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Search Results (410)

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18 pages, 2376 KiB  
Article
Selection and Characterisation of Elite Mesorhizobium spp. Strains That Mitigate the Impact of Drought Stress on Chickpea
by María Camacho, Francesca Vaccaro, Pilar Brun, Francisco Javier Ollero, Francisco Pérez-Montaño, Miriam Negussu, Federico Martinelli, Alessio Mengoni, Dulce Nombre Rodriguez-Navarro and Camilla Fagorzi
Agriculture 2025, 15(15), 1694; https://doi.org/10.3390/agriculture15151694 - 5 Aug 2025
Abstract
The chickpea (Cicer arietinum L.) is a key legume crop in Mediterranean agriculture, valued for its nutritional profile and adaptability. However, its productivity is severely impacted by drought stress. To identify microbial solutions that enhance drought resilience, we isolated seven Mesorhizobium strains [...] Read more.
The chickpea (Cicer arietinum L.) is a key legume crop in Mediterranean agriculture, valued for its nutritional profile and adaptability. However, its productivity is severely impacted by drought stress. To identify microbial solutions that enhance drought resilience, we isolated seven Mesorhizobium strains from chickpea nodules collected in southern Spain and evaluated their cultivar-specific symbiotic performance. Two commercial cultivars (Pedrosillano and Blanco Lechoso) and twenty chickpea germplasms were tested under growth chamber and greenhouse conditions, both with and without drought stress. Initial screening in a sterile substrate using nodulation assays, shoot/root dry weight measurements, and acetylene reduction assays identified three elite strains (ISC11, ISC15, and ISC25) with superior symbiotic performance and nitrogenase activity. Greenhouse trials under reduced irrigation demonstrated that several strain–cultivar combinations significantly mitigated drought effects on plant biomass, with specific interactions (e.g., ISC25 with RR-98 or BT6-19) preserving over 70% of shoot biomass relative to controls. Whole-genome sequencing of the elite strains revealed diverse taxonomic affiliations—ISC11 as Mesorhizobium ciceri, ISC15 as Mesorhizobium mediterraneum, and ISC25 likely representing a novel species. Genome mining identified plant growth-promoting traits including ACC deaminase genes (in ISC11 and ISC25) and genes coding for auxin biosynthesis-related enzymes. Our findings highlight the potential of targeted rhizobial inoculants tailored to chickpea cultivars to improve crop performance under water-limiting conditions. Full article
(This article belongs to the Special Issue Beneficial Microbes for Sustainable Crop Production)
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17 pages, 1195 KiB  
Article
Phytochemical Profiling, Antioxidant Capacity, and α-Amylase/α-Glucosidase Inhibitory Effects of 29 Faba Bean (Vicia faba L.) Varieties from China
by Ying Li, Zhihua Wang, Chengkai Mei, Wenqi Sun, Xingxing Yuan, Jing Wang and Wuyang Huang
Biology 2025, 14(8), 982; https://doi.org/10.3390/biology14080982 (registering DOI) - 2 Aug 2025
Viewed by 226
Abstract
Faba bean (Vicia faba L.), a nutrient-rich legume beneficial to human health, is valued for its high L-3,4-dihydroxyphenylalanine (L-DOPA) and phenolic content. This study investigated phytochemical diversity and bioactivity across 29 Chinese faba bean varieties. Phenolics were profiled using ultrahigh-performance liquid chromatography [...] Read more.
