Search Results (2,006)

Monitoring the soil–plant system in forest ecosystems is crucial for preserving their ecological functions and services. This study assessed carbon and nitrogen stable isotopes and ecoenzymatic stoichiometry as suitable indicators for characterizing the soil–plant system as a functional unit of ecological processes. To this end, in June 2021 six plots (1 m² each) were selected in two typical Mediterranean forest ecotypes: a coastal stone pine forest (Pinus pinea L., PF) and a meso-hygrophilous broadleaf forest (RV). Soil samples (0–15 and 15–30 cm depth) and litter samples (40 × 40 cm) were collected and characterized in terms of physical, chemical and biochemical properties. t-tests revealed significant differences between RV and PF, indicating distinct microbial nutrient acquisition strategies. The higher C:N ratio in PF suggested lower litter quality and greater recalcitrance to microbial decomposition. Consistently, RV showed a more pronounced ¹³C and ¹⁵N enrichment from litter to SOM down to a 30 cm depth, confirming faster organic matter decomposition and mineralization. Enzyme activity patterns supported these findings. The higher β-glucosidase and butyrate esterase activities in RV reflected its greater microbial potential to activate biogeochemical cycles. Both forests exhibited a higher microbial demand for C and P than for N to maintain ecological stoichiometric balance, with stronger C limitation at the surface and P limitation in the subsoil, particularly in RV soil. This integrated monitoring approach provides insights into nutrient cycling and ecosystem resilience and offers tools to evaluate ecosystem functionality under changing environmental conditions, supporting sustainable forest management. Full article

Esterases catalyze the hydrolysis and transesterification of short-chain fatty acid esters, and microbial esterases are used in the production of biofuels, cosmetics, food, and pharmaceuticals. The soil strain Bacillus paralicheniformis T7 secretes enzymes with esterase activity; however, many bacterial enzymes remain insufficiently studied. Therefore, this study aimed to identify and characterize novel GDSL esterases produced by B. paralicheniformis. Protein mass spectrometry, combined with proteomics and genomics, identified genes encoding two GDSL esterases, which were cloned into the pET-28c(+) vector. The resulting proteins were obtained in Escherichia coli BL21(DE3) as the recombinant esterases rEST-24 and rEST-28. These recombinant GDSL esterases showed maximum activity at 40 °C and pH 7.0. Moreover, Ca²⁺, Zn²⁺, Cu²⁺, and Fe²⁺ ions inhibited their activity, and rEST-28 was resistant to the detergents Tween-20, Tween-80, and Triton X-100. High-yield esterase activity was detected in bacteria cultured on feather medium and nutrient broth, and submerged fermentation of the B. paralicheniformis T7 strain on feather medium enabled the production of an esterase extract exhibiting activity of 17,618 ± 610 U/g. These results suggest that the B. paralicheniformis T7 strain can produce esterases and shows promising potential for application in technologies that degrade fatty acid esters using hydrolytic enzymes. Full article

Biofloc technology (BFT) is based on the reutilization of nitrogenous waste generated by cultured organisms through the biotransformation of these compounds primarily into microbial biomass, allowing a reduction in water exchange. The aim of this study was to evaluate BFT as a water-saving culture strategy, using two carbon sources (chancaca and molasses), and to assess its effects on water-use efficiency, growth performance, digestive enzyme activity, and physiological responses in juvenile northern river shrimp (Cryphiops caementarius). The experiment was conducted in triplicate using 400 L fiberglass tanks, with an initial stocking density of 75 shrimp m⁻² and an average individual weight of 0.85 ± 0.65 g, over a 157-day rearing period. Water quality parameters were maintained within suitable ranges throughout the study. Significant differences were observed in the composition of bacterial and plankton communities among the biofloc treatments, whereas no significant differences were detected in growth performance or digestive enzyme activities. Heat shock protein 70 (Hsp70), a stress-related biomarker indicative of physiological responses, exhibited higher levels in the biofloc treatment supplemented with molasses. Overall, BFT treatments reduced water exchange by 81.6% while maintaining comparable biological performance to the control, indicating that biofloc technology represents a water-efficient and environmentally sustainable culture approach for juvenile Cryphiops caementarius, an endemic freshwater shrimp species, particularly in water-limited regions of northern Chile. Full article

