL, the leached Cd increased and reached the highest concentration and then gradually decreased. Comparative analysis showed that the two passivators in GF soil had higher application values than those in HP soil, while AC showed 3–77 times the capacity of CS in multiple conditions. The addition of AC conversed the exchangeable and oxidized states of Cd to the residual and reduced states, while the addition of CS conversed the exchangeable and reduced states of Cd to the residual and oxidized states. The above results can provide important references for the immobilization of heavy metal cations in soil and the sustainable utilization of soil. Full article

Due to its prevalence in nature and its particular properties, silicon is one of the most popular materials in various industries. Currently, metallurgical silicon is obtained by carbothermal reduction of quartz, which is then subjected to hydrochlorination and multiple chlorination in order to obtain solar silicon. This mini-review provides a brief analysis of alternative methods for obtaining silicon by electrolysis of molten salts. The review covers factors determining the choice of composition of molten salts, typical silicon precipitates obtained by electrolysis of molten salts, assessment of the possibility of using electrolytic silicon in microelectronics, representative test results for the use of electrolytic silicon in the composition of lithium-ion current sources, and representative test results for the use of electrolytic silicon for solar energy conversion. This paper concludes by noting the tasks that need to be solved for the practical implementation of methods for the electrolytic production of silicon, for the development of new devices and materials for energy distribution and microelectronic application. Full article

Climate extremes are becoming more frequent with global climate change and have the potential to cause major ecological regime shifts. Along the northern Gulf of Mexico, a coastal wetland in Texas suffered sudden vegetation dieback following an extreme precipitation and flooding event associated with Hurricane Harvey in 2017. Historical salt marsh dieback events have been linked to climate extremes, such as extreme drought. However, to our knowledge, this is the first example of extreme precipitation and flooding leading to mass mortality of the salt marsh foundation species, Spartina alterniflora. Here, we investigated the relationships between baseline climate conditions, extreme climate conditions, and large-scale plant mortality to provide an indicator of ecosystem vulnerability to extreme precipitation events. We identified plant zonal boundaries along an elevation gradient with plant species tolerant of hypersaline conditions, including succulents and graminoids, at higher elevations, and flood-tolerant species, including S. alterniflora, at lower elevations. We quantified a flooding threshold for wetland collapse under baseline conditions characterized by incremental increases in flooding (i.e., sea level rise). We proposed that the sudden widespread dieback of S. alterniflora following Hurricane Harvey was the result of extreme precipitation and flooding that exceeded this threshold for S. alterniflora survival. Indeed, S. alterniflora dieback occurred at elevations above the wetland collapse threshold, illustrating a heightened vulnerability to flooding that could not be predicted from baseline climate conditions. Moreover, the spatial pattern of vegetation dieback indicated that underlying stressors may have also increased susceptibility to dieback in some S. alterniflora marshes.Collectively, our results highlight a new mechanism of sudden vegetation dieback in S. alterniflora marshes that is triggered by extreme precipitation and flooding. Furthermore, this work emphasizes the importance of considering interactions between multiple abiotic and biotic stressors that can lead to shifts in tolerance thresholds and incorporating climate extremes into climate vulnerability assessments to accurately characterize future climate threats. Full article