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16 pages, 3142 KiB  
Review
Mechanisms of Resistance of Oryza sativa to Phytophagous Insects and Modulators Secreted by Nilaparvata lugens (Hemiptera, Delphacidae) When Feeding on Rice Plants
by Xiaohong Zheng, Weiling Wu, Yuting Huang, Kedong Xu and Xinxin Shangguan
Agronomy 2025, 15(8), 1891; https://doi.org/10.3390/agronomy15081891 - 6 Aug 2025
Abstract
The brown planthopper, Nilaparvata lugens (Stål, 1854), is the most devastating pest of rice (Oryza sativa L.). Although insecticides are used to control this pest, host plant resistance is a more effective and economic solution. Therefore, identification of N. lugens-resistant genes [...] Read more.
The brown planthopper, Nilaparvata lugens (Stål, 1854), is the most devastating pest of rice (Oryza sativa L.). Although insecticides are used to control this pest, host plant resistance is a more effective and economic solution. Therefore, identification of N. lugens-resistant genes and elucidation of their underlying resistance mechanisms are critical for developing elite rice cultivars with enhanced and durable resistance. Research has shown that in the long-term evolutionary arms race, rice has developed complex defense systems against N. lugens, while N. lugens has developed diverse and sophisticated strategies to overcome the plant’s defenses. This review emphasizes recent advances in the molecular interactions between rice and the N. lugens, particularly focusing on the resistance mechanisms of 17 cloned major N. lugens resistance genes, which have significantly improved our understanding of the molecular basis of rice–N. lugens interactions. We also highlight the roles of several N. lugens salivary components in activating or suppressing rice defense responses. These insights provide a foundation for developing sustainable and effective strategies to manage this devastating pest of rice. Full article
(This article belongs to the Special Issue New Insights into Pest and Disease Control in Rice)
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24 pages, 2655 KiB  
Article
Ribosomal RNA-Specific Antisense DNA and Double-Stranded DNA Trigger rRNA Biogenesis and Insecticidal Effects on the Insect Pest Coccus hesperidum
by Vol Oberemok, Nikita Gal’chinsky, Ilya Novikov, Alexander Sharmagiy, Ekaterina Yatskova, Ekaterina Laikova and Yuri Plugatar
Int. J. Mol. Sci. 2025, 26(15), 7530; https://doi.org/10.3390/ijms26157530 - 4 Aug 2025
Abstract
Contact unmodified antisense DNA biotechnology (CUADb), developed in 2008, employs short antisense DNA oligonucleotides (oligos) as a novel approach to insect pest control. These oligonucleotide-based insecticides target pest mature rRNAs and/or pre-rRNAs and have demonstrated high insecticidal efficacy, particularly against sap-feeding insect pests, [...] Read more.
Contact unmodified antisense DNA biotechnology (CUADb), developed in 2008, employs short antisense DNA oligonucleotides (oligos) as a novel approach to insect pest control. These oligonucleotide-based insecticides target pest mature rRNAs and/or pre-rRNAs and have demonstrated high insecticidal efficacy, particularly against sap-feeding insect pests, which are key vectors of plant DNA viruses and among the most economically damaging herbivorous insects. To further explore the potential of CUADb, this study evaluated the insecticidal efficacy of short 11-mer antisense DNA oligos against Coccus hesperidum, in comparison with long 56-mer single-stranded and double-stranded DNA sequences. The short oligos exhibited higher insecticidal activity. By day 9, the highest mortality rate (97.66 ± 4.04%) was recorded in the Coccus-11 group, while the most effective long sequence was the double-stranded DNA in the dsCoccus-56 group (77.09 ± 6.24%). This study also describes the architecture of the DNA containment (DNAc) mechanism, highlighting the intricate interactions between rRNAs and various types of DNA oligos. During DNAc, the Coccus-11 treatment induced enhanced ribosome biogenesis and ATP production through a metabolic shift from carbohydrates to lipid-based energy synthesis. However, this ultimately led to a ‘kinase disaster’ due to widespread kinase downregulation resulting from insufficient ATP levels. All DNA oligos with high or moderate complementarity to target rRNA initiated hypercompensation, but subsequent substantial rRNA