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Search Results (306)

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Keywords = local chicken

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26 pages, 3940 KiB  
Article
In Vitro Proof-of-Concept Study: Lidocaine and Epinephrine Co-Loaded in a Mucoadhesive Liquid Crystal Precursor System for Topical Oral Anesthesia
by Giovana Maria Fioramonti Calixto, Aylla Mesquita Pestana, Arthur Antunes Costa Bezerra, Marcela Tavares Luiz, Jonatas Lobato Duarte, Marlus Chorilli and Michelle Franz-Montan
Pharmaceuticals 2025, 18(8), 1166; https://doi.org/10.3390/ph18081166 - 6 Aug 2025
Abstract
Background: Local anesthesia is essential for most dental procedures, but its parenteral administration is often painful. Topical anesthetics are commonly used to minimize local anesthesia pain; however, commercial formulations fail to fully prevent the discomfort of local anesthetic injection. Methods: We developed and [...] Read more.
Background: Local anesthesia is essential for most dental procedures, but its parenteral administration is often painful. Topical anesthetics are commonly used to minimize local anesthesia pain; however, commercial formulations fail to fully prevent the discomfort of local anesthetic injection. Methods: We developed and characterized a novel lidocaine and epinephrine co-loaded liquid crystalline precursor system (LCPS) for topical anesthesia. The formulation was structurally characterized using polarized light microscopy (PLM) and small-angle X-ray scattering (SAXS). Rheological behavior was assessed through continuous and oscillatory rheological analyses. Texture profile analysis, in vitro mucoadhesive force evaluation, in vitro drug release and permeation studies, and an in vivo toxicity assay using the chicken chorioallantoic membrane (CAM) model were also conducted. Results: PLM and SAXS confirmed the transition of the LCPS from a microemulsion to a lamellar liquid crystalline structure upon contact with artificial saliva. This transition enhanced formulation consistency by over 100 times and tripled mucoadhesion strength. The LCPS also provided controlled drug release, reducing permeation flow by 93% compared to the commercial formulation. Importantly, the CAM assay indicated that the LCPS exhibited similar toxicity to the commercial product. Conclusions: The developed LCPS demonstrated promising physicochemical and biological properties for topical anesthesia, including enhanced mucoadhesion, controlled drug delivery, and acceptable biocompatibility. These findings support its potential for in vivo application and future clinical use to reduce pain during dental anesthesia procedures. Full article
(This article belongs to the Special Issue Advances in Topical and Mucosal Drug Delivery Systems)
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19 pages, 5733 KiB  
Article
The Production Optimization of a Thermostable Phytase from Bacillus subtilis SP11 Utilizing Mustard Meal as a Substrate
by Md. Al Muid Khan, Sabina Akhter, Tanjil Arif, Md. Mahmuduzzaman Mian, Md. Arafat Al Mamun, Muhammad Manjurul Karim and Shakila Nargis Khan
Fermentation 2025, 11(8), 452; https://doi.org/10.3390/fermentation11080452 - 3 Aug 2025
Viewed by 167
Abstract
Phytate, an antinutritional molecule in poultry feed, can be degraded by applying phytase, but its use in low- and middle-income countries is often limited due to importation instead of local production. Here, inexpensive raw materials were used to optimize the production of a [...] Read more.
