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15 pages, 4113 KiB  
Communication
Is Winter Feeder Visitation by Songbirds Risk-Dependent? An Experimental Study
by Brygida Manikowska-Ślepowrońska and Krzysztof Ślepowroński
Birds 2025, 6(3), 45; https://doi.org/10.3390/birds6030045 (registering DOI) - 17 Aug 2025
Abstract
Winter bird feeders provide high-energy food for birds when natural food resources are in short supply. We performed an experimental study including two treatments and a control to investigate the reactions of eight passerine species visiting a winter feeder to the presence of [...] Read more.
Winter bird feeders provide high-energy food for birds when natural food resources are in short supply. We performed an experimental study including two treatments and a control to investigate the reactions of eight passerine species visiting a winter feeder to the presence of a predator or a food competitor, measured by the number of visits and foraging time. We included in analyses the age and sex of the most numerous species, the Great Tit (Parus major). Our results showed that the number of feeder visits per 30 min differed significantly among species, treatments (predator, competitor, or control), and time intervals of time elapsed from the start of the treatment. The presence of food competitors and predation risk significantly deterred the birds from feeding at the feeder. The number of visits to the feeder by Great Tits was significantly affected by age (more frequent visits by immatures), sex (more frequent visits by males), treatment (less frequent visits by immatures during predation risk and by adults during both experiments), and the time elapsed since the start of the experiment (more frequent visits by adult females during the first eight time intervals after the start of the experiment). Surprisingly, the duration of the foraging visits to the feeder was significantly influenced by species (lower for all tit species compared to the other visiting species) and the time elapsed since the start of the treatment (shorter foraging duration during the first nine time intervals for Hawfinch (Coccothraustes coccothraustes), European Greenfinch (Chloris chloris) and European Robin (Erithacus rubecula)), but not by the treatment itself. This suggests that the decision to use the feeder is risk-dependent, but when birds choose to forage, their foraging time is risk-independent. Full article
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14 pages, 386 KiB  
Article
Exploring Multidimensional Risk Factors Associated with Local Adverse Reactions to Subcutaneous Immunoglobulin Therapy: Insights from a Nationwide Multicenter Study
by Sandra Martínez Mercader, Victor Garcia-Bustos, Pedro Moral Moral, Carmen Martínez Buenaventura, Elisa Escudero Vergara, María Carmen Montaner Bosch, Héctor Balastegui-Martín, Sonia Galindo Maycas, Miriam González Amores, Noemí Gimenez Sanz, Marian Escobar Palazón, María Moreno Mulet, Ignacio Campanero Carrasco, Alicia López, Carlos Daniel Hernández Ruiz, Laura Ruiz-López, Rocío Guzmán Guzmán and Marta Dafne Cabañero-Navalon
Biomedicines 2025, 13(8), 1991; https://doi.org/10.3390/biomedicines13081991 - 15 Aug 2025
Abstract
Background/Objectives: Subcutaneous immunoglobulin (SCIg) is a well-established alternative to intravenous immunoglobulin (IVIg) in patients with primary (PID) and secondary immunodeficiency (SID), with demonstrated benefits in safety and quality of life. However, its implementation remains limited in parts of Southern Europe, partly due [...] Read more.