degradation and insect mortality occurred only when the oligo sequence perfectly matched the rRNA. Both short and long oligonucleotide insecticide treatments led to a 3.75–4.25-fold decrease in rRNA levels following hypercompensation, which was likely mediated by a DNA-guided rRNase, such as RNase H1, while crucial enzymes of RNAi (DICER1, Argonaute 2, and DROSHA) were downregulated, indicating fundamental difference in molecular mechanisms of DNAc and RNAi. Consistently, significant upregulation of RNase H1 was detected in the Coccus-11 treatment group. In contrast, treatment with random DNA oligos resulted in only a 2–3-fold rRNA decrease, consistent with the normal rRNA half-life maintained by general ribonucleases. These findings reveal a fundamental new mechanism of rRNA regulation via complementary binding between exogenous unmodified antisense DNA and cellular rRNA. From a practical perspective, this minimalist approach, applying short antisense DNA dissolved in water, offers an effective, eco-friendly and innovative solution for managing sternorrhynchans and other insect pests. The results introduce a promising new concept in crop protection: DNA-programmable insect pest control. Full article
(This article belongs to the Special Issue New Insights into Plant and Insect Interactions (Second Edition))
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16 pages, 1994 KiB  
Article
Fall Webworm Host Plant Preferences Generate a Reduced Predation Enemy-Free Space in Its Interaction with Parasitoids
by Lina Pan, Wenfang Gao, Zhiqin Song, Xiaoyu Li, Yipeng Wei, Guangyan Qin, Yiping Hu, Zeyang Sun, Cuiqing Gao, Penghua Bai, Gengping Zhu, Wenjie Wang and Min Li
Insects 2025, 16(8), 804; https://doi.org/10.3390/insects16080804 - 4 Aug 2025
Abstract
Plants and insects are developing strategies to avoid each other’s defense systems. Host plants may release volatile compounds to attract the natural enemies of herbivores; insect pests may also select host plants that are deterrent to natural enemies to avoid such predation. Here [...] Read more.
Plants and insects are developing strategies to avoid each other’s defense systems. Host plants may release volatile compounds to attract the natural enemies of herbivores; insect pests may also select host plants that are deterrent to natural enemies to avoid such predation. Here we investigated whether the host plant preference of Hyphantria cunea correlates with the attractiveness of these plants to Chouioia cunea, a parasitoid wasp that serves as the primary natural enemy of H. cunea. We found Morus alba was the preferred host plant for female H. cunea. Although M. alba provided suboptimal nutritional value for H. cunea growth and development compared to other plants, it attracted fewer C. cunea relative to alternative host plants. Gas chromatography–mass spectrometry (GC–MS) coupled with gas chromatography–electroantennographic detection (GC-EAD) analysis identified six distinct compounds among the herbivore-induced plant volatiles (HIPVs) produced following H. cunea feeding. Notably, M. alba was the sole plant species that did not emit tridecane. These results suggest that H. cunea utilizes M. alba as a reduced predation enemy-free space, thereby minimizing parasitization by C. cunea. Our research emphasizes the importance of considering adaptive responses of herbivores within the context of multi-trophic relationships, rather than solely focusing on optimizing herbivore growth on the most nutritionally suitable plant host. Full article
(This article belongs to the Special Issue Advances in Chemical Ecology of Plant–Insect Interactions)
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28 pages, 2816 KiB  
Article
Influence of the Origin, Feeding Status, and Trypanosoma cruzi Infection in the Microbial Composition of the Digestive Tract of Triatoma pallidipennis
by Everardo Gutiérrez-Millán, Alba N. Lecona-Valera, Mario H. Rodriguez and Ana E. Gutiérrez-Cabrera
Biology 2025, 14(8), 984; https://doi.org/10.3390/biology14080984 (registering DOI) - 2 Aug 2025
Viewed by 259
Abstract
Triatoma pallidipennis, the main vector of Chagas disease in central Mexico, hosts a diverse and complex gut bacterial community shaped by environmental and physiological factors. To gain insight into these microbes’ dynamics, we characterised the gut bacterial communities of wild and insectary [...] Read more.