Calcareous soils are typically deficient in essential nutrients such as iron, phosphorus, and potassium, which frequently results in nutrient deficiency in fruit trees. Bacillus licheniformis LCDD6 markedly enhanced Malus hupehensis seedling growth and plant iron nutrition in calcareous soil. This study aimed to elucidate the mechanism underlying these beneficial effects of strain LCDD6 under iron deficiency. Transcriptomic analysis revealed that iron deficiency induced metabolic reprogramming in strain LCDD6, characterized by a significant upregulation of genes involved in the biosynthesis of the siderophore bacillibactin and plant growth hormone indoleacetic acid (IAA). Consistently, metabolomic profiling identified bacillibactin and IAA as the dominant metabolites produced under iron-deficient conditions. A 60-day pot experiment further demonstrated that the cell-free fermentation broth of strain LCDD6 significantly enhanced plant growth and rhizosphere soil enzyme activities. The crude bacillibactin extract derived from the fermentation exerted the strongest effects on plant growth and iron accumulation, whereas IAA preferentially stimulated root development and promoted plant phosphorus accumulation. Additionally, different metabolites exerted distinct and selective effects on the rhizosphere microbial community, with fungi showing stronger and more metabolite-specific responses than bacteria. The crude bacillibactin extract enriched fungal taxa, particularly Coprinellus, which showed strong positive correlations with plant growth traits and iron accumulation, while Stachybotrys, enriched under IAA treatment, was positively correlated with plant phosphorus content. Overall, strain LCDD6 promotes plant growth under iron-deficient conditions through the coordinated action of multiple metabolites, with bacillibactin as the primary contributor and IAA providing complementary effects. These findings offer mechanistic insight and a scientific basis for developing Bacillus-based biofertilizers to improve nutrient acquisition in calcareous soils. Full article

In nature, a significant number of plant species form symbiotic associations with microorganisms, with arbuscular mycorrhizal fungi (AMF) and endophytic fungi being two prevalent groups of these partners. However, the ability to establish such symbioses with AMF and endophytic fungi is limited to a small fraction of native grass species. Nitrogen is a crucial nutrient for plant growth, yet it is often a limiting factor, underscoring the importance of understanding how plants acquire it. AMF enhance plant growth by improving nitrogen uptake efficiency, but the combined effects of endophytic fungi and AMF on plant physiology and ecology remain underexplored. To address this knowledge gap, in the present study, we conducted an indoor randomized block experiment to investigate the influence of endophytic fungi and AMF infection on the physiological and ecological attributes of Festuca rubra under various nitrogen regimes. The findings indicated that AMF inoculation significantly affected the total carbon content of F. rubra and the total sulfur concentration in its underground tissues across different nitrogen conditions. Additionally, dual colonization by AMF and endophytic fungi had a significant impact on the underground total nitrogen content of the plants. Furthermore, the complex interactions among AMF, endophytic fungi, and nitrogen availability emerged as critical determinants influencing underground total carbon content, transpiration rates, intercellular carbon dioxide concentrations, and the activity of soil extracellular enzymes in F. rubra. The activity of soil extracellular enzymes and pH significantly affected the structure and diversity of rhizosphere bacterial, fungal, and archaeal communities. AMF enhanced the richness of rhizosphere bacterial communities under low-nitrogen conditions, whereas endophytic fungi infection increased bacterial diversity. Soil extracellular enzyme activity and pH were closely related to the community structures and diversities of rhizosphere bacteria, fungi, and archaea. This study clarifies the effects of AMF and endophytic fungi infection on the physiological and ecological characteristics of F. rubra, significantly contributing to our understanding of the synergistic mechanisms governing the interactions among AMF, endophytic fungi, and their host plants. Full article