Background/Objectives: Subcutaneous immunoglobulin (SCIg) is a well-established alternative to intravenous immunoglobulin (IVIg) in patients with primary (PID) and secondary immunodeficiency (SID), with demonstrated benefits in safety and quality of life. However, its implementation remains limited in parts of Southern Europe, partly due to frequent local adverse reactions (LARs), which, despite being mild, can affect adherence and clinician confidence. This study aimed to identify clinical, anatomical, psychosocial, and geographical factors associated with LARs and to develop an exploratory model for individualized risk estimation. Methods: We conducted a retrospective, multicenter observational study in eight Spanish hospitals using data from the GEIE Registry. Patients aged ≥14 years with PID or SID receiving SCIg for ≥1 month were included. Demographic, clinical, anatomical, and psychosocial variables were collected. A multivariable logistic regression model was built to identify independent predictors of LARs and internally validated using bootstrap resampling (500 iterations). A nomogram was constructed for personalized risk prediction. Results: Among 223 included patients, 73.1% reported LARs, primarily swelling, pruritus, and rash. Independent predictors included smaller abdominal perimeter (OR 0.955, p < 0.001), history of skin disease (OR 2.75, p = 0.044), greater distance to hospital (OR 1.01, p = 0.050), and absence of anxiety (OR 0.089, p = 0.001). Model discrimination was good (AUC 0.801), with minimal optimism after internal validation (validated AUC 0.788). Conclusions: LARs are common among patients receiving SCIg and could be influenced by anatomical, dermatological, psychological, and geographical factors. This exploratory multicenter study underscores the clinical relevance of these factors and may guide more personalized and safer use of SCIg. Full article
(This article belongs to the Collection Feature Papers in Immunology and Immunotherapy)
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14 pages, 1025 KiB  
Article
Targeted Whole Genome Sequencing of African Swine Fever Virus and Classical Swine Fever Virus on the MinION Portable Sequencing Platform
by Chester D. McDowell, Taeyong Kwon, Patricia Assato, Emily Mantlo, Jessie D. Trujillo, Natasha N. Gaudreault, Leonardo C. Caserta, Igor Morozov, Jayme A. Souza-Neto, Roman M. Pogranichniy, Diego G. Diel and Juergen A. Richt
Pathogens 2025, 14(8), 804; https://doi.org/10.3390/pathogens14080804 - 13 Aug 2025
Viewed by 211
Abstract
African swine fever virus (ASFV) and classical swine fever virus (CSFV) are important transboundary animal diseases (TADs) affecting swine. ASFV is a large DNA virus with a genome size of 170–190+ kilobases (kB) belonging to the family Asfarviridae, genus Asfivirus. CSFV is [...] Read more.
African swine fever virus (ASFV) and classical swine fever virus (CSFV) are important transboundary animal diseases (TADs) affecting swine. ASFV is a large DNA virus with a genome size of 170–190+ kilobases (kB) belonging to the family Asfarviridae, genus Asfivirus. CSFV is a single-stranded RNA virus with a genome size of approximately 12 kB, belonging to the family Flaviviridae, genus Pestivirus. Outbreaks involving either one of these viruses result in similar disease syndromes and significant economic impacts from: (i) high morbidity and mortality events; (ii) control measures which include culling and quarantine; and (iii) export restrictions of swine and pork products. Current detection methods during an outbreak provide minimal genetic information on the circulating virus strains/genotypes that are important for tracing and vaccine considerations. The increasing availability and reduced cost of next-generation sequencing (NGS) allow for the establishment of NGS protocols for the rapid identification and complete genetic characterization of outbreak strains during an investigation. NGS data provides a better understanding of viral spread and evolution, facilitating the development of novel and effective control measures. In this study, panels of primers spanning the genomes of ASFV and CSFV were independently developed to generate approximately 10 kB and 6 kB amplicons, respectively. The primer panels consisted of 19 primer pairs for ASFV and 2 primer pairs for CSFV, providing whole genome amplification of each pathogen. These primer pools were further optimized for batch pooling and thermocycling conditions, resulting in a total of 5 primer pools/reactions used for ASFV and 2 primer pairs/reactions for CSFV. The ASFV primer panel was tested on viral DNA extracted from blood collected from pigs experimentally infected with ASFV genotype I and genotype II viruses. The CSFV primer panel was tested on 11 different strains of CSFV representing the three known CSFV genotypes, and 21 clinical samples collected from pigs experimentally infected with two different genotype 1 CSF viruses. ASFV and CSFV amplicons from optimized PCR were subsequently sequenced on the Oxford Nanopore MinION platform. The targeted protocols for these viruses resulted in an average coverage greater than 1000X for ASFV, with 99% of the genome covered, and 10,000X–20,000X for CSFV, with 97% to 99% of the genomes covered. The ASFV targeted whole genome sequencing protocol has been optimized for genotype II ASF viruses that have been responsible for the more recent outbreaks outside of Africa. The CSFV targeted whole genome sequencing protocol has universal applications for the detection of all CSFV genotypes. Protocols developed and evaluated here will be essential complementary tools for early pathogen detection and differentiation, as well as genetic characterization of these high-consequence swine viruses, globally and within the United States, should an outbreak occur. Full article
(This article belongs to the Section Viral Pathogens)
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30 pages, 2261 KiB  
Article
Multilayer Perceptron Mapping of Subjective Time Duration onto Mental Imagery Vividness and Underlying Brain Dynamics: A Neural Cognitive Modeling Approach
by Matthew Sheculski and Amedeo D’Angiulli
Mach. Learn. Knowl. Extr. 2025, 7(3), 82; https://doi.org/10.3390/make7030082 - 13 Aug 2025
Viewed by 318
Abstract
According to a recent experimental phenomenology–information processing theory, the sensory strength, or vividness, of visual mental images self-reported by human observers reflects the intensive variation in subjective time duration during the process of generation of said mental imagery. The primary objective of this [...] Read more.