Faba bean (Vicia faba L.), a nutrient-rich legume beneficial to human health, is valued for its high L-3,4-dihydroxyphenylalanine (L-DOPA) and phenolic content. This study investigated phytochemical diversity and bioactivity across 29 Chinese faba bean varieties. Phenolics were profiled using ultrahigh-performance liquid chromatography with quadrupole time-of-flight mass spectrometry (UPLC-QTOF-MS) and quantified via high-performance liquid chromatography (HPLC). Antioxidant capacity was evaluated, including DPPH (2,2-diphenyl-1-picrylhydrazyl), ABTS (2,2-azinobis (3-ethylbenzothiazoline-6-sulfonic acid)) radical scavenging activity, and ferric reducing antioxidant power (FRAP), along with α-amylase/α-glucosidase inhibitory effects. Twenty-five phenolics were identified, including L-DOPA (11.96–17.93 mg/g, >70% of total content), seven phenolic acids, and seventeen flavonoids. L-DOPA showed potent enzyme inhibition (IC50 values of 22.45 μM for α-amylase and 16.66 μM for α-glucosidase) but demonstrated limited antioxidant effects. Lincan 13 (Gansu) exhibited the strongest antioxidant activity (DPPH, 16.32 μmol trolox/g; ABTS, 5.85 μmol trolox/g; FRAP, 21.38 mmol Fe2+/g), which correlated with it having the highest flavonoid content (40.51 mg rutin/g), while Yican 4 (Yunnan) showed the strongest α-amylase inhibition (43.33%). Correlation analysis confirmed flavonoids as the primary antioxidants, and principal component analysis (PCA) revealed geographical trends (e.g., Jiangsu varieties were particularly phenolic-rich). These findings highlight faba beans’ potential as functional foods and guide genotype selection in targeted breeding programs aimed at enhancing health benefits. Full article
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18 pages, 1289 KiB  
Article
Harnessing Extremophile Bacillus spp. for Biocontrol of Fusarium solani in Phaseolus vulgaris L. Agroecosystems
by Tofick B. Wekesa, Justus M. Onguso, Damaris Barminga and Ndinda Kavesu
Bacteria 2025, 4(3), 39; https://doi.org/10.3390/bacteria4030039 - 1 Aug 2025
Viewed by 114
Abstract
Common bean (Phaseolus vulgaris L.) is a critical protein-rich legume supporting food and nutritional security globally. However, Fusarium wilt, caused by Fusarium solani, remains a major constraint to production, with yield losses reaching up to 84%. While biocontrol strategies have been [...] Read more.
Common bean (Phaseolus vulgaris L.) is a critical protein-rich legume supporting food and nutritional security globally. However, Fusarium wilt, caused by Fusarium solani, remains a major constraint to production, with yield losses reaching up to 84%. While biocontrol strategies have been explored, most microbial agents are sourced from mesophilic environments and show limited effectiveness under abiotic stress. Here, we report the isolation and characterization of extremophilic Bacillus spp. from the hypersaline Lake Bogoria, Kenya, and their biocontrol potential against F. solani. From 30 isolates obtained via serial dilution, 9 exhibited antagonistic activity in vitro, with mycelial inhibition ranging from 1.07–1.93 cm 16S rRNA sequencing revealed taxonomic diversity within the Bacillus genus, including unique extremotolerant strains. Molecular screening identified genes associated with the biosynthesis of antifungal metabolites such as 2,4-diacetylphloroglucinol, pyrrolnitrin, and hydrogen cyanide. Enzyme assays confirmed substantial production of chitinase (1.33–3160 U/mL) and chitosanase (10.62–28.33 mm), supporting a cell wall-targeted antagonism mechanism. In planta assays with the lead isolate (B7) significantly reduced disease incidence (8–35%) and wilt severity (1–5 affected plants), while enhancing root colonization under pathogen pressure. These findings demonstrate that extremophile-derived Bacillus spp. possess robust antifungal traits and highlight their potential as climate-resilient biocontrol agents for sustainable bean production in arid and semi-arid agroecosystems. Full article
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22 pages, 2898 KiB  
Article
Genetic Variability and Trait Correlations in Lotus corniculatus L. as a Basis for Sustainable Forage Breeding
by Cristian Bostan, Nicolae Marinel Horablaga, Marius Boldea, Emilian Onișan, Christianna Istrate-Schiller, Dorin Rechitean, Luminita Cojocariu, Alina Laura Agapie, Adina Horablaga, Ioan Sarac, Sorina Popescu, Petru Rain and Ionel Samfira
Sustainability 2025, 17(15), 7007; https://doi.org/10.3390/su17157007 - 1 Aug 2025
Viewed by 170
Abstract
Lotus corniculatus L. is a valuable fodder legume, recognized for its ecological adaptability and high potential for production and fodder quality. In this study, 18 genotypes collected from wild flora were analyzed to highlight genetic variability and facilitate the selection of genotypes with [...] Read more.