Triatoma pallidipennis, the main vector of Chagas disease in central Mexico, hosts a diverse and complex gut bacterial community shaped by environmental and physiological factors. To gain insight into these microbes’ dynamics, we characterised the gut bacterial communities of wild and insectary insects under different feeding and Trypanosoma cruzi infection conditions, using 16S rRNA gene sequencing. We identified 91 bacterial genera across 8 phyla, with Proteobacteria dominating most samples. Wild insects showed greater bacterial diversity, led by Acinetobacter and Pseudomonas, while insectary insects exhibited lower diversity and were dominated by Arsenophonus. The origin of the insects, whether they were reared in the insectary (laboratory) or collected from wild populations, was the principal factor structuring the gut microbiota, followed by feeding and T. cruzi infection. A stable core microbiota of 12 bacterial genera was present across all conditions, suggesting key functional roles in host physiology. Co-occurrence and functional enrichment analyses revealed that feeding and infection induced condition-specific microbial interactions and metabolic pathways. Our findings highlight the ecological plasticity of the triatomine gut microbiota and its potential role in modulating vector competence, providing a foundation for future microbiota-based control strategies. Full article
(This article belongs to the Special Issue Metabolic Interactions between the Gut Microbiome and Host)
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10 pages, 960 KiB  
Article
Study on the Vectoring Potential of Halyomorpha halys for Pantoea stewartii subsp. stewartii, the Pathogen Causing Stewart’s Disease in Maize
by Francesca Costantini, Agostino Strangi, Fabio Mosconi, Leonardo Marianelli, Giuseppino Sabbatini-Peverieri, Pio Federico Roversi and Valeria Scala
Agriculture 2025, 15(15), 1671; https://doi.org/10.3390/agriculture15151671 - 2 Aug 2025
Viewed by 170
Abstract
Pantoea stewartii subsp. stewartii (Pss) is a Gram-negative bacterium first documented in North America, and is the causal agent of Stewart’s disease in maize (Zea mays), especially in sweet corn. First identified in North America, it is primarily spread by insect [...] Read more.
Pantoea stewartii subsp. stewartii (Pss) is a Gram-negative bacterium first documented in North America, and is the causal agent of Stewart’s disease in maize (Zea mays), especially in sweet corn. First identified in North America, it is primarily spread by insect vectors like the corn flea beetle (Chaetocnema Pulicaria) in the United States. However, Pss has since spread globally—reaching parts of Africa, Asia, the Americas, and Europe—mainly through the international seed trade. Although this trade is limited, it has still facilitated the pathogen’s global movement, as evidenced by numerous phytosanitary interceptions. Recent studies in Italy, as indicated in the EFSA journal, reported that potential alternative vectors were identified, including Phyllotreta spp. and the invasive Asian brown marmorated stink bug (Halyomorpha halys); the latter tested positive in PCR screenings, raising concerns due to its broad host range and global distribution. This information has prompted studies to verify the ability of Halyomorpha halys to vector Pss to assess the risk and prevent the further spread of Pss in Europe. In this study, we explored the potential transmission of Pss by the brown marmorated stink bugs in maize plants, following its feeding on Pss-inoculated maize, as well as the presence of Pss within the insect’s body. Full article
(This article belongs to the Section Crop Protection, Diseases, Pests and Weeds)
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8 pages, 405 KiB  
Brief Report
Characterization of DNA Viruses in Hindgut Contents of Protaetia brevitarsis Larvae
by Jean Geung Min, Namkyong Min, Binh T. Nguyen, Rochelle A. Flores and Dongjean Yim
Insects 2025, 16(8), 800; https://doi.org/10.3390/insects16080800 - 1 Aug 2025
Viewed by 219
Abstract
The scarab species Protaetia brevitarsis, an edible insect, has been used in traditional medicine, as animal feed, and for converting agricultural organic wastes into biofertilizer. The intestinal tract, which contains a diverse array of microbiota, including viruses, plays a critical role in [...] Read more.