According to a recent experimental phenomenology–information processing theory, the sensory strength, or vividness, of visual mental images self-reported by human observers reflects the intensive variation in subjective time duration during the process of generation of said mental imagery. The primary objective of this study was to test the hypothesis that a biologically plausible essential multilayer perceptron (MLP) architecture can validly map the phenomenological categories of subjective time duration onto levels of subjectively self-reported vividness. A secondary objective was to explore whether this type of neural network cognitive modeling approach can give insight into plausible underlying large-scale brain dynamics. To achieve these objectives, vividness self-reports and reaction times from a previously collected database were reanalyzed using multilayered perceptron network models. The input layer consisted of six levels representing vividness self-reports and a reaction time cofactor. A single hidden layer consisted of three nodes representing the salience, task positive, and default mode networks. The output layer consisted of five levels representing Vittorio Benussi’s subjective time categories. Across different models of networks, Benussi’s subjective time categories (Level 1 = very brief, 2 = brief, 3 = present, 4 = long, 5 = very long) were predicted by visual imagery vividness level 1 (=no image) to 5 (=very vivid) with over 90% success in classification accuracy, precision, recall, and F1-score. This accuracy level was maintained after 5-fold cross validation. Linear regressions, Welch’s t-test for independent coefficients, and Pearson’s correlation analysis were applied to the resulting hidden node weight vectors, obtaining evidence for strong correlation and anticorrelation between nodes. This study successfully mapped Benussi’s five levels of subjective time categories onto the activation patterns of a simple MLP, providing a novel computational framework for experimental phenomenology. Our results revealed structured, complex dynamics between the task positive network (TPN), the default mode network (DMN), and the salience network (SN), suggesting that the neural mechanisms underlying temporal consciousness involve flexible network interactions beyond the traditional triple network model. Full article
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15 pages, 6539 KiB  
Article
Atmospheric Plasma Etching-Assisted Chemical Mechanical Polishing for 4H-SiC: Parameter Optimization and Surface Mechanism Analysis
by Mengmeng Shen, Min Wei, Xuelai Li, Julong Yuan, Wei Hang and Yunxiao Han
Processes 2025, 13(8), 2550; https://doi.org/10.3390/pr13082550 - 13 Aug 2025
Viewed by 171
Abstract
Silicon carbide (SiC) is widely utilized in semiconductors, microelectronics, optoelectronics, and other advanced technologies. However, its inherent characteristics, such as its hardness, brittleness, and high chemical stability, limit the processing efficiency and application of SiC wafers. This study explores the use of plasma [...] Read more.
Silicon carbide (SiC) is widely utilized in semiconductors, microelectronics, optoelectronics, and other advanced technologies. However, its inherent characteristics, such as its hardness, brittleness, and high chemical stability, limit the processing efficiency and application of SiC wafers. This study explores the use of plasma etching as a pre-treatment step before chemical mechanical polishing (CMP) to enhance the material removal rate and improve CMP efficiency. Experiments were designed based on the Taguchi method to investigate the etching rate of plasma under various processing parameters, including applied power, nozzle-to-substrate distance, and etching time. The experimental results indicate that the etching rate is directly proportional to the applied power and increases with nozzle-to-substrate distance within 3–5 mm, while it is independent of etching time. A maximum etching rate of 5.99 μm/min is achieved under optimal conditions. And the etching mechanism and microstructural changes in SiC during plasma etching were analyzed using X-ray photoelectron spectroscopy (XPS), scanning electron microscopy (SEM), white light interferometry, and ultra-depth-of-field microscopy. XPS confirmed the formation of a softened SiO2 layer, which reduces hardness and enhances CMP efficiency; SEM revealed that etching pits form in relation to distance; and white light interferometry demonstrated that etching causes a smooth surface to become rough. Additionally, surface defects resulting from the etching process were analyzed to reveal the underlying reaction mechanism. Full article
(This article belongs to the Special Issue Processes in 2025)
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12 pages, 1043 KiB  
Article
Impact of Vaccination and Prior Infection on SARS-CoV-2 Viral Load in Preschool Children During the Omicron Pandemic
by Mitsuyoshi Suzuki, Akifumi Tokita, Mariko Inaba, Yoshimi Tada, Kyoko Shuri, Asako Miura, Mitsuharu Fukazawa, Masashi Fujioka, Yuko Sakai-Tagawa, Seiya Yamayoshi, Kiyoko Iwatsuki-Horimoto, Yoshihiro Kawaoka and Masaaki Miyazawa
Vaccines 2025, 13(8), 850; https://doi.org/10.3390/vaccines13080850 - 11 Aug 2025
Viewed by 499
Abstract
Background: Preschool-aged children can have difficulty adhering to infection control measures and were affected during the Omicron wave of the coronavirus disease 2019 (COVID-19) pandemic. However, the impacts of prior severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection and vaccination on viral load [...] Read more.