Lotus corniculatus L. is a valuable fodder legume, recognized for its ecological adaptability and high potential for production and fodder quality. In this study, 18 genotypes collected from wild flora were analyzed to highlight genetic variability and facilitate the selection of genotypes with superior potential. The collection area was in the western part of Romania and featured a diverse topography, including parts of the Banat Plain, the Banat Hills, and the Southern and Western Carpathians. The genotypes selected from the wild flora were cultivated and evaluated for morpho-productive and forage quality traits, including pod weight, average number of seeds/pods, green mass production, and protein percentage. PCA highlighted the main components explaining the variability, and K-means clustering allowed for the identification of groups of genotypes with similar performances. ANOVA showed statistically significant differences (p < 0.001) for all traits analyzed. According to the results, genotypes LV-LC-3, LV-LC-4, LV-LC-6, and LV-LC-16 showed high productive potential and were highlighted as the most valuable for advancing in the breeding program. The moderate relationships between traits confirm the importance of integrated selection. The identified genetic variability and selected genotypes support the implementation of effective breeding strategies to obtain high-performance Lotus corniculatus L., adapted to local soil and climate conditions and with a superior forage yield. Full article
(This article belongs to the Section Sustainable Agriculture)
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15 pages, 7581 KiB  
Article
Complete Chloroplast Genome Sequence of Medicago falcata: Comparative Analyses with Other Species of Medicago
by Wei Duan, Xueli Zhang, Yuxiang Wang and Qian Li
Agronomy 2025, 15(8), 1856; https://doi.org/10.3390/agronomy15081856 - 31 Jul 2025
Viewed by 256
Abstract
Medicago falcata is one of the most important perennial forage legumes in the Medicago genus. In this study, we reported the complete chloroplast genome of two M. falcata ecotypes grown in different regions, and compared them with those of Medicago truncatula and Medicago [...] Read more.
Medicago falcata is one of the most important perennial forage legumes in the Medicago genus. In this study, we reported the complete chloroplast genome of two M. falcata ecotypes grown in different regions, and compared them with those of Medicago truncatula and Medicago sativa. We found that the M. falcata chloroplast genome lacks a typical quadripartite structure, containing 78 protein-coding genes, 30 tRNA genes, and four ribosomal RNA genes. They shared high conservation in size, genome structure, gene order, gene number and GC content with those of M. truncatula and M. sativa. High nucleotide diversity occurred in the coding gene regions of rps16, rps3, and ycf4 genes. Meanwhile, mononucleotide repeats are the most abundant repeat type, followed by the di-, tri-, tetra-, and pentanucleotides, and forward repeats were more abundant than reverse and palindrome repeats for all these three Medicago species. Phylogenetic analyses using both coding sequences and complete chloroplast genomes revealed that M. falcata shares the closest phylogenetic relationship with M. hybrida and M. sativa. This study provided valuable information for further studies on the genetic relationship of the Medicago genus. Full article
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26 pages, 11108 KiB  
Article
Warming in the Maternal Environment Alters Seed Performance and Genetic Diversity of Stylosanthes capitata, a Tropical Legume Forage
by Priscila Marlys Sá Rivas, Fernando Bonifácio-Anacleto, Ivan Schuster, Carlos Alberto Martinez and Ana Lilia Alzate-Marin
Genes 2025, 16(8), 913; https://doi.org/10.3390/genes16080913 (registering DOI) - 30 Jul 2025
Viewed by 348
Abstract
Background/Objectives: Global warming and rising CO2 concentrations pose significant challenges to plant systems. Amid these pressures, this study contributes to understanding how tropical species respond by simultaneously evaluating reproductive and genetic traits. It specifically investigates the effects of maternal exposure to [...] Read more.