This study evaluated the effects of different total suspended solid (SST) levels (0, 250 and 350 mg L⁻¹) on the productive performance, intestinal condition and antioxidant enzyme activity of rainbow trout (Oncorhynchus mykiss) fry reared in a biofloc technology (BFT) system. The experimental design was completely randomized with three treatments and five replicates. A total of 225 rainbow trout fry (0.81 ± 0.06 g) were distributed into 15 tanks (70 L working volume) at a stocking density of 15 fish per tank. Tanks designated for the control treatment (clear water) were connected to a recirculating aquaculture system, whereas BFT treatments were maintained in independent units. Performance analyses were conducted and fish were sampled for intestinal histomorphometry, intestinal microbial counting and antioxidant enzymatic activity. Rearing rainbow trout fry in BFT systems with TSS levels up to 250 mg L⁻¹ proved feasible and preserved zootechnical performance, intestinal condition and antioxidant enzyme activity during the early stages of development. The higher TSS concentration negatively affected fish growth performance. However, increased colonization by lactic acid bacteria was observed, indicating that biofloc may serve as a source of probiotic bacteria. The BFT system is a viable alternative for rearing rainbow trout fry, enhancing biosecurity and reducing water consumption. Full article

A novel plant nutrient media was developed from vermicompost through microbial organisms and organic soil obtained from mango orchards. The novel nutrient media was evaluated to assess the efficacy of the novel media as both a sole and integrated nutrient source for flower production of marigold (Tagetes erecta L.) cv. Pusa Basanti in sandy loam soil. The results demonstrated that marigold flower yield was maximized when the novel plant nutrient media comprised 50% of the novel nutrient media combined with the recommended dose of chemical fertilizers, compared to chemical fertilizers alone. Post-harvest soil analysis revealed that treatments with this novel nutrient media, both alone and in combination with inorganic fertilizers, significantly enhanced nutrient availability (NPK), increased soil organic carbon content, and improved microbial activity and soil enzyme function. Principal component analysis identified flower yield per plant, number of flowers per plant, and seed yield as key variables explaining maximum variability, suggesting these traits as primary selection criteria for performance optimization, and the treatments T4 (78.01) and T5 (85.15) had the highest positive scores on PC1, indicating superior performance for yield-contributing traits. These findings indicate that integrating novel nutrient media into agricultural practices could provide developing countries with an effective strategy for addressing the environmental challenges associated with excessive inorganic fertilizer use while maintaining crop productivity. Full article

To investigate the dynamic changes during millet bran fermentation by Bacillus natto, we systematically monitored microbial growth, key enzyme activities, and the contents of major bioactive components over time. The changes in viable bacterial count, spore count, and the activities of protease, amylase, cellulase, and nattokinase (NK) fibrinolytic activity were measured throughout the 0–84 h fermentation process. Concurrently, variations in the contents of total sugars, reducing sugars, soluble dietary fiber (SDF), β-glucan, arabinoxylan, peptides, and polyphenols were analyzed. The results indicated that the viable bacterial count in the fermentation broth peaked at 48 h (9.3 log CFU/mL) and subsequently declined, while the spore count significantly increased to 7.6 log CFU/mL by 84 h. The activities of protease, amylase, cellulase, and NK fibrinolytic activity all exhibited a trend of initial increase followed by a decrease, reaching their respective maximum levels at 48 h. The contents of SDF, peptides, and polyphenols attained their highest values at 60 h, corresponding to 2.4 times, 2.17 times, and 1.5 times those of the unfermented control, respectively. The β-glucan content peaked at 24 h (31.31 mg/g millet bran), whereas the arabinoxylan content reached its maximum at 60 h, which was 19.4 times higher than that of the unfermented sample. Based on a comprehensive evaluation of all indicators, 48–60 h was determined to be the optimal fermentation duration for millet bran using B. natto. This research elucidates the relationship between enzyme activities and the accumulation of active components during fermentation, providing a theoretical foundation for the high-value utilization of millet bran and the development of functional products. Full article