Background: Preschool-aged children can have difficulty adhering to infection control measures and were affected during the Omicron wave of the coronavirus disease 2019 (COVID-19) pandemic. However, the impacts of prior severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection and vaccination on viral load in this age group remain poorly understood. This study aimed to investigate the relationship between previous SARS-CoV-2 infection, COVID-19 vaccination, and viral load or clinical severity in preschool-aged children infected during the Omicron variant epidemic in Japan. Methods: This prospective observational study investigated 107 children aged 1–75 months who were diagnosed with COVID-19 between May and September 2023. Rapid antigen (Ag) tests were performed on days 1 and 5 or 6, and results were visually graded into four categories (–, ±, 1+, or 2+). Ag results were validated against quantitative real-time reverse transcription polymerase chain reaction (RT-qPCR) cycle threshold (Ct) values. Clinical parameters, including vaccination status, previous infection, age, maximum body temperature, and fever duration, were analyzed using multivariate regression models. Results: Higher Ag loads (1+/2+) were more frequently observed in younger children who had not experienced prior infection or full vaccination. Prior infection and vaccination were independently linked to lower Ag loads and reduced maximum body temperature. Many unvaccinated and infection-naïve children continued to show elevated Ag levels on day 5 or 6, corresponding to Ct values suggestive of potential infectivity. Conclusions: Prior SARS-CoV-2 infection and vaccination were linked to lower viral loads and milder febrile responses among preschool-aged children. These findings enhance our understanding of infection dynamics in this age group and may inform future discussions on public health strategies in pediatric settings. Full article
(This article belongs to the Special Issue Host–Virus Interactions and Vaccine Development)
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10 pages, 1061 KiB  
Proceeding Paper
Effect of Nitrogen Oxide Concentration Levels and Meteorological Variables on Ozone (O3) Formation in the Petrochemical Industry Area in the Monterrey Metropolitan, Mexico
by Jailene Marlen Jaramillo-Perez, Bárbara A. Macías-Hernández, Edgar Tello-Leal and René Ventura-Houle
Environ. Earth Sci. Proc. 2025, 34(1), 3; https://doi.org/10.3390/eesp2025034003 - 8 Aug 2025
Viewed by 112
Abstract
The petrochemical industry emits large amounts of nitrogen oxides (NOx). It is the second source of volatile organic compounds (VOCs), which, through photochemical reactions, can form tropospheric ozone (O3) and, together with geographic and meteorological conditions, influence the spatial and temporal [...] Read more.
The petrochemical industry emits large amounts of nitrogen oxides (NOx). It is the second source of volatile organic compounds (VOCs), which, through photochemical reactions, can form tropospheric ozone (O3) and, together with geographic and meteorological conditions, influence the spatial and temporal behavior of pollution. The objective of this study is to assess the influence of air pollutants NOx, NO2, and NO, as well as meteorological factors on O3 concentration levels in the city of Cadereyta, Nuevo Leon, which is characterized by its petrochemical industry as part of the metropolitan area of Monterrey, Mexico. The data were analyzed using the Spearman’s correlation coefficient, identifying a weak-to-moderate negative association between NOx and NO2 with O3 in the spring season and a null relationship in the summer. However, the autumn and winter seasons observed a moderate to strong negative relationship. Subsequently, a multiple linear regression analysis determined the influence of air pollutants NOx, NO2, and NO, as well as meteorological factors on O3 concentration levels. In this sense, when the concentration levels of NOx and NO2 decrease, the concentration of O3 will increase proportionally according to the season of the year. The prediction model obtains a coefficient of determination (R2) of 0.60 and a root-mean-square error (RMSE) value of 0.0096 ppm. In the prediction model, all variables presented a significant effect on the interpretation of the dependent variable. The independent variables that provided the most significant variation in the concentration levels of O3 were NOx and NO2. Full article
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15 pages, 2022 KiB  
Article
Dual-Emission Au-Ag Nanoclusters with Enhanced Photoluminescence and Thermal Sensitivity for Intracellular Ratiometric Nanothermometry
by Helin Liu, Zhongliang Zhou, Zhiwei Wang, Jianhai Wang, Yu Wang, Lu Huang, Tianhuan Guo, Rongcheng Han and Yuqiang Jiang
Biosensors 2025, 15(8), 510; https://doi.org/10.3390/bios15080510 - 6 Aug 2025
Viewed by 291
Abstract
We report the development of highly luminescent, bovine serum albumin (BSA)-stabilized gold–silver bimetallic nanoclusters (Au-AgNCs@BSA) as a novel platform for high-sensitivity, ratiometric intracellular temperature sensing. Precise and non-invasive temperature sensing at the nanoscale is crucial for applications ranging from intracellular thermogenesis monitoring to [...] Read more.