Phytate, an antinutritional molecule in poultry feed, can be degraded by applying phytase, but its use in low- and middle-income countries is often limited due to importation instead of local production. Here, inexpensive raw materials were used to optimize the production of a thermostable phytase from an indigenous strain of Bacillus subtilis SP11 that was isolated from a broiler farm in Dhaka. SP11 was identified using 16s rDNA and the fermentation of phytase was optimized using a Plackett–Burman design and response surface methodology, revealing that three substrates, including the raw material mustard meal (2.21% w/v), caused a maximum phytase production of 436 U/L at 37 °C and 120 rpm for 72 h, resulting in a 3.7-fold increase compared to unoptimized media. The crude enzyme showed thermostability up to 80 °C (may withstand the feed pelleting process) with an optimum pH of 6 (near pH of poultry small-intestine), while retaining 96% activity at 41 °C (the body temperature of the chicken). In vitro dephytinization demonstrated its applicability, releasing 978 µg of inorganic phosphate per g of wheat bran per hour. This phytase has the potential to reduce the burden of phytase importation in Bangladesh by making local production and application possible, contributing to sustainable poultry nutrition. Full article
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14 pages, 1170 KiB  
Article
Egg Quality and Nutritional Profile of Three Sicilian Autochthonous Chicken Breeds: Siciliana, Cornuta di Caltanissetta, and Valplatani
by Vittorio Lo Presti, Francesca Accetta, Maria Elena Furfaro, Antonino Nazareno Virga and Ambra Rita Di Rosa
Foods 2025, 14(15), 2571; https://doi.org/10.3390/foods14152571 - 22 Jul 2025
Viewed by 260
Abstract
The conservation of poultry biodiversity is a growing global priority, yet it necessarily relies on the scientific valorization of specific local breeds. This study aimed to characterize the lipid composition and cholesterol content of eggs from three native Sicilian chicken breeds (Cornuta, Valplatani, [...] Read more.
The conservation of poultry biodiversity is a growing global priority, yet it necessarily relies on the scientific valorization of specific local breeds. This study aimed to characterize the lipid composition and cholesterol content of eggs from three native Sicilian chicken breeds (Cornuta, Valplatani, and Siciliana) reared under semi-extensive conditions, in order to evaluate their nutritional potential and support biodiversity preservation strategies. A total of 170 eggs from 11 farms were analyzed. Fatty acid composition and nutritional indices (atherogenic index, thrombogenic index, n-6/n-3 ratio, HH index) were determined according to ISO and AOAC standards. Results showed that Cornuta eggs exhibited the most favorable lipid profile, with the lowest saturated fatty acid (SFA) content (38.55%), the lowest n-6/n-3 ratio (7.35), and the best values for AI (0.52), TI (1.22), and HH (2.02), compared to Valplatani and Siciliana. Conversely, the lowest cholesterol content was found in Siciliana eggs (1463.58 mg/kg), significantly lower than Cornuta (1789 mg/kg; p < 0.05). Although no commercial hybrids were included, the literature data were used for contextual comparison. These findings suggest that native breeds may produce eggs with functional nutritional properties, supporting both healthier food choices and local genetic conservation. Moreover, this study provides a replicable framework for the nutritional valorization of underutilized poultry breeds, reinforcing the role of biodiversity in sustainable food systems. Full article
(This article belongs to the Special Issue Eggs and Egg Products: Production, Processing, and Safety)
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12 pages, 2564 KiB  
Article
Genetic Diversity and Population Structure Analysis of Luhua chickens Based on Genome-Wide Markers
by Qianwen Yang, Wei Han, Jun Yan, Chenghao Zhou, Guohui Li, Huiyong Zhang, Jianmei Yin and Xubin Lu
Animals 2025, 15(14), 2071; https://doi.org/10.3390/ani15142071 - 14 Jul 2025
Viewed by 268
Abstract
The Luhua chicken is an outstanding local breed in China that has been placed under conservation due to the impact of specialized breeding and the widespread adoption of commercial varieties. As such, this study analyzed reproductive traits across three consecutive generations and utilized [...] Read more.
The Luhua chicken is an outstanding local breed in China that has been placed under conservation due to the impact of specialized breeding and the widespread adoption of commercial varieties. As such, this study analyzed reproductive traits across three consecutive generations and utilized whole-genome resequencing data from 60 Luhua chickens to assess conservation efficacy through genetic diversity, run of homozygosity (ROH) distribution, kinship, and population structure so as to better conserve the breed. The results show that, across generations, the body weight at first egg increased, the age at first egg was delayed, and the egg weight at first laying increased. No significant variations were found in the body weight at 300 d or the total egg number. The key genetic parameters of the polymorphism information content (PIC), expected heterozygosity (HE), observed heterozygosity (HO), and mean identical-by-state (IBS) distance were 0.234, 0.351, 0.277, and 0.782, respectively. The majority of ROHs ranged from 0.5 to 1 Mb, and the inbreeding coefficient based on ROHs was calculated at 0.021. The findings reveal that these traits remained unchanged across the three generations. Our research suggests that optimizing the mating plan of Luhua chickens is essential to minimize inbreeding risk. Furthermore, the methodology applied in this study provides a valuable reference for the conservation monitoring of other indigenous chicken breeds. Full article
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29 pages, 5277 KiB  
Article
DualHet-YOLO: A Dual-Backbone Heterogeneous YOLO Network for Inspection Robots to Recognize Yellow-Feathered Chicken Behavior in Floor-Raised House
by Yaobo Zhang, Linwei Chen, Hongfei Chen, Tao Liu, Jinlin Liu, Qiuhong Zhang, Mingduo Yan, Kaiyue Zhao, Shixiu Zhang and Xiuguo Zou
Agriculture 2025, 15(14), 1504; https://doi.org/10.3390/agriculture15141504 - 12 Jul 2025
Viewed by 293
Abstract
The behavior of floor-raised chickens is closely linked to their health status and environmental comfort. As a type of broiler chicken with special behaviors, understanding the daily actions of yellow-feathered chickens is crucial for accurately checking their health and improving breeding practices. Addressing [...] Read more.