Background/Objectives: Global warming and rising CO2 concentrations pose significant challenges to plant systems. Amid these pressures, this study contributes to understanding how tropical species respond by simultaneously evaluating reproductive and genetic traits. It specifically investigates the effects of maternal exposure to warming and elevated CO2 on progeny physiology, genetic diversity, and population structure in Stylosanthes capitata, a resilient forage legume native to Brazil. Methods: Maternal plants were cultivated under controlled treatments, including ambient conditions (control), elevated CO2 at 600 ppm (eCO2), elevated temperature at +2 °C (eTE), and their combined exposure (eTEeCO2), within a Trop-T-FACE field facility (Temperature Free-Air Controlled Enhancement and Free-Air Carbon Dioxide Enrichment). Seed traits (seeds per inflorescence, hundred-seed mass, abortion, non-viable seeds, coat color, germination at 32, 40, 71 weeks) and abnormal seedling rates were quantified. Genetic diversity metrics included the average (A) and effective (Ae) number of alleles, observed (Ho) and expected (He) heterozygosity, and inbreeding coefficient (Fis). Population structure was assessed using Principal Coordinates Analysis (PCoA), Analysis of Molecular Variance (AMOVA), number of migrants per generation (Nm), and genetic differentiation index (Fst). Two- and three-way Analysis of Variance (ANOVA) were used to evaluate factor effects. Results: Compared to control conditions, warming increased seeds per inflorescence (+46%), reduced abortion (−42.9%), non-viable seeds (−57%), and altered coat color. The germination speed index (GSI +23.5%) and germination rate (Gr +11%) improved with warming; combined treatments decreased germination time (GT −9.6%). Storage preserved germination traits, with warming enhancing performance over time and reducing abnormal seedlings (−54.5%). Conversely, elevated CO2 shortened GSI in late stages, impairing germination efficiency. Warming reduced Ae (−35%), He (−20%), and raised Fis (maternal 0.50, progeny 0.58), consistent with the species’ mixed mating system; A and Ho were unaffected. Allele frequency shifts suggested selective pressure under eTE. Warming induced slight structure in PCoA, and AMOVA detected 1% (maternal) and 9% (progeny) variation. Fst = 0.06 and Nm = 3.8 imply environmental influence without isolation. Conclusions: Warming significantly shapes seed quality, reproductive success, and genetic diversity in S. capitata. Improved reproduction and germination suggest adaptive advantages, but higher inbreeding and reduced diversity may constrain long-term resilience. The findings underscore the need for genetic monitoring and broader genetic bases in cultivars confronting environmental stressors. Full article
(This article belongs to the Special Issue Genetics and Breeding of Forage)
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19 pages, 2388 KiB  
Article
Impact of Grassland Management System Intensity on Composition of Functional Groups and Soil Chemical Properties in Semi-Natural Grasslands
by Urška Lisec, Maja Prevolnik Povše, Miran Podvršnik and Branko Kramberger
Plants 2025, 14(15), 2274; https://doi.org/10.3390/plants14152274 - 24 Jul 2025
Viewed by 294
Abstract
Semi-natural grasslands are some of the most species-rich habitats in Europe and provide important ecosystem services such as biodiversity conservation, carbon sequestration and soil fertility maintenance. This study investigates how different intensities of grassland management affect the composition of functional groups and soil [...] Read more.
Semi-natural grasslands are some of the most species-rich habitats in Europe and provide important ecosystem services such as biodiversity conservation, carbon sequestration and soil fertility maintenance. This study investigates how different intensities of grassland management affect the composition of functional groups and soil chemical properties. Five grassland management systems were analyzed: Cut3—three cuts per year; LGI—low grazing intensity; CG—combined cutting and grazing; Cut4—four cuts per year; and HGI—high grazing intensity. The functional groups assessed were grasses, legumes and forbs, while soil samples from three depths (0–10, 10–20 and 20–30 cm) were analyzed for their chemical properties (soil organic carbon—SOC; soil total nitrogen—STN; inorganic soil carbon—SIC; soil organic matter—SOM; potassium oxide—K2O; phosphorus pentoxide—P2O5; C/N ratio; and pH) and physical properties (volumetric soil water content—VWC; bulk density—BD; and porosity—POR). The results showed that less intensive systems had a higher proportion of legumes, while species diversity, as measured via the Shannon index, was the highest in the Cut4 system. The CG system tended to have the highest SOC and STN at a 0–10 cm depth, with a similar trend observed for SOCstock at a 0–30 cm depth. The Cut4, HGI and CG systems also had an increased STNstock. Both grazing systems had the highest P2O5 content. A tendency towards a higher BD was observed in the top 10 cm of soil in the more intensive systems. Choosing a management strategy that is tailored to local climate and site conditions is crucial for maintaining grassland stability, enhancing carbon sequestration and promoting long-term sustainability in the context of climate change. Full article
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19 pages, 2238 KiB  
Article
Productivity, Biodiversity and Forage Value of Meadow Sward Depending on Management Intensity and Silicon Application
by Barbara Borawska-Jarmułowicz and Grażyna Mastalerczuk
Sustainability 2025, 17(15), 6717; https://doi.org/10.3390/su17156717 - 24 Jul 2025
Viewed by 217
Abstract
The efficiency and quality of meadows is affected by, among others, the botanical composition of the sward and the frequency of cutting. The research was conducted in 2023–2024 on the experiment established in 2014 on arable land, where 3-species mixtures of grasses and [...] Read more.
