Search Results (1,565)

Coastal pond-to-mangrove restoration has become a prominent Nature-based Solution, yet its short-term ecological effects on waterbird communities remain unclear. We assessed taxonomic, functional, and compositional responses of waterbirds to large-scale restoration in Bamen Bay, Hainan Island, using BACI-style comparisons between restored and unrestored aquaculture ponds in 2021 and 2023. Restored areas exhibited higher taxonomic α diversity and functional richness (p < 0.001), coinciding with rapid habitat diversification following hydrological reconnection. Species richness (p < 0.001), Shannon diversity (p < 0.01), and functional richness (p < 0.01) were consistently higher in restored areas than in aquaculture ponds. In contrast, β diversity patterns diverged between habitats: restored areas remained relatively stable, whereas aquaculture ponds showed greater between-year compositional change (p < 0.05). Guild-specific responses revealed contrasting patterns: herons showed higher diversity in restored habitats (p < 0.05), whereas shorebirds exhibited no significant changes (p > 0.05), consistent with their dependence on open mudflats that were only partially retained. Although no significant declines were detected, functional richness tended to be lower in 2023 (p > 0.05), and ongoing mudflat loss suggests potential long-term risks for mudflat specialists, warranting extended monitoring. Taken together, our findings suggest that effective pond-to-mangrove restoration in Bamen Bay should balance mangrove expansion with the retention of tidal flats and managed shallow-water habitats to support diverse waterbird assemblages. Full article

Peatlands play a critical role in global and regional climate regulation by functioning as long-term carbon sinks, regulating hydrology, and modulating land–atmosphere energy exchange. Intact peat ecosystems store large amounts of organic carbon and stabilize local climate through high water retention and evapotranspiration, whereas peatland degradation disrupts these functions and can transform peatlands into significant sources of greenhouse gas emissions and climate extremes such as drought and fire. Indonesia contains approximately 13.6–40.5 Gt of carbon, around 40% of which is stored on the island of Sumatra. However, tropical peatlands in this region are highly vulnerable to climate anomalies and land-use change. This study investigates the impacts of major climate anomalies—specifically El Niño and positive Indian Ocean Dipole (pIOD) events in 1997/1998, 2015/2016, and 2019—on peatland cover change across South Sumatra, Jambi, Riau, and the Riau Islands. Landsat 5 Thematic Mapper and Landsat 8 Operational Land Imager/Thermal Infrared Sensor imagery were analyzed using a Random Forest machine learning classification approach. Climate anomaly periods were identified using El Niño-Southern Oscillation (ENSO) and IOD indices from the National Oceanic and Atmospheric Administration. To enhance classification accuracy and detect vegetation and hydrological stress, spectral indices including the Normalized Difference Vegetation Index (NDVI), Modified Soil Adjusted Vegetation Index (MSAVI), Normalized Difference Water Index (NDWI), and Normalized Difference Drought Index (NDDI) were integrated. The results show classification accuracies of 89–92%, with kappa values of 0.85–0.90. The 2015/2016 El Niño caused the most severe peatland degradation (>51%), followed by the 1997/1998 El Niño (23–38%), while impacts from the 2019 pIOD were comparatively limited. These findings emphasize the importance of peatlands in climate regulation and highlight the need for climate-informed monitoring and management strategies to mitigate peatland degradation and associated climate risks. Full article