The behavior of floor-raised chickens is closely linked to their health status and environmental comfort. As a type of broiler chicken with special behaviors, understanding the daily actions of yellow-feathered chickens is crucial for accurately checking their health and improving breeding practices. Addressing the challenges of high computational complexity and insufficient detection accuracy in existing floor-raised chicken behavior recognition models, a lightweight behavior recognition model was proposed for floor-raised yellow-feathered chickens, based on a Dual-Backbone Heterogeneous YOLO Network. Firstly, DualHet-YOLO enhances the feature extraction capability of floor-raised chicken images through a dual-path feature map extraction architecture and optimizes the localization and classification of multi-scale targets using a TriAxis Unified Detection Head. Secondly, a Proportional Scale IoU loss function is introduced that improves regression accuracy. Finally, a lightweight structure Eff-HetKConv was designed, significantly reducing model parameters and computational complexity. Experiments on a private floor-raised chicken behavior dataset show that, compared with the baseline YOLOv11 model, the DualHet-YOLO model increases the mAP for recognizing five behaviors—pecking, resting, walking, dead, and inactive—from 77.5% to 84.1%. Meanwhile, it reduces model parameters by 14.6% and computational complexity by 29.2%, achieving a synergistic optimization of accuracy and efficiency. This approach provides an effective solution for lightweight object detection in poultry behavior recognition. Full article
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27 pages, 1957 KiB  
Article
Vegetable Productivity, Soil Physicochemical and Biochemical Properties, and Microbiome in Response to Organic Substitution in an Intensive Greenhouse Production System
by Xing Liu, Haohui Xu, Yanan Cheng, Ying Zhang, Yonggang Li, Fei Wang, Changwei Shen and Bihua Chen
Agriculture 2025, 15(14), 1493; https://doi.org/10.3390/agriculture15141493 - 11 Jul 2025
Viewed by 282
Abstract
Partial substitution of mineral N fertilizer with manure (organic substitution) is considered as an effective way to reduce N input in intensive agroecosystems. Here, based on a 3-year field experiment, we assessed the influence of different organic substitution ratios (15%, 30%, 45%, and [...] Read more.