The scarab species Protaetia brevitarsis, an edible insect, has been used in traditional medicine, as animal feed, and for converting agricultural organic wastes into biofertilizer. The intestinal tract, which contains a diverse array of microbiota, including viruses, plays a critical role in animal health and homeostasis. We previously conducted a comparative analysis of the gut microbiota of third-instar larvae of P. brevitarsis obtained from five different farms and found significant differences in the composition of the gut bacterial microbiota between farms. To better understand the gut microbiota, the composition of DNA viruses in the hindgut contents of P. brevitarsis larvae obtained from five farms was investigated using metagenomic sequencing in this study. The β-diversity was significantly different between metagenomic data obtained from the five farms (PERMANOVA, pseudo-F = 46.95, p = 0.002). Family-based taxonomic analysis indicated that the relative abundance of viruses in the gut overall metagenome varied significantly between farms, with viral reads comprising approximately 41.2%, 15.0%, 4.3%, 4.0%, and 1.6% of metagenomic sequences from the farms Tohamsan gumbengi farm (TO), Secomnalagum gumbengi (IS), Gumbengi brothers (BR), Kyungpook farm (KB), and Jhbio (JH), respectively. More than 98% of the DNA viruses in the hindgut were bacteriophages, mainly belonging to the Siphoviridae family. At the species level, Phage Min1, infecting the genus Microbacterium, was detected in all farms, and it was the most abundant bacteriophage in intestinal microbiota, with a prevalence of 0.9% to 29.09%. The detected eukaryotic DNA viruses accounted for 0.01% to 0.06% of the intestinal microbiota and showed little or no relationship with insect viruses. Therefore, they most likely originated from contaminated feed or soil. These results suggest that the condition of substrates used as feed is more important than genetic factors in shaping the intestinal viral microbiota of P. brevitarsis larvae. These results can be used as reference data for understanding the hindgut microbiota of P. brevitarsis larvae and, more generally, the gut virome of insects. Full article
(This article belongs to the Topic Diversity of Insect-Associated Microorganisms)
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27 pages, 2289 KiB  
Review
Harnessing Chitin from Edible Insects for Livestock Nutrition
by Linda Abenaim and Barbara Conti
Insects 2025, 16(8), 799; https://doi.org/10.3390/insects16080799 - 1 Aug 2025
Viewed by 347
Abstract
In recent years, edible insects have gained significant attention as a sustainable and innovative source of feed for animal nutrition due to their excellent content of protein, fats, vitamins, and chitin. Among these, chitin is the least studied nutritional component, despite its promising [...] Read more.
In recent years, edible insects have gained significant attention as a sustainable and innovative source of feed for animal nutrition due to their excellent content of protein, fats, vitamins, and chitin. Among these, chitin is the least studied nutritional component, despite its promising properties and potential benefits. Chitin, an important polysaccharide found in the exoskeleton of arthropods, including insects, presents both negative and positive aspects in animal nutrition. As is known, the main drawback is its digestibility, which varies among livestock animal species depending on their ability to produce chitinase. However, chitin also exhibits benefits, including the enhancement of gut microbiota and immune response, together with the reduction in cholesterol and pathogen levels in animals. This review aims to summarise the current knowledge on the effects of chitin derived from edible insects on animal nutrition by analysing both the negative aspects and benefits for the different farmed animals for which insect feeding is legally permitted (fish, poultry, and pigs), while proposing future research directions. Full article
(This article belongs to the Special Issue Insects as the Nutrition Source in Animal Feed)
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13 pages, 513 KiB  
Article
Impact of Dietary Inputs on Carbapenem Resistance Gene Dynamics and Microbial Safety During Bioconversion of Agri-Food Waste and Anaerobic Digestate by Hermetia illucens Larvae
by Andrea Marcelli, Alessio Ilari, Vesna Milanović, Ester Foppa Pedretti, Kofi Armah Boakye-Yiadom, Federica Cardinali, Giorgia Rampanti, Andrea Osimani, Cristiana Garofalo and Lucia Aquilanti
Genes 2025, 16(8), 907; https://doi.org/10.3390/genes16080907 - 29 Jul 2025
Viewed by 192
Abstract
Background/Objectives: Hermetia illucens larvae can efficiently convert agri-food residues into high-protein biomass for animal feed and nutrient-rich frass for soil amendment. However, the potential spread of carbapenem resistance genes (CRGs), which confer resistance to last-resort carbapenem antibiotics, and Enterobacteriaceae, common carriers of [...] Read more.