Thymic carcinoma (TC) is a rare and aggressive malignancy with poor prognosis, and its genomic landscape remains incompletely defined. Identifying the somatic alterations that shape TC biology is essential for improving diagnostic precision, developing targeted therapies, and informing early detection strategies. We performed a retrospective genomic analysis of 141 TC tumor specimens from 134 patients using de-identified data from the American Association for Cancer Research (AACR) Project GENIE^® database. Somatic mutations and copy number alterations (CNAs) were characterized, and statistical analyses were conducted to evaluate associations with patient demographics (sex, race) and tumor site (primary vs. metastatic). The cohort was predominantly male (56.7%) and White (56.7%). The most frequently altered genes were TP53 (27.7%), CYLD (17.6%), and CDKN2A (12.1%). Recurrent homozygous deletions at chromosome 9p21.3 involving CDKN2A and CDKN2B were common. Sex-stratified analysis revealed several significant male-specific alterations. Although the Pacific Islander subgroup was small (n = 2), preliminary analysis suggested enrichment of alterations in key cancer-associated genes, including TP53, BRCA1, and STAT5B, underscoring the need for diverse representation in TC genomics. Notably, MTOR mutations were significantly enriched in a subset of local recurrences and lymph node metastases (n = 3; q = 0.013), suggesting a potential role in disease progression. This large-scale genomic analysis reinforces the central involvement of TP53, cell-cycle control, and chromatin-modifying pathways in TC. The identification of sex-associated and race-associated mutational patterns, together with the enrichment of MTOR alterations in recurrent and metastatic disease, highlights biologically plausible mechanisms of progression and potential therapeutic vulnerabilities. These findings support the value of comprehensive genomic profiling in TC and emphasize the need for prospective, multi-omic studies to validate these observations and guide the development of more personalized treatment strategies. Full article

Bifidobacterium animalis subsp. lactis is a widely used probiotic, yet its efficacy is highly strain-specific, and growing antibiotic resistance necessitates rigorous safety evaluations. We used whole-genome sequencing and in vitro assays to characterize the safety and probiotic traits of infant feces-sourced strain BD1, which shows preliminary mood-modulating and anti-inflammatory potential. The BD1 genome showed a favorable safety profile. VFDB analysis identified 139 low-similarity homologs, with no major toxins detected. Only four chromosomally encoded antibiotic resistance genes were found; phenotypic testing confirmed resistance solely to tetracycline and mupirocin. Although the tetracycline resistance gene tet(W) was identified in genomic island GI01, the absence of associated mobile genetic elements results in a negligible risk of its mobilization. Functional annotation highlighted a dominant metabolic capacity for carbohydrate and amino acid metabolism. BD1 is rich in CAZymes, enabling superior utilization of diverse substrates (starch, sucrose, galactose). Enrichment in lipid metabolism pathways (glycerolipid, sphingolipid) further suggests potential for enhancing fermented product flavor. In vitro assessment demonstrated moderate gastrointestinal tolerance and strong bile salt tolerance. Surface properties showed pronounced cell surface hydrophobicity and confirmed biofilm-forming potential. In conclusion, BD1 exhibits robust safety, metabolic versatility, and strong probiotic characteristics, supporting its development as a functional probiotic strain. Full article

Recycled wastewater is vital for the circular economy, especially on water-scarce islands. This study explored the presence of Carbapenem-Resistant Enterobacterales and other emerging pathogens in irrigation water on four Canarian Islands, applying a One Health perspective. Using membrane filtration and MALDI-TOF mass spectrometry, 69 bacterial isolates were identified. The findings revealed that 78% were Gram-negative bacilli like Pseudomonas aeruginosa, Acinetobacter spp., Enterobacteriaceae, etc., while 22% were Gram-positive bacteria, including Enterococcus spp. The main mechanisms of carbapenem resistance in Pseudomonas spp. and Acinetobacter spp. were oxacillinases, followed by metallo-β-lactamases (MBL). In Enterobacteriaceae, characterization of carbapenemase types was less frequent, with oxacillinase 48 (OXA-48) being the most prevalent. The detection of multidrug-resistant organisms in recycled wastewater highlights an urgent need for routine microbiological monitoring in water management to protect both public health and agricultural sustainability. Full article

Islands provide valuable opportunities to study how isolation affects phenotypic variation. Even though orchid bees are highly mobile, their movement can still be restricted by marine barriers. In this study, we assessed whether insular isolation impacts wing shape in the orchid bee Euglossa mixta across the Coiba archipelago and a nearby mainland site in Western Panama. Our study analyzed 271 individuals using geometric morphometrics, focusing on forewing venation landmarks, and evaluated the variation using multivariate analyses of shape variation and quantifying the shape of Mahalanobis distances. Additionally, we conducted a Mantel test to explore the relationship between geographic distance and morphological divergence. Our findings reveal that wing shape variation in E. mixta is largely conserved but shows fine-scale structuring consistent with spatial patterns expected in insular systems. These results suggest that even highly mobile pollinators may experience enough isolation for subtle phenotypic shifts to occur, highlighting the sensitivity of geometric morphometrics for detecting early stages of morphological differentiation. Full article