Choledochal cyst (CC), a congenital biliary anomaly, is associated with recurrent infections, chronic inflammation, and an increased risk of malignancy. Although emerging evidence implicates the biliary microbiome in disease pathophysiology, its developmental dynamics in pediatric CC remain unclear. Using deep metagenomic sequencing and comprehensive functional annotation, this study characterized age-dependent changes in the biliary microbiome of 201 pediatric CC patients stratified into infancy (<1 year), early childhood (1–5 years), and later childhood (5–12 years). We found that while the taxonomic composition and alpha diversity of the microbiota remained conserved across age groups, profound functional remodeling occurred with host development. A core set of microbial species(Bacteroidota, Actinomycetota, Bacillota, and Pseudomonadota) and functional pathways was shared across all ages; however, early childhood (1–5 years) exhibited the greatest number of unique functional genes, metabolic pathways, and carbohydrate-active enzymes, identifying this period as a critical window for microbial metabolic adaptation. Age-specific patterns were also evident in clinically relevant traits: infants (<1 year) harbored the most unique antibiotic resistance and virulence factor genes, whereas the resistome and virulome became more streamlined in older children. These findings establish a paradigm of “taxonomic conservation coupled with functional remodeling” in the CC microbiome and highlight age as a key determinant of microbial community function. This study offers novel insights into the microbial dynamics underlying CC progression and suggests potential age-specific targets for future therapeutic strategies. Full article

Fish is highly prone to spoilage due to a combination of intrinsic biochemical processes and microbial proliferation, which together drive rapid quality deterioration during post-harvest handling and storage. These processes are further accelerated by factors such as elevated temperatures, mechanical damage, and suboptimal handling. In Mediterranean aquaculture, ice slurry is the standard harvesting method. This study aimed to characterize the initial post-harvest enzymatic activity of key proteolytic enzymes, calpain, collagenase, cathepsin B (CTSB), and cathepsin L (CTSL), in the white muscle of three commercially important species (Sparus aurata, Dicentrarchus labrax, and Pagrus major) harvested under standard practices across three seawater harvest temperatures (low, medium, and high). Muscle samples were collected over a 13-day chilled storage period post-harvest, and enzymatic activity was assessed using standardized fluorometric assays. Our findings establish the basal post-mortem proteolytic profiles for each species and reveal marked species-specific differences in enzyme activity patterns. Calpain and collagenase exhibited early and parallel activation, while CTSB and CTSL showed a coordinated increase during storage. Harvest temperature emerged as a critical factor, with the highest enzymatic activities consistently observed during the moderate temperature period. These results underscore the importance of species-specific physiology and seasonal conditions in shaping post-harvest filet degradation, offering a basis for refining harvest strategies to enhance quality management in Mediterranean aquaculture. Full article

Chili pepper (Capsicum annuum L.) is a globally significant economic crop, however long-term continuous cropping often induces multifaceted constraints including soil nutrient depletion, rhizosphere microbial imbalance, and pathogen accumulation, which collectively exacerbate soil-borne diseases and substantially reduce yield. Incorporating rice (Oryza sativa L.) into rotation increases the diversity of the cultivation environment and represents a cost-effective strategy to mitigate continuous-cropping obstacles. Therefore, evaluating and elucidating the role and underlying mechanisms of the chili pepper–rice rotation system in improving soil conditions and alleviating continuous cropping obstacles in chili pepper holds significant importance. This study conducted a two-year field experiment from 2023 to 2024, setting up chili pepper–rice rotation (RVR) and chili continuous cropping (CCV) treatments, to systematically analyze the effects of chili pepper–rice rotation on chili pepper yield, disease occurrence, soil nutrients, and rhizosphere microbial communities. Across 2023–2024, RVR significantly reduced the incidence of bacterial wilt and root rot, increasing yield by 10.60% in 2023 and by 61.07% in 2024 relative to CCV. Analysis of soil physicochemical properties revealed that RVR significantly promoted the accumulation of available nitrogen, phosphorus, and potassium in the soil, as well as enhanced nutrient-acquisition enzyme activity, effectively alleviating the carbon and phosphorus limitations faced by rhizosphere microorganisms. Rhizosphere microbial analysis indicated that under the RVR treatment, the abundance of pathogen-associated taxa such as Ralstonia and Fusarium significantly decreased. The co-occurrence network modularity increased, and the negative cohesion of pathogens was strengthened, thereby inhibiting pathogen expansion. Further random forest and correlation analyses demonstrated that RVR significantly contributed to yield formation by optimizing fungal metabolic pathways, such as galactose degradation, sulfate reduction, and L-tryptophan degradation. In conclusion, the chili pepper–rice rotation significantly alleviates continuous cropping obstacles and enhances yield by improving nutrient supply and regulating microbial community composition, as well as the topological structure and functional relationships of their co-occurrence networks, particularly by strengthening the role of fungi in community function and metabolic regulation. This study provides a theoretical basis for the biological and soil regulation of pepper continuous cropping obstacles and offers a feasible pathway for sustainable cultivation and green control strategies. Full article