The efficiency and quality of meadows is affected by, among others, the botanical composition of the sward and the frequency of cutting. The research was conducted in 2023–2024 on the experiment established in 2014 on arable land, where 3-species mixtures of grasses and legumes were sown. During the next three years, the sward was fertilized and cut 3-times per year, and then, for five years, was mown twice a year, without fertilization. On the sward formed at that time, in 2023, an experiment was established to evaluate how management intensity (2- or 3-cuts and rate of fertilizer) and silicon application (Si or 0Si) affect botanical composition, yield, and nutrient content in perennial meadow swards under variable precipitation over two years. Species richness rose in the sward in the second year, especially under 3-cut management (from 15 to 21 species). The share of species sown earlier in the mixtures Dactylis glomerata, Festulolium braunii, and Medicago x varia was very high at both management intensities (66–87% DM). Yield and the content of crude protein and nutrients were higher in the 3-cut system in the second and third regrowths. Silicon supplementation increased plant diversity and yield resilience during drought, with more intensive management supporting sustainable forage production. Moreover, the sward contained more nutrients with 3-cuttings in the second and third regrowths. These findings indicate that intensive meadow management and silicon application enhance productivity, forage value, and biodiversity, providing valuable insights for sustainable meadow management strategies. Full article
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17 pages, 3355 KiB  
Article
Legume–Non-Legume Cover Crop Mixtures Enhance Soil Nutrient Availability and Physical Properties: A Meta-Analysis Across Chinese Agroecosystems
by Jiayu Ma, Baozhong Yin, Tian Gao, Kaixiao He, Xinqin Huang, Tiantong Jiang and Wenchao Zhen
Agronomy 2025, 15(8), 1756; https://doi.org/10.3390/agronomy15081756 - 22 Jul 2025
Viewed by 410
Abstract
Cover cropping has emerged as a pivotal sustainable agronomic practice aimed at enhancing soil health and sustaining crop productivity. To quantify its effects across diverse agroecosystems, we conducted a meta-analysis of 1877 paired observations from 114 studies (1980–2025) comparing cover cropping with bare [...] Read more.
Cover cropping has emerged as a pivotal sustainable agronomic practice aimed at enhancing soil health and sustaining crop productivity. To quantify its effects across diverse agroecosystems, we conducted a meta-analysis of 1877 paired observations from 114 studies (1980–2025) comparing cover cropping with bare fallow during fallow periods in major cereal systems across China. Cover cropping significantly reduced soil bulk density by 6.1% and increased key soil nutrients including total nitrogen (+13.1%), total phosphorus (+15.6%), hydrolysable nitrogen (+9.3%), available phosphorus (+11.1%), available potassium (+12.4%), soil organic matter (+11.7%), and microbial biomass carbon (+41.1%). Leguminous cover crops outperformed non-legumes in enhancing nitrogen availability, reflecting biological nitrogen fixation. Mixed-species cover crop mixtures showed superior benefits over monocultures, likely due to complementary effects on nutrient cycling and soil structure. Soil texture and initial soil organic carbon significantly moderated these outcomes. Furthermore, although overall soil pH remained stable, cover cropping exhibited a clear buffering effect, tending to regulate soil pH toward neutrality. Meta-regression analyses revealed a diminishing positive effect on total nitrogen (TN), available potassium (AK), and microbial biomass carbon (MBC) with an extended duration of cover cropping, suggesting potential saturation effects. These results underscore the context-dependent efficacy of cover cropping as a strategy for soil quality enhancement. Optimizing cover crop implementation should integrate the consideration of inherent soil characteristics, baseline fertility, and species composition to maximize agroecosystem resilience and sustainability. Full article
(This article belongs to the Section Innovative Cropping Systems)
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21 pages, 1723 KiB  
Article
Variation in Leaf Morphology and Agronomic Attributes of a Naturalized Population of Medicago polymorpha L. (Burr Medic) from New South Wales, Australia, and Relationships with Climate and Soil Characteristics
by David L. Lloyd, John P. Thompson, Rick R. Young, Suzanne P. Boschma and Mark O’Neill
Agronomy 2025, 15(7), 1737; https://doi.org/10.3390/agronomy15071737 - 18 Jul 2025
Viewed by 264
Abstract
As one component of a study to improve Medicago spp. germplasm in eastern Australia, fifteen phenotypic and agronomic attributes were recorded for 4715 plants grown from the seed of 90 accessions of the widely naturalized pasture legume Medicago polymorpha from 90 sites in [...] Read more.