Partial substitution of mineral N fertilizer with manure (organic substitution) is considered as an effective way to reduce N input in intensive agroecosystems. Here, based on a 3-year field experiment, we assessed the influence of different organic substitution ratios (15%, 30%, 45%, and 60%, composted chicken manure applied) on vegetable productivity and soil physicochemical and biochemical properties as well as microbiome (metagenomic sequencing) in an intensive greenhouse production system (cucumber-tomato rotation). Organic substitution ratio in 30% got a balance between stable vegetable productivity and maximum N reduction. However, higher substitution ratios decreased annual vegetable yield by 23.29–32.81%. Organic substitution (15–45%) improved soil fertility (12.18–19.94% increase in soil total organic carbon content) and such improvement was not obtained by higher substitution ratio. Soil mean enzyme activity was stable to organic substitution despite the activities of some selected enzymes changed (catalase, urease, sucrase, and alkaline phosphatase). Organic substitution changed the species and functional structures rather than diversity of soil microbiome, and enriched the genes related to soil denitrification (including nirK, nirS, and nosZ). Besides, the 30% of organic substitution obviously enhanced soil microbial network complexity and this enhancement was mainly associated with altered soil pH. At the level tested herein, organic substitution ratio in 30% was suitable for greenhouse vegetable production locally. Long-term influence of different organic substitution ratios on vegetable productivity and soil properties in intensive greenhouse system needs to be monitored. Full article
(This article belongs to the Section Agricultural Systems and Management)
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21 pages, 7490 KiB  
Article
Exploring the Biocultural Nexus of Gastrodia elata in Zhaotong: A Pathway to Ecological Conservation and Economic Growth
by Yanxiao Fan, Menghua Tian, Defen Hu and Yong Xiong
Biology 2025, 14(7), 846; https://doi.org/10.3390/biology14070846 - 11 Jul 2025
Viewed by 505
Abstract
Gastrodia elata, known as Tianma in Chinese, is a valuable medicinal and nutritional resource. The favorable climate of Zhaotong City, Yunnan Province, China, facilitates its growth and nurtures rich biocultural diversity associated with Tianma in the region. Local people not only cultivate [...] Read more.
Gastrodia elata, known as Tianma in Chinese, is a valuable medicinal and nutritional resource. The favorable climate of Zhaotong City, Yunnan Province, China, facilitates its growth and nurtures rich biocultural diversity associated with Tianma in the region. Local people not only cultivate Tianma as a traditional crop but have also developed a series of traditional knowledge related to its cultivation, processing, medicinal use, and culinary applications. In this study, field surveys employing ethnobotanical methods were conducted in Yiliang County, Zhaotong City, from August 2020 to May 2024, focusing on Tianma. A total of 114 key informants participated in semi-structured interviews. The survey documented 23 species (and forms) from seven families related to Tianma cultivation. Among them, there were five Gastrodia resource taxa, including one original species, and four forms. These 23 species served as either target cultivated species, symbiotic fungi (promoting early-stage Gastrodia germination), or fungus-cultivating wood. The Fagaceae family, with 10 species, was the most dominant, as its dense, starch-rich wood decomposes slowly, providing Armillaria with a long-term, stable nutrient substrate. The cultural importance (CI) statistics revealed that Castanea mollissima, G. elata, G. elata f. flavida, G. elata f. glauca, G. elata f. viridis, and Xuehong Tianma (unknown form) exhibited relatively high CI values, indicating their crucial cultural significance and substantial value within the local community. In local communities, traditionally processed dried Tianma tubers are mainly used to treat cardiovascular diseases and also serve as a culinary ingredient, with its young shoots and tubers incorporated into dishes such as cold salads and stewed chicken. To protect the essential ecological conditions for Tianma, the local government has implemented forest conservation measures. The sustainable development of the Tianma industry has alleviated poverty, protected biodiversity, and promoted local economic growth. As a distinctive plateau specialty of Zhaotong, Tianma exemplifies how biocultural diversity contributes to ecosystem services and human well-being. This study underscores the importance of biocultural diversity in ecological conservation and the promotion of human welfare. Full article
(This article belongs to the Special Issue Young Researchers in Conservation Biology and Biodiversity)
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19 pages, 147602 KiB  
Article
Image Classification of Chicken Breed and Gender Using Deep Learning
by Liuchao Zhu, Zixin Chen, Hanwen Zhang, Yanju Shan, Gaige Ji, Huanliang Xu, Jingting Shu and Junxian Huang
AgriEngineering 2025, 7(7), 211; https://doi.org/10.3390/agriengineering7070211 - 2 Jul 2025
Viewed by 367
Abstract
Identifying chicken breeds and genders accurately is essential for conserving local breeds and maintaining gender ratios on farms. This study developed a system based on the Swin Transformer that efficiently and accurately classifies chicken breeds and genders. The system incorporates a target detection [...] Read more.