In this study, a Nocardia niigatensis strain was isolated from boron-rich mining soils in the Bigadiç region of Türkiye and comprehensively characterized. The primary aim of this study was to isolate boron-tolerant Nocardia species and evaluate their physiological, enzymatic, and biochemical profiles. Selective isolation techniques were employed to obtain Nocardia isolates, and species-level identification was achieved using both 16S rRNA gene sequencing and MALDI-TOF MS analysis, which consistently confirmed the isolate as N. niigatensis. In addition to molecular identification, the morphological, physiological, and biochemical characteristics of the strain were extensively investigated. The strain demonstrated notable boron tolerance, exhibiting robust growth at concentrations up to 50 mM, highlighting its potential applicability in the bioremediation of boron-contaminated environments. Physiological assays further revealed moderate halotolerance and a mesophilic growth profile, with optimal growth observed at 27–37 °C. Enzymatic screening indicated positive L-glutaminase activity, an enzyme of considerable industrial relevance. Moreover, API ZYM profiling revealed a broad enzymatic spectrum, including esterases, arylamidases, phosphatases, and glucosidases, suggesting substantial metabolic versatility. Antibiotic susceptibility testing showed sensitivity to doxycycline, tobramycin, and erythromycin, whereas resistance was observed against imipenem and several β-lactam antibiotics. Metagenomic analysis of boron-rich soils from two distinct mining sites revealed marked differences in microbial community composition, with variations in Actinobacteria abundance associated with mineral type. Overall, these findings emphasize the adaptive capacity and biotechnological potential of environmental Nocardia strains inhabiting chemically stressful ecosystems, warranting further genomic and metabolomic investigations. Full article

Identifying plant-growth-promoting rhizobacteria tolerant to saline–alkali conditions is critical for developing effective microbial agents and multi-strategy approaches to remediate saline–alkali soil. Two salt–alkali-tolerant bacterial strains—phosphorus-solubilizing Bacillus pumilus JL-C and cellulose-decomposing B. halotolerans XW-3—were isolated from saline–alkali soil, with both exhibiting multiple plant-growth-promoting properties, including nitrogen fixation and the generation of indole-3-acetic acid, siderophores, and 1-aminocyclopropane-1-carboxylate deaminase. Alfalfa pot experiments were conducted under four treatments: a control, the strain JL-C treatment, the strain XW-3 treatment, and a co-inoculation treatment (JL-C/XW-3), all mixed with corn straw and applied to the saline–alkali soil. The results demonstrated that the co-inoculation treatment yielded the most significant growth-promoting effects on alfalfa, showing enhanced antioxidant enzyme activities; increased contents of proline, soluble sugar, and protein; reduced malondialdehyde content; lowered pH and electrical conductivity; elevated activities of key enzymes; and increased levels of available nitrogen, phosphorus, potassium, and organic matter content in the soil. The pot experiments were confirmed by field experiments. The results of 16S rRNA high-throughput sequencing revealed changes in the bacterial community composition in the alfalfa rhizosphere, showing shifts in the relative abundance of several bacterial taxa often reported as plant-associated or potentially beneficial. This study establishes a combined remediation strategy for saline–alkali soil utilizing complex microbial agents and corn straw. Full article