Background/Objectives: Hermetia illucens larvae can efficiently convert agri-food residues into high-protein biomass for animal feed and nutrient-rich frass for soil amendment. However, the potential spread of carbapenem resistance genes (CRGs), which confer resistance to last-resort carbapenem antibiotics, and Enterobacteriaceae, common carriers of these genes and opportunistic pathogens, raises important safety concerns. This study aimed to assess the influence of different agri-food-based diets on Enterobacteriaceae loads and the CRG occurrence during the bioconversion process. Methods: Four experimental diets were formulated from agri-food residues and anaerobic digestate: Diet 1 (peas and chickpea waste), Diet 2 (peas and wheat waste), Diet 3 (onion and wheat waste), and Diet 4 (wheat waste and digestate). Enterobacteriaceae were quantified by viable counts, while five CRGs (blaKPC, blaNDM, blaOXA-48, blaVIM, and blaGES) were detected and quantified using quantitative PCRs (qPCRs). Analyses were performed on individual substrates, formulated diets, larvae (before and after bioconversion), and frass. Results: Plant-based diets sustained moderate Enterobacteriaceae loads. In contrast, the digestate-based diet led to a significant increase in Enterobacteriaceae in both the frass and mature larvae. CRGs were detected only in legume-based diets: blaVIM and blaGES were found in both mature larvae and frass, while blaOXA-48 and blaKPC were found exclusively in either larvae or frass. No CRGs were detected in onion- or digestate-based diets nor in young larvae or diet inputs. Conclusions: The findings suggest that the diet composition may influence the proliferation of Enterobacteriaceae and the persistence of CRGs. Careful substrate selection and process monitoring are essential to minimize antimicrobial resistance risks in insect-based bioconversion systems. Full article
(This article belongs to the Section Microbial Genetics and Genomics)
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15 pages, 2391 KiB  
Article
Host-Seeking and Acceptance Behaviour of Plodia interpunctella (Lepidoptera: Pyralidae) Larvae in Response to Volatile Compounds Emitted by Amaranth
by Mariana Cruz-Díaz, Humberto Reyes-Prado, Víctor R. Castrejón-Gómez and Paola Rossy García-Sosa
Agriculture 2025, 15(15), 1637; https://doi.org/10.3390/agriculture15151637 - 29 Jul 2025
Viewed by 250
Abstract
In this study, the seeking behaviour and food acceptance of larvae of Plodia interpunctella Hübner (Lepidoptera: Pyralidae) were analysed under laboratory conditions. Larval orientation and feeding preferences were assessed using a selection arena for neonate larvae and a four-way olfactometer for third-instar larvae. [...] Read more.
In this study, the seeking behaviour and food acceptance of larvae of Plodia interpunctella Hübner (Lepidoptera: Pyralidae) were analysed under laboratory conditions. Larval orientation and feeding preferences were assessed using a selection arena for neonate larvae and a four-way olfactometer for third-instar larvae. Stimulants included amaranth bars with additives (honey and chocolate) and natural amaranth (toasted grain only). The results showed that amaranth volatiles influence the orientation and feeding behaviour of this polyphagous insect. A marked preference for sugar-rich foods was observed, with amaranth with honey and amaranth with chocolate being the food sources most frequently chosen by the neonate larvae. These individuals exhibited a gregarious feeding behaviour and did not engage in cannibalism. The third-instar larvae also showed a preference for sweet food but were more attracted to the amaranth–additive combination. In the four-way olfactometer bioassays, chocolate was the most frequently chosen stimulus, while cellophane did not differ significantly from air. An analysis of volatile compounds by gas chromatography mass spectrometry (GC-MS) revealed that amaranth with chocolate releases more volatile compounds (16) compared with honey (12) and natural amaranth (6), suggesting that these volatiles could possibly influence the larvae’s choice of food source. Full article
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10 pages, 1002 KiB  
Article
Enhanced Sequence Evolution Rates Correlate with Significant Rearrangements in Coccoid Mitochondrial Genomes
by Lijuan Zhang, Junpeng Ji, Yuqiang Xi and Nan Song
Diversity 2025, 17(8), 515; https://doi.org/10.3390/d17080515 - 25 Jul 2025
Viewed by 235
Abstract
Scale insects, which belong to the superfamily Coccoidea within the order Hemiptera, encompass more than 8000 species worldwide. The adult females of these species are characterized by their immobility, and often lack wings and legs. Scale insects feed on plant tissues and can [...] Read more.