Identifying chicken breeds and genders accurately is essential for conserving local breeds and maintaining gender ratios on farms. This study developed a system based on the Swin Transformer that efficiently and accurately classifies chicken breeds and genders. The system incorporates a target detection module to eliminate background noise and employs data augmentation techniques to prevent overfitting. A high-quality dataset, consisting of 10,482 locally captured images representing 13 Chinese native chicken breeds, was created for training and testing the model. The system was evaluated using a custom dataset and compared against popular image classification models, such as ResNet and ViT. Results indicate that the target detection module and data augmentation effectively improved the model’s performance. Additionally, strategies such as increasing the input size appropriately and utilizing pre-trained weights significantly enhanced the model’s accuracy. Interpretability analysis reveals that the system successfully identifies specific chicken body parts across different breeds and genders, aligning with human visual attention and highlighting its effectiveness. This work provides a robust solution for poultry management, aiding in tasks such as breed selection, gender ratio control, and genetic conservation. Furthermore, the methodology and dataset presented in this research provide a foundation for future studies in agricultural computer vision applications. Full article
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13 pages, 741 KiB  
Article
Reducing Cation Leaching and Improving Greenhouse Cucumber’s Nutritional Yield Through Optimized Organic–Inorganic Fertilization
by Xilin Guan, Wenqing Cao, Dunyi Liu, Huanyu Zhao, Ming Lu, Xinhao Gao, Xinping Chen, Yumin Liu and Shenzhong Tian
Agronomy 2025, 15(7), 1523; https://doi.org/10.3390/agronomy15071523 - 23 Jun 2025
Viewed by 379
Abstract
Excessive nutrient inputs from manure and synthetic fertilizers have caused great challenges for sustainable vegetable production. There is limited information about the nutritional yields and leaching losses of potassium (K), calcium (Ca), and magnesium (Mg) under various organic–inorganic fertilization practices. We hypothesized that [...] Read more.
Excessive nutrient inputs from manure and synthetic fertilizers have caused great challenges for sustainable vegetable production. There is limited information about the nutritional yields and leaching losses of potassium (K), calcium (Ca), and magnesium (Mg) under various organic–inorganic fertilization practices. We hypothesized that nutritional yields and cation leaching would be influenced by different fertilization practices. A two-year cucumber-cultivating experiment was conducted in North China with the following three treatments: Farmers’ Traditional Practice (FP), based on local farmers’ practices; Current Recommended Nutrient Management (CRNM), based on pieces of literature, bio-organic fertilizer, and kaolin replacing chicken manure in FP; Nutrient Balance Management (DBNM), based on target yields and plant-based amendments replacing bio-organic fertilizers. The nutritional yields of Ca and Mg under CRNM and DBNM were 26.4–39.6% and 20.3–32.5% higher than FP. The K, Ca, and Mg leaching under CRNM were significantly reduced by 41.1%, 18.9%, and 18.5%, compared with FP. Ca leaching under DBNM was further significantly reduced by 7.9%. A significant negative relationship was observed between the leaching losses of K, Ca, and Mg and the surface soil pH (0–20 cm). These findings suggest that DBNM could play an important role in obtaining higher nutritional yields, reducing leaching losses, and alleviating soil acidification in vegetable production. Full article
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21 pages, 1372 KiB  
Article
Evaluating Good Husbandry Practices and Organic Fermented Additives for Coccidiosis Control in a Pilot Study Using Slow-Growing Broilers
by Anabel E. Rodriguez, Jesica D. Britez, María Luz Pisón-Martínez, Fernando O. Delgado, Facundo Balbiani, Cecilia C. Berardo, César Gramaglia, Facundo Cuba, Tomás J. Poklepovich, Claudia Moreno, Gladys Francinelli, Gabriel Morici, Martín Arias, Javier Schapiro, Pablo Barbano and Mariela L. Tomazic
Animals 2025, 15(12), 1752; https://doi.org/10.3390/ani15121752 - 13 Jun 2025
Viewed by 426
Abstract
The Argentine Campero-INTA slow-growing chicken, a widely used breed in family poultry farming, faces high coccidiosis prevalence, impairing productivity. Control often relies on management and drugs due to vaccination costs. This pilot study assessed the breed’s susceptibility to local Eimeria and the impact [...] Read more.