Soils with an albic horizon (characterized by a bleached, nutrient-poor eluvial layer), classified primarily as Albic Planosols and associated groups (e.g., Albic Luvisols and Retisols) in the World Reference Base for Soil Resources (WRB), are widespread in Northeast China and suffer from inherent poor nutrient availability and low crop productivity. The present study aimed to evaluate the efficacy of novel microbial–enzyme composite biofertilizers in ameliorating Albic soils. This comprehensive assessment investigated their effects on soil nutrient availability, microbial community structure, and the activities of key enzymes involved in nutrient cycling (e.g., dehydrogenase and phosphatase). Concurrently, the impact on maize crop performance was determined by measuring changes in agronomic traits, including chlorophyll content, stem diameter, and final grain yield. A field experiment was conducted in Heilongjiang Province during the 2023 maize growing season using a randomized block design with six treatments: CF (conventional chemical fertilizer, 330 kg·ha⁻¹ NPK), OF (chemical fertilizer + 1500 kg·ha⁻¹ organic carrier), BF1 (OF + 75 kg·ha⁻¹ marine actinomycetes), BF2 (OF + 75 kg·ha⁻¹ actinomycetes + 45 kg·ha⁻¹ phytase), BF3 (OF + 75 kg·ha⁻¹ actinomycetes + 45 kg·ha⁻¹ mycorrhizal fungi + 45 kg·ha⁻¹ phytase), and BF4 (OF + 75 kg·ha⁻¹ actinomycetes + 45 kg·ha⁻¹ mycorrhizal fungi + 45 kg·ha⁻¹ phytase + 45 kg·ha⁻¹ β–glucosidase). The results showed that biofertilizers significantly increased microbial abundance and enzyme activity. The integrated treatment BF4 notably enhanced topsoil fungal abundance by 188.1% and dehydrogenase activity in the 0–20 cm layer, while also increasing available phosphorus by 92.6% at maturity. Although BF4 improved soil properties the most, BF3 produced the highest maize yield—boosting grain output by 18.3% over CF—and improved stem diameter and chlorophyll content. Strong correlations between microbial parameters and enzyme activities indicated a nutrient-cycling mechanism driven by microorganisms, with topsoil fungal abundance positively linked to alkaline phosphatase activity (r = 0.72) and subsoil bacterial abundance associated with available phosphorus (r = 0.65), demonstrating microbial–mediated carbon–phosphorus coupling. In conclusion, microbial–enzyme biofertilizers, particularly BF4, provide a sustainable strategy for enhancing Albic soil fertility and crop productivity. Full article

Soil salinization leads to soil nutrient loss and decreased crop yield. This research aims to determine the optimal reduction rate of diammonium phosphate (DAP) and suitable microbial inoculant for alfalfa cultivation and nitrogen-level improvement in saline-alkali land. The experiment consisted of a factorial arrangement of three DAP fertilizer levels (X1, 60%; X2, 70%; and X3, 80%) and four microbial inoculants (Y1, rhizobial inoculant; Y2, phosphate-solubilizing microbial inoculant; Y3, composite microbial inoculant; and Y4, control) in a split-plot design. The results indicated that DAP fertilizer, microbial inoculant, and their interaction significantly affected (p < 0.05) forage yield, crude protein, available nitrogen (N), and enzyme activities. Under 80% DAP fertilizer combined with the composite microbial inoculant, forage yield, plant height, soil urease (S-UE), and ammonium nitrogen (NH₄⁺-N) reached maximum values of 17.1 t ha⁻¹, 65.7 cm, 292.3 μg d⁻¹ g⁻¹, and 3.1 mg kg⁻¹, respectively. However, the soil total nitrogen (TN) significantly increased at the 60% DAP fertilizer application rate (p < 0.05). Overall, this study demonstrates that co-application of DAP fertilizer with compound microbial inoculant delivers a green, science-based fertilization approach for improving nitrogen levels and alfalfa cultivation in saline-alkali soils. Full article