Scale insects, which belong to the superfamily Coccoidea within the order Hemiptera, encompass more than 8000 species worldwide. The adult females of these species are characterized by their immobility, and often lack wings and legs. Scale insects feed on plant tissues and can cause significant agricultural damage as pests. This study presents the sequencing of five coccoid mitogenomes, revealing detailed annotations and comparisons with other Hemiptera. The sequencing yielded between 73 million and over 121 million reads, allowing for the reconstruction of mitogenomes ranging from 12,821 to 14,446 nucleotides. Notably, a high A + T content was observed across the newly sequenced mitogenomes. Gene rearrangements were identified in all five newly sequenced mitogenomes, with the evolutionary rate analysis indicating that Coccoidea exhibit the highest Ka and Ka/Ks values among the hemipterans. In a phylogenetic context, the mitogenomes of representative species from Coccoidea and Aleyrodoidea exhibit more frequent mitochondrial gene rearrangements than those of other hemipteran groups. The analysis suggests that the frequent mitochondrial gene rearrangements observed in the coccoid species are associated with accelerated nucleotide substitution rates, supporting a connection between genetic evolution and structural variation in mitogenomes. Full article
(This article belongs to the Section Phylogeny and Evolution)
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11 pages, 1739 KiB  
Article
Metabolic and Behavioral Impacts of Gustatory Receptor NlGr23 Silencing in the Brown Planthopper
by Kui Kang, Jie Zhang, Renhan Fang and Jun Lü
Agronomy 2025, 15(8), 1797; https://doi.org/10.3390/agronomy15081797 - 25 Jul 2025
Viewed by 149
Abstract
The brown planthopper (BPH), Nilaparvata lugens, is the most destructive insect pest of rice. BPH infestations severely threaten rice yield worldwide. The gustatory receptor NlGr23 plays a critical role in mediating the repulsive reaction to oxalic acid of the BPH. We integrated [...] Read more.
The brown planthopper (BPH), Nilaparvata lugens, is the most destructive insect pest of rice. BPH infestations severely threaten rice yield worldwide. The gustatory receptor NlGr23 plays a critical role in mediating the repulsive reaction to oxalic acid of the BPH. We integrated transcriptomic and proteomic analyses to determine the metabolic and behavioral consequences of NlGr23 silencing. The RNAi-mediated knockdown of NlGr23 increased body weight and honeydew production, indicating enhanced feeding activity. The results of multiomics profiling revealed disrupted lipid homeostasis, identifying 187 differentially expressed genes and 150 differentially expressed proteins. These genes were enriched in pathways including glycerophospholipid metabolism, fatty acid biosynthesis, and AMPK signaling. The results of biochemical assays showed that NlGr23 silencing elevated triacylglycerol levels by 68.83%, and reduced glycerol and free fatty acid levels, suggesting impaired lipolysis. The NlGr23 loss-of-function mutation mechanistically activates the AMPK pathway, suppresses lipid breakdown, and promotes energy storage. This study established NlGr23 as a key regulator linking chemosensation to metabolic reprogramming, providing new insights into gustatory receptor-mediated energy homeostasis in the BPH. Full article
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30 pages, 1679 KiB  
Review
Advancing Circularity in Small-Scale Rural Aquaponics: Potential Routes and Research Needs
by Laura Silva, Francisco Javier Martinez-Cordero, Gösta Baganz, Daniela Baganz, Ariadne Hernández-Pérez, Eva Coronado and Maria Celia Portella
Resources 2025, 14(8), 119; https://doi.org/10.3390/resources14080119 - 23 Jul 2025
Viewed by 675
Abstract
Small-scale fisheries and aquaculture play a crucial role in securing food, income, and nutrition for millions, especially in the Global South. Rural small-scale aquaculture (SSA) is characterized by limited investment and technical training among farmers, diversification and dispersion of farms over large areas, [...] Read more.