The Argentine Campero-INTA slow-growing chicken, a widely used breed in family poultry farming, faces high coccidiosis prevalence, impairing productivity. Control often relies on management and drugs due to vaccination costs. This pilot study assessed the breed’s susceptibility to local Eimeria and the impact of good animal welfare practices (AWPs) and an organic fermented additive, locally produced, combined with AWPs (OF-AWPs). Two trials evaluated productive (body weight gain and feed conversion), infection (oocyst excretion and lesion score), and histopathological parameters (villus height and crypt depth). The productivity (PI) and anticoccidial (ACI) indexes were calculated. Metagenomic analysis of the additive was also conducted. Mild to moderate coccidiosis significantly reduced PI (7.99–16.83 vs. 29.29 in unchallenged controls). In the second trial, AWPs showed good anticoccidial efficacy (ACI 173.9), while OF-AWPs demonstrated high efficacy, especially in birds of 28 days (ACI 180.6), improving productive parameters, reducing oocyst shedding, and enhancing the villus height to crypt depth ratio. Over a 75-day cycle, the OF-AWP increased the PI by 24.44% compared to untreated chickens (108.8 vs. 87.43). Lactic acid bacteria were the main component of the organic fermented additive. This research highlights the potential of an agroecological strategy to manage coccidiosis in Campero-INTA chickens. Full article
(This article belongs to the Section Poultry)
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18 pages, 2836 KiB  
Article
Characterization of the Antigenic and Immunogenic Properties of the Gametocyte Antigen 56 from Eimeria necatrix
by Feiyan Wang, Liqin Cao, Lele Wang, Jinjun Xu, Jianping Tao and Dandan Liu
Animals 2025, 15(12), 1750; https://doi.org/10.3390/ani15121750 - 13 Jun 2025
Viewed by 472
Abstract
Coccidiosis, caused by Eimeria spp., significantly reduces poultry productivity and causes major economic losses. Traditional control methods are limited by drug resistance and high production costs. Recent genomic and bioinformatic advances have enabled the identification of novel antigens, making recombinant subunit vaccines a [...] Read more.
Coccidiosis, caused by Eimeria spp., significantly reduces poultry productivity and causes major economic losses. Traditional control methods are limited by drug resistance and high production costs. Recent genomic and bioinformatic advances have enabled the identification of novel antigens, making recombinant subunit vaccines a promising next-generation strategy by eliciting robust cellular and humoral immune responses. This study investigates the E. necatrix gametocyte protein 56 (EnGAM56) as a potential candidate for recombinant subunit vaccines. The full-length E. necatrix gametocyte gam56 gene (Engam56-F) was amplified, expressed in vitro, and characterized via SDS-PAGE and Western blot. Immunofluorescence assays revealed that EnGAM56-F is specifically localized in gametocytes and unsporulated oocysts. Chickens immunized with recombinant proteins (rEnGAM56-F and rEnGAM56-T) were evaluated for immunoprotection against E. necatrix infection through lesion scores, weight gain, oocyst production, anticoccidial index (ACI), and antibody and cytokine levels. The synergistic effects were evaluated by employing various combinations of recombinant proteins, including rEtGAM22, rEtGAM56-T, and rEtGAM59. Results showed that EnGAM56-F encodes a 468-amino acid protein with distinct tyrosine-serine-rich and proline-methionine-rich regions. rEnGAM56-F was specifically recognized by both anti-6 × His tag antibodies and convalescent serum from chickens infected with E. necatrix. Both rEnGAM56-F and rEnGAM56-T provided immune protection, with rEnGAM56-T showing superior efficacy. The combination of rEnGAM (22 + 59 + 56-T) yielded the strongest immune response, followed by rEnGAM (22 + 56-T). These findings highlight the potential of EnGAM56 as a candidate for recombinant subunit anticoccidial vaccines. Full article
(This article belongs to the Special Issue Coccidian Parasites: Epidemiology, Control and Prevention Strategies)
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18 pages, 2189 KiB  
Article
Changes of CB1 Receptor Expression in Tissues of Cocaine-Exposed Eels
by Lorenzo Riccio, Teresa Chianese, Aldo Mileo, Sabrina Balsamo, Rosaria Sciarrillo, Roberta Gatta, Luigi Rosati, Maria De Falco and Anna Capaldo
Animals 2025, 15(12), 1734; https://doi.org/10.3390/ani15121734 - 12 Jun 2025
Viewed by 1071
Abstract
Previous studies performed on the European eel Anguilla anguilla showed changes in the morphology and physiology of several tissues after exposure to environmental cocaine concentrations. To better understand the model through which cocaine produced its effects on these tissues, we investigated whether there [...] Read more.