Bovine leukemia virus (BLV) causes enzootic bovine leukosis (EBL), yet its pathogenic mechanisms remain largely unclear. In particular, the role of BLV genomic integration sites (IS(s)) in BLV-induced leukemogenesis has not been fully elucidated. Here, we identified a total of 235 ISs from 99 BLV-infected cattle with lymphoma, of which 4.3% and 46.8% were located within exon and intron, respectively, while no preferential integration into CpG islands or repetitive regions was observed. All identified ISs were distinct, and no identical sites were detected among the samples. We identified 246 genes related with these ISs and protein–protein interaction analysis of these genes demonstrated one “IS-Clustered genes” composed of 85 among 246 genes. This “IS-Clustered genes” contains 12 cancer genes (14.1%) with high significantly proportion. Notably, with 55 among 99 cattle tested (55.6%) harboring ISs within this cluster, suggesting its crucial involvement in BLV-induced pathogenesis. Furthermore, integrated analysis of known lymphoma- and IS-related genes and the 85 “IS-Clustered genes” showed that key genes formed a shared cluster, indicating a potential “common EBL-associated cluster.” These findings provide important insights into the role of BLV integration in EBL development and may contribute to elucidating its molecular mechanisms underlying onset of EBL. In addition, these findings may also aid in the development of therapeutic strategies and facilitate early diagnosis. Full article

In this study, we investigated the presence and diversity of FLA in 62 environmental samples collected across Tenerife, Canary Islands, Spain including agricultural and playground soils, and on double treated water from public refrigerated fountains. Amoebae were isolated by culturing processed samples onto 2% Non-Nutrient Agar plates (NNA) which were checked daily for further processing up to molecular characterization. In this case, two approaches for molecular identification were assessed: direct multiplex qPCR targeting four potentially pathogenic FLA (Acanthamoeba spp., Vermamoeba vermiformis, Naegleria fowleri, and Balamuthia mandrillaris) DNA, and culture-based isolation followed by standard PCR and sequence analysis. Regarding qPCR results, 72.6% (45/62) of the samples were positive for at least one FLA, with V. vermiformis (37/62) and Acanthamoeba spp. (34/62) being the most frequent. Moreover, B. mandrillaris was detected for the first time in the Canary Islands in 6 out of 62 samples. Results from standard PCR from cultured isolates confirmed the presence of Acanthamoeba (mainly genotype T4) and Vermamoeba and also allowed the identification of Vahlkampfia and Vannella genera, as well as the genus Rhogostoma—its first report in the Canary Islands. Thermotolerance and osmotolerance assays were performed on Acanthamoeba spp. and, innovatively, on V. vermiformis isolates. Both were capable of surviving at 37 °C and during incubation with 0.5 M mannitol, suggesting potential pathogenicity. However, growth was significantly impaired under harsher conditions (42 °C and 1 M mannitol). These findings underscore the widespread occurrence of FLA in public and agricultural environments in Tenerife and highlight their potential risk to public health. Their ability to act as carriers of pathogenic bacteria/viruses further reinforces the need for routine surveillance and preventive measures in the environment. Full article

Benthic marine diatoms are speciose but vastly underexplored eukaryotic microbes. Diatoms are identified by their intricately ornamented silica cell walls known as frustules, following removal of all organic matter with acid or strong oxidants. When living samples of diatom communities are examined, it is impossible to detect all the species present, as rare ones are easily obscured among the other materials present, and taxonomic identification of living diatoms can be uncertain or impossible, even with isolated cells. These features of diatom taxonomy have important consequences for biogeography, which we illustrate and discuss using new observations from two species. Despite being the mainstay for diatom descriptions, species described by light microscopy (LM) alone may conflate two species or (as in the case presented) lead to spurious new species; both need ultrastructural study to ascertain taxonomic and geographical boundaries. The species studied with scanning electron microscopy (SEM) over the last 45 years by Stephens & Gibson, Pennesi et al., and Lobban under the name of Mastogloia hustedtii is shown to be synonymous with M. grunovii. The former became known in the SEM era to bear both pseudoconopea (longitudinal flaps parallel to the sternum, invisible in LM) and silica plaques on the inner margins of the partecta (chambers on the valvocopulae), with the latter supposedly bearing neither, but there is a single, pantropical/Mediterranean species encompassed in the original description of M. grunovii. A new ultrastructural feature for the genus is reported from this species: marginal chambers formed by laminae over the mantle areolae and the first 2–3 areolae on the valve face. The second species studied, M. meisteri, had been reported a few times from one region based on very rare frustules, which do not meet the first criterion for biogeography: where did they live? Although we, too, did not observe living cells, the number of specimens present is evidence for a living population epiphytic on a Virgin Islands coral reef. The ultrastructure of this species is also shown for the first time. Because absence of evidence is overwhelming in microbial biogeography, the best we can say is that this species is potentially a regional endemic. Full article