Small-scale fisheries and aquaculture play a crucial role in securing food, income, and nutrition for millions, especially in the Global South. Rural small-scale aquaculture (SSA) is characterized by limited investment and technical training among farmers, diversification and dispersion of farms over large areas, reduced access to competitive markets for inputs and products, and family labor. Small-scale integrated circular aquaponic (ICAq) systems, in which systems’ component outputs are transformed into component inputs, have significant potential to increase circularity and promote economic development, especially in a rural context. We offer an integrated and comprehensive approach centered on aquaponics or aquaponic farming for small-scale aquaculture units. It aims to identify and describe a series of circular processes and causal links that can be implemented based on deep study in SSA and ICAq. Circular processes to treat by-products in ICAq include components like composting, vermicomposting, aerobic and anaerobic digestion, silage, and insect production. These processes can produce ICAq inputs such as seedling substrates, plant fertilizers, bioenergy, or feed ingredients. In addition, the plant component can supply therapeutic compounds. Further research on characterization of aquaponic components outputs and its quantifications, the impact of using circular inputs generated within the ICAq, and the technical feasibility and economic viability of circular processes in the context of SSA is needed. Full article
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14 pages, 4833 KiB  
Article
A High-Quality Chromosome-Level Genome Assembly and Comparative Analyses Provide Insights into the Adaptation of Chrysomya megacephala (Fabricius, 1794) (Diptera: Calliphoridae)
by Dan Zhang, Liangliang Li, Junchao Ma, Jianfeng Jin, Chunli Ding, Qiang Fang, Jianjun Jin, Zhulidezi Aishan and Xuebo Li
Biology 2025, 14(8), 913; https://doi.org/10.3390/biology14080913 - 22 Jul 2025
Viewed by 181
Abstract
Chrysomya megacephala, as one of the common blowflies, displays biological characteristics, such as ovoviviparity and carrion-feeding adaptation. Thus, this species is generally considered of significant ecological, medical, and forensic importance. However, without a high-quality pseudo-chromosome genome for C. megacephala, elucidating its [...] Read more.
Chrysomya megacephala, as one of the common blowflies, displays biological characteristics, such as ovoviviparity and carrion-feeding adaptation. Thus, this species is generally considered of significant ecological, medical, and forensic importance. However, without a high-quality pseudo-chromosome genome for C. megacephala, elucidating its evolutionary trajectory proved difficult. Herein, we assembled and analyzed a high-quality chromosome-level genome assembly of the C. megacephala, combined with PacBio HiFi long reads, Hi-C data, and Illumina reads. The pseudo-chromosomes assembly of C. megacephala spans 629.44 Mb, with 97.05% anchored to five chromosomes. Final assembly includes 1056 contigs (N50 = 1.68 Mb), and 97 scaffolds (N50 = 121.37 Mb), achieving 98.90% BUSCO completeness (n = 1367). Gene annotation predicted 17,071 protein-coding genes (95.60% BUSCO completeness), while repeat masking identified 244.26 Mb (38.82%) as repetitive elements. Additionally, 3740 non-coding RNAs were characterized. Gene family analyses resulted in 10,579 gene families, containing 151 gene families that experienced rapid evolution. Comparative genomic analyses showed that the expanded genes are related to reproduction and necrophagous habits. In addition, we annotated the gene family P450s, CCEs, IRs, GRs, and ORs, all of which represent remarkable expansion, playing a crucial role in the mechanism of locating the hosts for forensic insects. Our research establishes a high-quality genome sequence to facilitate subsequent molecular investigations into significant species within forensic entomology. Full article
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14 pages, 1146 KiB  
Article
Damage Potential and Feeding Preference of Halyomorpha halys (Stål), Nezara viridula (L.), and Leptoglossus zonatus (Dallas) Among Different Ripening Stages of Tomato
by Md Tafsir Nur Nabi Rashed, Adam G. Dale, Gideon Alake, Simon S. Riley, Nicole Benda and Amanda C. Hodges
Insects 2025, 16(7), 740; https://doi.org/10.3390/insects16070740 - 20 Jul 2025
Viewed by 460
Abstract
Tomato (Solanum lycopersicum L.) is one of the most preferred hosts of polyphagous stink bugs (Hemiptera: Pentatomidae) and leaf-footed bugs (Hemiptera: Coreidae). These hemipterans can infest tomato fruits at all stages of fruit ripening. However, it is unclear whether there is any [...] Read more.