Previous studies performed on the European eel Anguilla anguilla showed changes in the morphology and physiology of several tissues after exposure to environmental cocaine concentrations. To better understand the model through which cocaine produced its effects on these tissues, we investigated whether there were alterations in the expression of cannabinoid CB1 receptor (CB1R). Indeed, the endocannabinoid system, and CB1R, regulate neurotransmission, neurodevelopment, embryonic development, reproduction, and the activity of the gastrointestinal system. CB1R has been detected in nervous and peripheral tissues in mammals, and orthologues of the mammalian CB1R are found throughout vertebrates including chicken, turtle, frog, and fish. Therefore, samples of gut, kidney, ovary, muscle, liver, skin, and gills from cocaine-exposed and non-exposed eels were processed for routine histology. Immunohistochemical analysis was carried out to evaluate the immunolocalization of the CB1R. Our results showed for the first time (1) the presence of CB1R in the peripheral tissues of the eel, and (2) statistically significant differences in the localization of CB1R in the gut, kidney, ovary, muscle, and liver of the eels exposed to cocaine, compared to controls. These results demonstrate the involvement of CB1R in cocaine effects and suggest its potential role as a biomarker of tissue alteration. Full article
(This article belongs to the Section Aquatic Animals)
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34 pages, 826 KiB  
Review
The Application of Microsatellite Markers as Molecular Tools for Studying Genomic Variability in Vertebrate Populations
by Roman O. Kulibaba, Kornsorn Srikulnath, Worapong Singchat, Yuriy V. Liashenko, Darren K. Griffin and Michael N. Romanov
Curr. Issues Mol. Biol. 2025, 47(6), 447; https://doi.org/10.3390/cimb47060447 - 11 Jun 2025
Viewed by 569
Abstract
Vertebrate molecular genetic research methods typically employ single genetic loci (monolocus markers) and those involving a variable number of loci (multilocus markers). The former often employ microsatellites that ensure accuracy in establishing inbreeding, tracking pan-generational dynamics of genetic parameters, assessing genetic purity, and [...] Read more.
Vertebrate molecular genetic research methods typically employ single genetic loci (monolocus markers) and those involving a variable number of loci (multilocus markers). The former often employ microsatellites that ensure accuracy in establishing inbreeding, tracking pan-generational dynamics of genetic parameters, assessing genetic purity, and facilitating genotype/phenotype correlations. They also enable the determination and identification of unique alleles by studying and managing marker-assisted breeding regimes to control the artificial selection of agriculturally important traits. Microsatellites consist of 2–6 nucleotides that repeat numerous times and are widely distributed throughout genomes. Their main advantages lie in their ease of use for PCR amplification, their known genome localization, and their incredible polymorphism (variability) levels. Robust lab-based molecular technologies are supplemented by high-quality statistics and bioinformatics and have been widely employed, especially in those instances when more costly, high throughput techniques are not available. Here, we consider that human and livestock microsatellite studies have been a “roadmap” for the genetics, breeding, and conservation of wildlife and rare animal breeds. In this context, we examine humans and other primates, cattle and other artiodactyls, chickens and other birds, carnivores (cats and dogs), elephants, reptiles, amphibians, and fish. Studies originally designed for mass animal production have thus been adapted to save less abundant species, highlighting the need for molecular scientists to consider where research may be applied in different disciplines. Full article
(This article belongs to the Section Biochemistry, Molecular and Cellular Biology)
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19 pages, 7949 KiB  
Article
Genome-Wide Association Analysis of Flavor Precursor Traits in Chengkou Mountain Chicken
by Haiwei Wang, Yu Huang, Lingbin Liu, Xin Zhang, Donghang Deng, Zhen Wang, Guangliang Gao and Qigui Wang
Animals 2025, 15(12), 1726; https://doi.org/10.3390/ani15121726 - 11 Jun 2025
Viewed by 982
Abstract
Chengkou mountain chicken, a Chinese indigenous breed, exhibits unique flavor characteristics. However, the genetic basis of its flavor precursor substances remains unexplored. We performed a genome-wide association study (GWAS) using low-coverage whole-genome sequencing (lcWGS) and genotype imputation to explore genetic markers linked to [...] Read more.