Background: Women living in riverine communities are affected by factors such as geographical and cultural distance that hinder access to and use of health services. In this context, access to the Pap smear is crucial for the early detection of cellular changes that may progress to cervical cancer, which underlines the importance of understanding riverine women’s subjective perceptions of this exam. Objectives: To analyze the perceptions of riverine women regarding cervical cancer screening through the lens of health literacy. Methods: Descriptive qualitative study conducted with 42 riverine women residents of the Brazilian Amazon who were registered at the Basic Health Unit on Cotijuba Island, Pará, Brazil. Data were collected through semi-structured individual interviews from January to May 2024 and analyzed using IRaMuTeQ software version 0.7 alpha 2. Results: Data were grouped into similar classes, yielding the following thematic axes: knowledge, feelings and perceptions about the Pap smear test; how health literacy and access to information affect self-care; access to health services. The study showed that limited participant knowledge about the Pap smear was reflected in low health literacy, which directly affected adherence to the exam. Conclusions: The study demonstrated that the riverine woman’s limited knowledge regarding the Pap smear was reflected in their poorly developed health literacy, which directly contributed to non-adherence to the exam. Full article

Background/Objectives: DNA methylation is a key epigenetic process that regulates gene expression and is often disrupted in colorectal cancer (CRC). Aberrant methylation of promoter CpG islands can silence tumor suppressor genes and drive tumorigenesis. A subset of CRCs exhibits the CpG Island Methylator Phenotype (CIMP), characterized by widespread hypermethylation and distinct clinical outcomes. Identifying genes whose expression is epigenetically regulated by methylation is important for prioritizing candidate biomarkers and therapeutic targets in CRC. Methods: We developed and compared a series of computational approaches to identify genes whose expression is regulated by DNA methylation in The Cancer Genome Atlas (TCGA) cohort of Colon Adenocarcinoma (COAD) patients. Samples were stratified according to their CpG Island Methylator Phenotype (CIMP) level to capture distinct epigenetic subgroups. The proposed framework integrates methylation and transcriptomic data to systematically detect methylation–expression associations indicative of epigenetic regulation. Results: The best-performing method identified gene sets strongly associated with promoter methylation–expression relationships and enriched for pathways relevant to colorectal cancer progression and patient stratification. To evaluate the robustness and transferability of the approach, it was further validated on independent datasets, including Stomach Adenocarcinoma (STAD), Glioblastoma Multiforme (GBM), and Mesothelioma (MESO), supporting its robustness and potential generalizability across multiple tumor types. Conclusions: Our study highlights the potential of computational pipelines to uncover epigenetically regulated genes in colorectal cancer. The identified candidate genes provide a hypothesis-generating foundation for refining molecular stratification and guiding future studies aimed at epigenetic biomarker discovery and therapeutic hypothesis development. Full article

Students with high ability (HA), due to their differential characteristics, need to receive a specific educational response for the adequate development of their potential. Thus, they must be detected and then identified, but many of these students (around 9.5%, based on prevalences of domain-specific definitions) remain unidentified, especially among girls. The low detection of highly able students raises the need to establish more objective and efficient criteria. Thus, the objective of this study is to analyze whether the use of objective tests in the procedure increases the number of male and female students detected with HA. To detect students with HA, the general intelligence assessment instrument Matrices-TAI has been applied to students from the first to the third year of Compulsory Secondary Education in different educational centers in the Community of the Canary Islands (N = 1216). The results show that in official data, only 1.17% of HA students (0.89% of girls and 1.44% of boys) have been identified, while 9.21% (8.10% of girls and 10.35% of boys) have a higher intelligence in this convenience sample, coinciding with the percentages of talent found in the literature. In conclusion, in our sample, universal screening with a rigorous intelligence test identified a substantially larger proportion of students, including girls, than current nomination-based procedures appear to capture in administrative statistics, suggesting that such screening may reduce gender disparities in identification. Full article