We report the development of highly luminescent, bovine serum albumin (BSA)-stabilized gold–silver bimetallic nanoclusters (Au-AgNCs@BSA) as a novel platform for high-sensitivity, ratiometric intracellular temperature sensing. Precise and non-invasive temperature sensing at the nanoscale is crucial for applications ranging from intracellular thermogenesis monitoring to localized hyperthermia therapies. Traditional luminescent thermometric platforms often suffer from limitations such as high cytotoxicity and low photostability. Here, we synthesized Au-AgNCs@BSA via a one-pot aqueous reaction, achieving significantly enhanced photoluminescence quantum yields (PL QYs, up to 18%) and superior thermal responsiveness compared to monometallic counterparts. The dual-emissive Au-AgNCs@BSA exhibit a linear ratiometric fluorescence response to temperature fluctuations within the physiological range (20–50 °C), enabling accurate and concentration-independent thermometry in live cells. Time-resolved PL and Arrhenius analyses reveal two distinct emissive states and a high thermal activation energy (Ea = 199 meV), indicating strong temperature dependence. Silver doping increases radiative decay rates while maintaining low non-radiative losses, thus amplifying fluorescence intensity and thermal sensitivity. Owing to their small size, excellent photostability, and low cytotoxicity, these nanoclusters were applied to non-invasive intracellular temperature mapping, presenting a promising luminescent nanothermometer for real-time cellular thermogenesis monitoring and advanced bioimaging applications. Full article
(This article belongs to the Section Nano- and Micro-Technologies in Biosensors)
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13 pages, 843 KiB  
Article
Orange Allergy Beyond LTP: IgE Recognition of Germin-like Proteins in Citrus Fruits
by M. Soledad Zamarro Parra, Montserrat Martínez-Gomaríz, Alan Hernández, Javier Alcover, Isabel Dobski, David Rodríguez, Ricardo Palacios and Antonio Carbonell
Curr. Issues Mol. Biol. 2025, 47(8), 621; https://doi.org/10.3390/cimb47080621 - 5 Aug 2025
Viewed by 288
Abstract
Orange allergy is estimated to account for up to 3–4% of food allergies. Major allergens identified in orange (Citrus sinensis) include Cit s 1 (germin-like protein) and Cit s 2 (profilin), while Cit s 3 (non-specific lipid transfer protein, nsLTP) and [...] Read more.
Orange allergy is estimated to account for up to 3–4% of food allergies. Major allergens identified in orange (Citrus sinensis) include Cit s 1 (germin-like protein) and Cit s 2 (profilin), while Cit s 3 (non-specific lipid transfer protein, nsLTP) and Cit s 7 (gibberellin-regulated protein) have also been described. The objective of this study was to investigate the presence and IgE-binding capacity of germin-like proteins in citrus fruits other than oranges. We describe five patients with immediate allergic reactions after orange ingestion. All patients underwent skin prick tests (SPT) to aeroallergens and common food allergens, prick-by-prick testing with orange, lemon, and mandarin (pulp, peel, seeds), total IgE, specific IgE (sIgE), anaphylaxis scoring (oFASS), and the Food Allergy Quality of Life Questionnaire (FAQLQ-AF). Protein extracts from peel and pulp of orange, lemon, and mandarin were analyzed by Bradford assay, SDS-PAGE, and IgE immunoblotting using patient sera. Selected bands were identified by peptide mass fingerprinting. A 23 kDa band was recognized by all five patients in orange (pulp and peel), lemon (peel), and mandarin (peel). This band was consistent with Cit s 1, a germin-like protein already annotated in the IUIS allergen database for orange but not for lemon or mandarin. Peptide fingerprinting confirmed the germin-like identity of the 23 kDa bands in all three citrus species. Germin-like proteins of approximately 23 kDa were identified as IgE-binding components in peel extracts of orange, lemon, and mandarin, and in orange pulp. These findings suggest a potential shared allergen across citrus species that may contribute to allergic reactions independent of LTP sensitization. Full article
(This article belongs to the Section Molecular Plant Sciences)
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24 pages, 2828 KiB  
Article
Determining the Ground Reaction Force Value and Location for Each Foot During Bipedal Stance Exercises from a Single Forceplate
by Adrián Schmedling, Erik Macho, Francisco J. Campa, Ruben Valenzuela, Mikel Diez, Javier Corral, Paul Diego, Saioa Herrero and Charles Pinto
Sensors 2025, 25(15), 4796; https://doi.org/10.3390/s25154796 - 4 Aug 2025
Viewed by 324
Abstract
In the study of biomechanical models, balance represents a complex problem due to the issue of indeterminate forces while standing. In order to solve this problem, it is essential to measure the ground reaction forces (GRFs) applied to each foot independently. The present [...] Read more.