As one component of a study to improve Medicago spp. germplasm in eastern Australia, fifteen phenotypic and agronomic attributes were recorded for 4715 plants grown from the seed of 90 accessions of the widely naturalized pasture legume Medicago polymorpha from 90 sites in eight regions of inland New South Wales. The species expressed wide polymorphism. However, many leaflet attributes were associated with specific climate and soil characteristics, which varied from east to west across the collection zone. Discriminant analysis showed that accessions from the four most northern (summer dominant rainfall) and western (arid–semiarid) regions (Group A) differed from accessions from the most southern, temperate (winter dominant rainfall) and eastern (higher rainfall) regions (Group B). Group A flowered earlier and had shorter pod spines. Group B had lower plant vigor. Regions from which Group A accessions were collected had higher soil pH, lower winter rainfall, and higher minimum winter temperature than Group B regions. The diversity in the population, particularly the difference in flowering times among accessions collected from drier, warmer regions and those from more mesic, cooler regions, and the wide variation in flowering time measured among plants grown from accessions within all collection regions, is likely to ensure the long-term persistence of M. polymorpha in a changing climate. Elite lines were subsequently identified and lodged in National and International Genebanks for future research. Full article
(This article belongs to the Section Grassland and Pasture Science)
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24 pages, 1334 KiB  
Article
Evaluation of the Global White Lupin Collection Reveals Significant Associations Between Homologous FLOWERING LOCUS T Indels and Flowering Time, Providing Validated Markers for Tracking Spring Ecotypes Within a Large Gene Pool
by Wojciech Bielski, Anna Surma, Michał Książkiewicz and Sandra Rychel-Bielska
Int. J. Mol. Sci. 2025, 26(14), 6858; https://doi.org/10.3390/ijms26146858 - 17 Jul 2025
Viewed by 229
Abstract
FLOWERING LOCUS T (FT) is a key integrator of flowering pathways. White lupin, a grain legume, encodes four FT homologs: LalbFTa1, LalbFTa2, LalbFTc1, and LalbFTc2. Widespread distribution of white lupin implies diverse phenological adaptations to contrasting ecosystems. [...] Read more.
FLOWERING LOCUS T (FT) is a key integrator of flowering pathways. White lupin, a grain legume, encodes four FT homologs: LalbFTa1, LalbFTa2, LalbFTc1, and LalbFTc2. Widespread distribution of white lupin implies diverse phenological adaptations to contrasting ecosystems. Recent studies highlighted associations between FT indels and flowering regulation. Therefore, we surveyed the global white lupin collection for the presence of such indels and potential links to phenology. A panel of 626 white lupin genotypes, representing several European and African agro-climates, was phenotyped under a long-day photoperiod in a two-year study, showing up to 80 days of flowering time difference between early landraces from Eastern Mediterranean and late accessions from France, Madeira, the Canaries, Greece, Italy, and the Azores. As many as seventeen indel variants were identified for LalbFTc1, twelve for LalbFTa2, nine for LalbFTa1, and four for LalbFTc2, yielding roughly three hundred allelic combinations. Significant correlations with phenology were confirmed for one LalbFTa1 indel and twelve LalbFTc1 indels. A large, highly correlated LalbFTc1 indel was revealed to be conserved among all domesticated Old World lupins, carrying all FTc1-promoter candidate binding sites of the same major floral repressor, AGAMOUS-LIKE 15. A small LalbFTa1 indel, providing additional contribution to earliness, showed homology between white and yellow lupins. LalbFTc1 indel-based PCR markers revealed high discriminatory power towards early (PR_42a and PR_71b) or late (PR_58c, PR_36b, PR_80, and PR_60b) flowering. Full article
(This article belongs to the Special Issue Developing Methods and Molecular Basis in Plant Biotechnology)
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25 pages, 3057 KiB  
Article
Phylogenetic Diversity and Symbiotic Effectiveness of Bradyrhizobium Strains Nodulating Glycine max in Côte d’Ivoire
by Marie Ange Akaffou, Romain Kouakou Fossou, Anicet Ediman Théodore Ebou, Zaka Ghislaine Claude Kouadjo-Zézé, Chiguié Estelle Raïssa-Emma Amon, Clémence Chaintreuil, Saliou Fall and Adolphe Zézé
Agronomy 2025, 15(7), 1720; https://doi.org/10.3390/agronomy15071720 - 17 Jul 2025
Viewed by 581
Abstract
Soybean (Glycine max) is a protein-rich legume crop that plays an important role in achieving food security. The aim of this study was to isolate soybean-nodulating rhizobia from Côte d’Ivoire soils and evaluate their potential as efficient strains in order to [...] Read more.