The increasing integration of inverter-based resources in smart grid systems has deepened the necessity to understand the difference between grid-following and grid-forming inverters’ operational performance, particularly under abnormal conditions such as unintentional islanding events. This work provides a comparative assessment, showing that while grid-following inverters perform well under strong grids, their stability degrades under weak grids due to their dependence on the grid reference voltage. On the other hand, grid-forming inverters improve the system stability under weak grids, as they operate as an independent voltage source. However, the widespread misconception in academia and industry that grid-forming inverters are always good and grid-following inverters are generally bad is challenged by this work’s results. Despite the stability advantages of grid-forming inverters, they significantly increase the size of non-detected zones and extend the detection time of unintentional islanding events, with various cases failing to meet standards, while grid-following inverters offer quicker and more expectable responses. A Random Forest-based islanding detection scheme is proposed to address the protection difficulties allied with both inverter types. The findings prove that this model can reduce the size of the non-detected zone and the detection time, emphasizing the necessity of intelligent protection schemes in future microgrid applications and the significance of performance-based inverter selection. Full article

Free-living amoebae (FLA) are protozoa ubiquitous in nature, isolated from a variety of environments worldwide. In addition to their natural distribution, some species have been found to be pathogenic to humans. In the present study, FLA presence was evaluated and characterized at the molecular level from different water and soil samples in Fuerteventura Island, Canary Islands, Spain. A total of 31 samples were analyzed by culture and molecular assays (q-PCR and PCR). Moreover, the microbiological quality of the water samples was examined as required by current legislation and international standards. The obtained data revealed that the genus Acanthamoeba was the most prevalent genus of FLA in soil samples and the species Vermamoeba vermiformis was the most isolated in water samples collected from Fuerteventura by culture and molecular assays, q-PCR, and conventional PCR/Sanger sequencing. On the other hand, a microbiological analysis revealed heterogeneous contamination patterns. Escherichia coli was detected in several samples, with some exhibiting high counts while others showed no presence. Salmonella spp. appeared in multiple samples, particularly FTVW1, FTVW9, and FTVW13, whereas Shigella spp. was only found in one sample (FTVW1). Moreover, q-PCR detection offers advantages such as reduced detection time and cost. In addition, culture was proven to be more effective for confirming FLA viability and isolating a greater variety of FLA. Overall, the occurrence of potentially pathogenic free-living amoebae in habitats related to the human population, as reported in the present study, supports the relevance of FLA as a potential health threat to humans. Full article

Bluetongue (BT) is an arthropod-borne viral disease primarily affecting domestic and wild ruminants. In recent years, several BTV serotypes and genotypes have been detected in Israel almost annually, raising questions about their origin and routes of introduction. Some BTV serotypes closely related to those first identified in Israel, including BTV-3, BTV-8, and BTV-12, were subsequently reported in Europe after a delay of several years. In this study, we sequenced the complete genomes of one representative strain of all newly identified Israeli BTV genotypes/serotypes—BTV-1, -4, -5, -8, and -11—first detected between 2021 and 2023. Additionally, complete sequences of enzootic Israeli BTV (2015) and eleven BTV-3 strains (2019–2023), with two representative strains for every year of isolation, except 2021 (three strains), were analyzed using phylogenetic, BLAST, and pairwise identity approaches. Genetic analyses revealed that recently identified Israeli and European BTV strains share common African ancestors, with some genomic “incursions” from Mayotte Island or the Arabian Peninsula. These incursions appeared more frequently in Israeli than in European strains. Nevertheless, nucleotide sequence differences of at least 2–3% across all genes indicate several years of independent evolution. The observed divergence suggests that no direct transmission of BTV occurred between Israel and Europe during the past decade. Full article