In the study of biomechanical models, balance represents a complex problem due to the issue of indeterminate forces while standing. In order to solve this problem, it is essential to measure the ground reaction forces (GRFs) applied to each foot independently. The present work proposes a methodology for determining the independent GRF applied to each foot while standing when only one forceplate is available. For this purpose, an analytical method is proposed to determine the distribution of vertical GRFs and the position of the independent center of pressure (CoP) in each foot. Concurrently, several neural network (NN) models are trained to improve the results obtained. This hypothesis is experimentally validated by a self-developed device that allows one to simultaneously obtain the vertical GRF and CoP location of each foot at the same time that the GRF and the global CoP location are obtained from a single forceplate. The results obtained achieve a CoP position error of less than 8% and a vertical force error of 2%. The analytical hypothesis is demonstrated to offer a satisfactory level of precision, while the NN is shown to result in considerable improvement in some cases. Full article
(This article belongs to the Collection Medical Applications of Sensor Systems and Devices)
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16 pages, 3996 KiB  
Article
Genes Associated with the Accumulation of Proanthocyanidins in Nelumbo nucifera Gaertn
by Wanyue Zhao, Lin Zhao, Shaoyuan Chen, Ruimin Nie, Yi Xu and Longqing Chen
Agriculture 2025, 15(15), 1674; https://doi.org/10.3390/agriculture15151674 - 2 Aug 2025
Viewed by 294
Abstract
Proanthocyanidins are a subclass of flavonoids formed through a poorly understood polymerization process that forms chains of 3–30 catechins and epi-catechins. Proanthocyanidins serve as UV protectants and antifeedants that accumulate in diverse plant species, including the lotus. To identify candidate genes underlying proanthocyanidin [...] Read more.
Proanthocyanidins are a subclass of flavonoids formed through a poorly understood polymerization process that forms chains of 3–30 catechins and epi-catechins. Proanthocyanidins serve as UV protectants and antifeedants that accumulate in diverse plant species, including the lotus. To identify candidate genes underlying proanthocyanidin synthesis and polymerization, we generated and functionally annotated transcriptomes from seedpods and seed epicarps of two lotus cultivars, “Guoqing Hong” and “Space Lotus”, which accumulate markedly divergent proanthocyanidin levels across the immature, near-mature, and mature developmental stages. Our transcriptome analysis was based on a total of 262.29 GB of raw data. We aligned the transcriptome data with the lotus genome and obtained an alignment efficiency that ranged from 91.74% to 96.44%. Based on the alignment results, we discovered 4774 new genes and functionally annotated 3232 genes. A total of 14,994 differentially expressed genes (DEGs) were identified from two-by-two comparisons of transcript libraries. We found 61 DEGs in the same developmental stage in the same tissue of different species. Comparative transcriptome analysis of seedpods and seed epicarps from two cultivars identified 14,994 differentially expressed genes (DEGs), of which 10 were functionally associated with proanthocyanidin synthesis and 9 were possibly implicated in the polymerization reactions. We independently quantified the expression of the candidate genes using qRT-PCR. Significant differences in the expression of candidate genes in different tissues and periods of lotus species are consistent with particular genes contributing to the polymerization of catechins and epi-catechins into proanthocyanidins in lotus seedpods and seed epicarps. Full article
(This article belongs to the Section Crop Genetics, Genomics and Breeding)
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12 pages, 736 KiB  
Article
Visual Search Test for Residents Chronically Exposed to Methylmercury in the Minamata Area
by Shigeru Takaoka and Kenta Matsunaga
Toxics 2025, 13(8), 657; https://doi.org/10.3390/toxics13080657 - 31 Jul 2025
Viewed by 511
Abstract
In individuals exposed to relatively mild methylmercury, even if they appeared to be independent in activities of daily living (ADL), slower judgment and motor responses in daily activities were observed, suggesting potential cognitive impairment. To quantitatively assess this impairment, we measured reaction time [...] Read more.