Soybean (Glycine max) is a protein-rich legume crop that plays an important role in achieving food security. The aim of this study was to isolate soybean-nodulating rhizobia from Côte d’Ivoire soils and evaluate their potential as efficient strains in order to develop local bioinoculants. For this objective, 38 composite soil samples were collected from Côte d’Ivoire’s five major climatic zones. These soils were used as substrate to trap the nodulating rhizobia using the promiscuous soybean variety R2-231. A total of 110 bacterial strains were isolated and subsequently identified. The analysis of ITS (rDNA16S-23S), glnII and recA sequences revealed a relatively low genetic diversity of these native rhizobia. Moreover, the ITS phylogeny showed that these were scattered into two Bradyrhizobium clades dominated by the B. elkanii supergroup, with ca. 75% of all isolates. Concatenated glnII-recA sequence phylogeny confirmed that the isolates belong in the majority to ‘B. brasilense’, together with B. vignae and some putative genospecies of Bradyrhizobium that needs further elucidation. The core gene phylogeny was found to be incongruent with nodC and nifH phylogenies, probably due to lateral gene transfer influence on the symbiotic genes. The diversity and composition of the Bradyrhizobium species varied significantly among different sampling sites, and the key explanatory variables identified were carbon (C), magnesium (Mg), nitrogen (N), pH, and annual precipitation. Based on both shoot biomass and leaf relative chlorophyll content, three isolates consistently showed a higher symbiotic effectiveness than the exotic inoculant strain Bradyrhizobium IRAT-FA3, demonstrating their potential to serve as indigenous elite strains as bioinoculants. Full article
(This article belongs to the Section Agricultural Biosystem and Biological Engineering)
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8 pages, 192 KiB  
Perspective
Diversification of Rice-Based Cropping Systems with Vegetables and Legumes in Asia and Africa
by Ramasamy Srinivasan
Crops 2025, 5(4), 43; https://doi.org/10.3390/crops5040043 - 14 Jul 2025
Viewed by 768
Abstract
Rice is one of the most important staple foods worldwide. Asia, particularly South and Southeast Asia, is a major rice producer, and rice production is also gradually increasing in Africa. However, rice cultivation poses economic and environmental challenges, which are exacerbated by climate [...] Read more.
Rice is one of the most important staple foods worldwide. Asia, particularly South and Southeast Asia, is a major rice producer, and rice production is also gradually increasing in Africa. However, rice cultivation poses economic and environmental challenges, which are exacerbated by climate change. Hence, diversification of rice-based production systems is highly imperative to improve soil health and thus sustain productivity while also enhancing income opportunities. Vegetables and pulses are crucial components for diversifying rice-based production systems as they have the potential to increase income and improve soil health. The World Vegetable Center has introduced mungbeans and vegetable soybeans to diversify the cereal-based production systems in Asia. About 27–93% of the mungbean area in India, Pakistan, Bangladesh, and Myanmar is planted with varieties containing improved germplasm developed by WorldVeg in collaboration with national agricultural research systems. Additionally, the introduction of vegetables and legumes is highly remunerative and improves dietary diversity, leading to better nutrition. For instance, the productivity of vegetable crops increased by 200–350% when they were combined with improved production practices. Such diversification also holds great promise for improving income and nutrition in Africa. It also enhances the resilience of farming systems, particularly in a changing climate. Hence, governments should prioritize system diversification to enhance the income and livelihood opportunities for smallholders in Asia and Africa. Full article
15 pages, 1680 KiB  
Article
Thermal Tolerance and Host Plant Suitability of Bemisia tabaci MED (Gennadius) in Brazilian Legume Crops
by Daniel de Lima Alvarez, Rafael Hayashida, Daniel Mariano Santos, Felipe Barreto da Silva, Cristiane Müller, Renate Krause-Sakate, William Wyatt Hoback and Regiane Cristina de Oliveira
Agronomy 2025, 15(7), 1622; https://doi.org/10.3390/agronomy15071622 - 3 Jul 2025
Viewed by 407
Abstract
The whitefly, Bemisia tabaci, is a complex of cryptic species that is a significant pest of different legume hosts that inhabits various regions worldwide with diverse climates and characteristics. Its adaptability is often facilitated by the insect’s microbiome, which can contribute to both [...] Read more.