Tomato (Solanum lycopersicum L.) is one of the most preferred hosts of polyphagous stink bugs (Hemiptera: Pentatomidae) and leaf-footed bugs (Hemiptera: Coreidae). These hemipterans can infest tomato fruits at all stages of fruit ripening. However, it is unclear whether there is any feeding preference for these true bugs among different ripening stages of tomato (green, breaker, pink, and red stages). Feeding and behavioral assays were performed to determine the feeding preference and damage potential of two common stink bugs—the brown marmorated stink bug (Halyomorpha halys (Stål)) and the southern green stink bug (Nezara viridula L.)—and a leaf-footed bug (Leptoglossus zonatus (Dallas)) among the various ripening stages of tomato. The results indicated that green is the most preferred ripening stage for N. viridula and L. zonatus, while pink tomatoes were found to be a more preferred feeding site for H. halys. Fully ripe red tomatoes were found to be the least preferred feeding site for all three insects. The findings of this study will be useful for developing fruit damage symptom-based monitoring programs and establishing economic threshold levels for these pests in tomatoes, as well as informing harvesting regimes. Full article
(This article belongs to the Collection Biology and Management of Sap-Sucking Pests)
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17 pages, 2091 KiB  
Article
A Novel Parvovirus Associated with the Whitefly Bemisia tabaci
by Fani Gousi, Zineb Belabess, Nathalie Laboureau, Michel Peterschmitt and Mikhail M. Pooggin
Pathogens 2025, 14(7), 714; https://doi.org/10.3390/pathogens14070714 - 19 Jul 2025
Viewed by 383
Abstract
The whitefly Bemisia tabaci (Hemiptera: Aleyrodoidea) causes direct feeding damage to crop plants and transmits pathogenic plant viruses, thereby threatening global food security. Although whitefly-infecting RNA viruses are known and proposed as biocontrol agents, no insect DNA virus has been found in any [...] Read more.
The whitefly Bemisia tabaci (Hemiptera: Aleyrodoidea) causes direct feeding damage to crop plants and transmits pathogenic plant viruses, thereby threatening global food security. Although whitefly-infecting RNA viruses are known and proposed as biocontrol agents, no insect DNA virus has been found in any member of Aleyrodoidea. Using rolling circle amplification (RCA) of viral DNA from whiteflies collected from crop fields in Morocco, followed by Illumina sequencing of the RCA products, we found a novel insect single-stranded (ss) DNA parvovirus (family Parvoviridae) in addition to plant ssDNA geminiviruses transmitted by whiteflies. Based on its genome organization with inverted terminal repeats and evolutionarily conserved proteins mediating viral DNA replication (NS1/Rep) and encapsidation (VP), encoded on the forward and reverse strands, respectively, we named this virus Bemisia tabaci ambidensovirus (BtaDV) and classified it as a founding member of a new genus within the subfamily Densovirinae. This subfamily also contains three distinct genera of ambisense densoviruses of other hemipteran insects (Aphidoidea, Coccoidea, and Psylloidea). Furthermore, we provide evidence for the genetic variants of BtaDV circulating in whitefly populations and for its partial sequences integrated into the B. tabaci genome, with one integrant locus potentially expressing a fusion protein composed of viral Rep endonuclease and host DNA-binding domains. This suggests a long-term virus-host interaction and neofunctionalization of BtaDV-derived endogenous viral elements. Full article
(This article belongs to the Section Viral Pathogens)
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