In individuals exposed to relatively mild methylmercury, even if they appeared to be independent in activities of daily living (ADL), slower judgment and motor responses in daily activities were observed, suggesting potential cognitive impairment. To quantitatively assess this impairment, we measured reaction time (RT) in a visual search test, as a visual cognitive ability test. The study participants included 24 residents from contaminated areas with sensory impairments in the limbs but no visual field defects (E group), as well as 12 individuals from non-contaminated areas (Group C). The 24 participants from contaminated areas were further divided into two groups: 12 without hand motor coordination disorders (Group E-HA) and 12 with such disorders (Group E+HA). Participants were instructed to search for the target letter “Z” on a computer screen, and the visual stimuli consisted of two, six, or ten alphabet letters. An equal number of trials contained “Z” and did not contain “Z,” for a total of thirty trials, which were conducted twice. RT was significantly longer in Group E+HA, followed by Group E-HA, and then Group C. However, in the second test, RT decreased in all cases, with a greater reduction in the exposed groups compared to the control group. These results suggest that methylmercury exposure may cause cognitive impairment, yet it also possesses plasticity. Full article
(This article belongs to the Special Issue Health Effects of Exposure to Environmental Pollutants—2nd Edition)
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9 pages, 6176 KiB  
Case Report
Concurrent Leydig and Sertoli Cell Tumors Associated with Testicular Mycosis in a Dog: A Case Report and Literature Review
by Mirosław Kuberka, Przemysław Prządka and Stanisław Dzimira
Pathogens 2025, 14(8), 752; https://doi.org/10.3390/pathogens14080752 - 31 Jul 2025
Viewed by 269
Abstract
Mycosis is caused by, among other factors, filamentous fungi, ubiquitous molds belonging to Aspergillus spp. which are often opportunistic pathogens. Over 100 species of Aspergillus have been described. The most common species responsible for diseases in humans and animals are Aspergillus fumigatus and [...] Read more.
Mycosis is caused by, among other factors, filamentous fungi, ubiquitous molds belonging to Aspergillus spp. which are often opportunistic pathogens. Over 100 species of Aspergillus have been described. The most common species responsible for diseases in humans and animals are Aspergillus fumigatus and Aspergillus niger, with Aspergillus flavus and Aspergillus clavatus being somewhat rarer. Aspergillus causes a range of diseases, from localized colonization and hypersensitivity reactions, through chronic necrotizing infections, to rapidly progressing angioinvasion and dissemination, leading to death. Testicular mycosis is extremely rarely described in both humans and animals. No studies in the literature report a simultaneous occurrence of testicular tumors and fungal infection of the organ, so the aim of this paper was to describe, for the first time, a case of two independent testicular tumors coexisting with testicular mycosis. A histopathological examination was performed on the left testicle of a male dog, specifically a mixed-breed dog resembling a husky weighing 22 kg and with an age of 8 years. Bilateral orchidectomy was performed for medical reasons due to the altered outline of the left testicle, leading to scrotal deformation. The dog did not show any clinical signs of illness, and the testicles were not painful. The right testicle, according to the operating veterinarian, showed no macroscopic changes, so histopathological verification was not performed. Microscopic imaging of the changes clearly indicated the coexistence of a tumor process involving Leydig cells (Leydigoma, interstitial cell tumor, ICT), Sertoli cells (Sertolioma), and fungal infection of the testis. The case suggests the possibility of the coexistence of tumor processes, which may have impaired local immune response of the tissue, with an infectious, in this case fungal, inflammatory process. Based on the literature, this paper is the first report on the occurrence of two independent histotype testicular tumors and their associated mycosis. Full article
(This article belongs to the Special Issue Rare Fungal Infection Studies)
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18 pages, 1324 KiB  
Article
Trunk Laterality Judgement in Chronic Low Back Pain: Influence of Low Back Pain History, Task Complexity, and Clinical Correlates
by Thomas Matheve, Lotte Janssens, Annick Timmermans, Nina Goossens, Lieven Danneels, Hannes Meirezonne, Michiel Brandt and Liesbet De Baets
J. Clin. Med. 2025, 14(15), 5328; https://doi.org/10.3390/jcm14155328 - 28 Jul 2025
Viewed by 256
Abstract
Background/Objectives: Left/right discrimination (LRD) training is increasingly being used in the treatment of chronic low back pain (CLBP). However, it is unclear whether trunk LRD-performance is impaired in CLBP patients and whether clinical parameters are related to LRD-performance. Therefore, this cross-sectional study [...] Read more.