The whitefly, Bemisia tabaci, is a complex of cryptic species that is a significant pest of different legume hosts that inhabits various regions worldwide with diverse climates and characteristics. Its adaptability is often facilitated by the insect’s microbiome, which can contribute to both the metabolism of host plant secondary compounds and insecticide resistance. The most relevant biotypes in Brazil are Middle East-Asia Minor 1 (MEAM1) and Mediterranean (MED), because of their ability to damage different hosts. Although MEAM1 is the prevalent species in Brazil, MED has great potential to spread, and there is little current knowledge about the biology of this biotype in the country. Therefore, the objective of this study was to evaluate the development and viability of MED on two legumes, soybean and common bean, alongside cotton, bell pepper, and tomato, at temperatures of 20 °C, 23 °C, 26 °C, 29 °C, 32 °C, and 35 °C and characterize the composition of its endosymbionts. Temperatures between 23 °C and 32 °C were the most suitable for B. tabaci MED development and viability across all tested host plants, whereas 35 °C proved harmful for insects reared on legumes. We observed a temperature threshold (°C) and thermal constant (degree-days) that varied according to the host plant, ranging from 9.81 °C and 384.62 for soybean to 11.17 °C and 333.33 for bell pepper, respectively. The main endosymbionts were in a ratio of 80% Hamiltonella and 20% Cardinium. These results allow the future mapping of risk for the MED biotype on different host plants in Brazil and elsewhere in South America. Full article
(This article belongs to the Special Issue Recent Advances in Legume Crop Protection)
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33 pages, 498 KiB  
Review
Functional Genomics: From Soybean to Legume
by Can Zhou, Haiyan Wang, Xiaobin Zhu, Yuqiu Li, Bo Zhang, Million Tadege, Shihao Wu, Zhaoming Qi and Zhengjun Xia
Int. J. Mol. Sci. 2025, 26(13), 6323; https://doi.org/10.3390/ijms26136323 - 30 Jun 2025
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Abstract
The Fabaceae family, the third-largest among flowering plants, is nutritionally vital, providing rich sources of protein, dietary fiber, vitamins, and minerals. Leguminous plants, such as soybeans, peas, and chickpeas, typically contain two to three times more protein than cereals like wheat and rice, [...] Read more.
The Fabaceae family, the third-largest among flowering plants, is nutritionally vital, providing rich sources of protein, dietary fiber, vitamins, and minerals. Leguminous plants, such as soybeans, peas, and chickpeas, typically contain two to three times more protein than cereals like wheat and rice, with low fat content (primarily unsaturated fats) and no cholesterol, making them essential for cardiovascular health and blood sugar management. Since the release of the soybean genome in 2010, genomic research in Fabaceae has advanced dramatically. High-quality reference genomes have been assembled for key species, including soybeans (Glycine max), common beans (Phaseolus vulgaris), chickpeas (Cicer arietinum), and model legumes like Medicago truncatula and Lotus japonicus, leveraging long-read sequencing, single-cell technologies, and improved assembly algorithms. These advancements have enabled telomere-to-telomere (T2T) assemblies, pan-genome constructions, and the identification of structural variants (SVs) and presence/absence variations (PAVs), enriching our understanding of genetic diversity and domestication history. Functional genomic tools, such as CRISPR-Cas9 gene editing, mutagenesis, and high-throughput omics (transcriptomics, metabolomics), have elucidated regulatory networks controlling critical traits like photoperiod sensitivity (e.g., E1 and Tof16 genes in soybeans), seed development (GmSWEET39 for oil/protein transport), nitrogen fixation efficiency, and stress resilience (e.g., Rpp3 for rust resistance). Genome-wide association studies (GWAS) and comparative genomics have further linked genetic variants to agronomic traits, such as pod size in peanuts (PSW1) and flowering time in common beans (COL2). This review synthesizes recent breakthroughs in legume genomics, highlighting the integration of multi-omic approaches to accelerate gene cloning and functional confirmation of the genes cloned. Full article
(This article belongs to the Special Issue Genetics and Novel Techniques for Soybean Pivotal Characters)
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