Chengkou mountain chicken, a Chinese indigenous breed, exhibits unique flavor characteristics. However, the genetic basis of its flavor precursor substances remains unexplored. We performed a genome-wide association study (GWAS) using low-coverage whole-genome sequencing (lcWGS) and genotype imputation to explore genetic markers linked to flavor precursors (nucleotides, amino acids, etc.) in Chengkou mountain chicken breast muscle. We identified 44 SNPs potentially or significantly associated with flavor precursor traits and localized 18 genes. Functional analysis revealed eight important candidate genes, including ZBTB20, RFX4, MAMLD1, SYN3, ABTB3, PRPF39, LRFN5, and DGCR14, which may play key roles in influencing flavor precursor substances. Moreover, two SNPs residing in the haplotype block (53,448,483 bp to 53,450,834 bp) on chromosome 1 were significantly associated with a di-unsaturated acyl chain (C20:2) residue and mapped to the ABTB3 gene. This study analyzes the composition of flavor precursor substances in the pectoralis major muscle of Chengkou mountain chicken. Moreover, the SNPs, haplotypes, and candidate genes identified in this study can be used to improve the accuracy of the marker-assisted selection of traits related to flavor precursor substances in the breast muscle of chicken. In addition, the candidate genes that are significantly associated with these traits will potentially lay the foundation for future genetic selection aimed at improving the flavor traits of chicken meat. Full article
(This article belongs to the Special Issue Molecular Markers and Genomic Selection in Farm Animal Improvement)
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21 pages, 9038 KiB  
Article
Deep Learning-Based Detection and Digital Twin Implementation of Beak Deformities in Caged Layer Chickens
by Hengtai Li, Hongfei Chen, Jinlin Liu, Qiuhong Zhang, Tao Liu, Xinyu Zhang, Yuhua Li, Yan Qian and Xiuguo Zou
Agriculture 2025, 15(11), 1170; https://doi.org/10.3390/agriculture15111170 - 29 May 2025
Viewed by 783
Abstract
With the increasing urgency for digital transformation in large-scale caged layer farms, traditional methods for monitoring the environment and chicken health, which often rely on human experience, face challenges related to low efficiency and poor real-time performance. In this study, we focused on [...] Read more.
With the increasing urgency for digital transformation in large-scale caged layer farms, traditional methods for monitoring the environment and chicken health, which often rely on human experience, face challenges related to low efficiency and poor real-time performance. In this study, we focused on caged layer chickens and proposed an improved abnormal beak detection model based on the You Only Look Once v8 (YOLOv8) framework. Data collection was conducted using an inspection robot, enhancing automation and consistency. To address the interference caused by chicken cages, an Efficient Multi-Scale Attention (EMA) mechanism was integrated into the Spatial Pyramid Pooling-Fast (SPPF) module within the backbone network, significantly improving the model’s ability to capture fine-grained beak features. Additionally, the standard convolutional blocks in the neck of the original model were replaced with Grouped Shuffle Convolution (GSConv) modules, effectively reducing information loss during feature extraction. The model was deployed on edge computing devices for the real-time detection of abnormal beak features in layer chickens. Beyond local detection, a digital twin remote monitoring system was developed, combining three-dimensional (3D) modeling, the Internet of Things (IoT), and cloud-edge collaboration to create a dynamic, real-time mapping of physical layer farms to their virtual counterparts. This innovative approach not only improves the extraction of subtle features but also addresses occlusion challenges commonly encountered in small target detection. Experimental results demonstrate that the improved model achieved a detection accuracy of 92.7%. In terms of the comprehensive evaluation metric (mAP), it surpassed the baseline model and YOLOv5 by 2.4% and 3.2%, respectively. The digital twin system also proved stable in real-world scenarios, effectively mapping physical conditions to virtual environments. Overall, this study integrates deep learning and digital twin technology into a smart farming system, presenting a novel solution for the digital transformation of poultry farming. Full article
(This article belongs to the Section Artificial Intelligence and Digital Agriculture)
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