Background/Objectives: Left/right discrimination (LRD) training is increasingly being used in the treatment of chronic low back pain (CLBP). However, it is unclear whether trunk LRD-performance is impaired in CLBP patients and whether clinical parameters are related to LRD-performance. Therefore, this cross-sectional study aimed to examine (1) whether LRD-performance differs between CLBP patients and pain-free individuals; (2) whether these differences depend on the low back pain (LBP) history in pain-free individuals; (3) if clinical factors are related to LRD-performance; (4) whether LRD-task difficulty influences these results. Methods: Participants included 150 pain-free persons (107 with no LBP-history; 43 with past LBP) and 150 patients with CLBP. All participants performed the LRD-task in a simple and complex condition. Outcomes were reaction time and accuracy. Results: CLBP patients were significantly slower (Cohen’s d = 0.47 to 0.50, p < 0.001) and less accurate (Cohen’s d = 0.30 to 0.55, p < 0.001) than pain-free individuals without LBP-history, but not compared to those with past LBP (Cohen’s d reaction time = 0.07 to 0.15, p = 0.55; Cohen’s d accuracy = 0.03 to 0.28, p-value = 0.28). All participant groups were slower and less accurate in the complex condition, but between-groups differences were independent of task difficulty. Linear mixed models showed that older age and lower education were independently associated with less accuracy. When controlling for demographics, pain intensity, disability, fear of movement, pain-related worry and pain duration were not related to LRD-performance in patients with CLBP. Conclusions: Patients with CLBP showed impaired trunk LRD-performance compared to pain-free persons without LBP history, but not compared to those with past LBP. When controlling for demographics, clinical parameters were not related to LRD-performance in patients with CLBP. Our findings indicate that LRD-performance may remain impaired after recovering from LBP. Full article
(This article belongs to the Section Clinical Rehabilitation)
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11 pages, 760 KiB  
Article
The Role of Polymerase Chain Reaction (PCR) and Quantification Cycle Values in the Diagnosis of Pneumocystis jirovecii Pneumonia
by Tal Abramovich, Maya Korem, Rottem Kuint, Ayelet Michael-Gayego, Jacob Moran-Gilad and Karen Olshtain-Pops
J. Fungi 2025, 11(8), 557; https://doi.org/10.3390/jof11080557 - 28 Jul 2025
Viewed by 358
Abstract
Introduction: This study aimed to assess the accuracy of real-time polymerase chain reaction (PCR) as a diagnostic tool for Pneumocystis jirovecii pneumonia (PCP) in immunocompromised patients and evaluate the applicability of quantification cycle (Cq) data for PCP diagnosis. Methods: Clinical and [...] Read more.
Introduction: This study aimed to assess the accuracy of real-time polymerase chain reaction (PCR) as a diagnostic tool for Pneumocystis jirovecii pneumonia (PCP) in immunocompromised patients and evaluate the applicability of quantification cycle (Cq) data for PCP diagnosis. Methods: Clinical and laboratory data were collected from medical records of 96 immunocompromised patients hospitalized at the Hadassah hospital from 2018 to 2022, for lower respiratory tract infection. PCP diagnosis was independently categorized by two infectious disease specialists, blinded to PCR results, as either “definite” (confirmed by microscopic identification of P. jirovecii) or “probable” (compatible clinical data and negative microscopy). Clinical characteristics, PCR test performance, and Cq values were then compared between these PCP diagnostic groups and a control group of 85 patients who underwent bronchoscopy for indications unrelated to P. jirovecii infection. Results: The PCR test was found to be highly reliable for diagnosing PCP, with high sensitivity and specificity (93.1%, 98.7%, respectively), a positive predictive value (PPV) of 96.4%, a negative predictive value (NPV) of 97.1%, a negative likelihood ratio of 0.71, and a positive likelihood ratio of 46.5. A Cq cutoff value of 21.89 was found to discriminate between probable PCP and definite PCP. In addition, patients with probable PCP had lower in-hospital mortality than those with definite PCP or no PCP. Conclusions: PCR offers a promising approach for diagnosing PCP in immunocompromised patients with negative respiratory microscopy results. While further research may be warranted, its use may allow for more timely treatment and potentially improved outcomes. Full article
(This article belongs to the Section Fungal Pathogenesis and Disease Control)
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