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Keywords = in situ instrumentation

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20 pages, 17646 KiB  
Article
An Observational Study of a Severe Squall Line Crossing Hong Kong on 15 March 2025 Based on Radar-Retrieved Three-Dimensional Winds and Flight Data
by Pak-wai Chan, Ying-wa Chan, Ping Cheung and Man-lok Chong
Appl. Sci. 2025, 15(15), 8562; https://doi.org/10.3390/app15158562 (registering DOI) - 1 Aug 2025
Abstract
The present paper reports for the first time the comparison of radar-derived eddy dissipation rate (EDR) and vertical velocity with measurements from six aircraft for an intense squall line crossing Hong Kong. The study objectives are three-fold: (i) to characterise the structural dynamics [...] Read more.
The present paper reports for the first time the comparison of radar-derived eddy dissipation rate (EDR) and vertical velocity with measurements from six aircraft for an intense squall line crossing Hong Kong. The study objectives are three-fold: (i) to characterise the structural dynamics of the intense squall line; (ii) to identify the dynamical change in EDR and vertical velocity during its eastward propagation across Hong Kong with a view to gaining insight into the intensity change of the squall line and the severity of its impact on aircraft flying near it; (iii) to carry out quantitative comparison of EDR and vertical velocity derived from remote sensing instruments, i.e., weather radars and in situ measurements from aircraft, so that the quality of the former dataset can be evaluated by the latter. During the passage of the squall line and taking reference of the radar reflectivity, vertical circulation and the subsiding flow at the rear, it appeared to be weakening in crossing over Hong Kong, possibly due to land friction by terrain and urban morphology. This is also consistent with the maximum gusts recorded by the dense network of ground-based anemometers in Hong Kong. However, from the EDR and the vertical velocity of the aircraft, the weakening trend was not very apparent, and rather severe turbulence was still recorded by the aircraft flying through the squall line into the region with stratiform precipitation when the latter reached the eastern coast of Hong Kong. In general, the radar-based and the aircraft-based EDRs are consistent with each other. The radar-retrieved maximum vertical velocity may be smaller in magnitude at times, possibly arising from the limited spatial and temporal resolutions of the aircraft data. The results of this paper could be a useful reference for the development of radar-based turbulence products for aviation applications. Full article
(This article belongs to the Section Environmental Sciences)
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18 pages, 4841 KiB  
Article
Nocturnal Convection Along a Trailing-End Cold Front: Insights from Ground-Based Remote Sensing Observations
by Kylie Hoffman, David D. Turner and Belay B. Demoz
Atmosphere 2025, 16(8), 926; https://doi.org/10.3390/atmos16080926 (registering DOI) - 30 Jul 2025
Viewed by 61
Abstract
This study examines a convergence event at the trailing end of a cold front observed in the United States’ Southern Great Plains region on 28 September 1997, using an array of in situ and remote sensing instruments. The event exhibited a structure with [...] Read more.
This study examines a convergence event at the trailing end of a cold front observed in the United States’ Southern Great Plains region on 28 September 1997, using an array of in situ and remote sensing instruments. The event exhibited a structure with elevated divergence near 3 km AGL and moisture transport over both warm and cold sectors. Data from Raman lidar (RL), Atmospheric Emitted Radiance Interferometer (AERI), and Radar Wind Profilers (RWP) were used to characterize vertical profiles of the event, revealing the presence of a narrow moist updraft, horizontal moisture advection, and cloud development ahead of the front. Convection parameters, Convective Available Potential Energy (CAPE) and Convective Inhibition (CIN), were derived from collocated AERI and RL. Regions of high CAPE were aligned with areas of high moisture, indicating that convection was more favorable at moist elevated levels than near the surface. RWP observations revealed vorticity structures consistent with existing theories. This study highlights the value of high-resolution, continuous profiling from remote sensors to resolve mesoscale processes and evaluate convection potential. The event underscores the role of elevated moisture and wind shear in modulating convection initiation along a trailing-end cold front boundary where mesoscale and synoptic forces interact. Full article
(This article belongs to the Section Meteorology)
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20 pages, 3857 KiB  
Review
Utility of Enabling Technologies in Spinal Deformity Surgery: Optimizing Surgical Planning and Intraoperative Execution to Maximize Patient Outcomes
by Nora C. Kim, Eli Johnson, Christopher DeWald, Nathan Lee and Timothy Y. Wang
J. Clin. Med. 2025, 14(15), 5377; https://doi.org/10.3390/jcm14155377 - 30 Jul 2025
Viewed by 169
Abstract
The management of adult spinal deformity (ASD) has evolved dramatically over the past century, transitioning from external bracing and in situ fusion to complex, technology-driven surgical interventions. This review traces the historical development of spinal deformity correction and highlights contemporary enabling technologies that [...] Read more.
The management of adult spinal deformity (ASD) has evolved dramatically over the past century, transitioning from external bracing and in situ fusion to complex, technology-driven surgical interventions. This review traces the historical development of spinal deformity correction and highlights contemporary enabling technologies that are redefining the surgical landscape. Advances in stereoradiographic imaging now allow for precise, low-dose three-dimensional assessment of spinopelvic parameters and segmental bone density, facilitating individualized surgical planning. Robotic assistance and intraoperative navigation improve the accuracy and safety of instrumentation, while patient-specific rods and interbody implants enhance biomechanical conformity and alignment precision. Machine learning and predictive modeling tools have emerged as valuable adjuncts for risk stratification, surgical planning, and outcome forecasting. Minimally invasive deformity correction strategies, including anterior column realignment and circumferential minimally invasive surgery (cMIS), have demonstrated equivalent clinical and radiographic outcomes to traditional open surgery with reduced perioperative morbidity in select patients. Despite these advancements, complications such as proximal junctional kyphosis and failure remain prevalent. Adjunctive strategies—including ligamentous tethering, modified proximal fixation, and vertebral cement augmentation—offer promising preventive potential. Collectively, these innovations signal a paradigm shift toward precision spine surgery, characterized by data-informed decision-making, individualized construct design, and improved patient-centered outcomes in spinal deformity care. Full article
(This article belongs to the Special Issue Clinical New Insights into Management of Scoliosis)
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16 pages, 1519 KiB  
Article
Rare Earth Element Detection and Quantification in Coal and Rock Mineral Matrices
by Chet R. Bhatt, Daniel A. Hartzler and Dustin L. McIntyre
Chemosensors 2025, 13(8), 270; https://doi.org/10.3390/chemosensors13080270 - 23 Jul 2025
Viewed by 512
Abstract
As global demand for rare earth elements (REEs) increases, maintaining the production and supply chain is critical. Technologies capable of being used in the field and in situ in the subsurface for rapid REE detection and quantification facilitates the efficient mining of known [...] Read more.
As global demand for rare earth elements (REEs) increases, maintaining the production and supply chain is critical. Technologies capable of being used in the field and in situ in the subsurface for rapid REE detection and quantification facilitates the efficient mining of known resources and exploration of new and unconventional resources. Laser-induced breakdown spectroscopy (LIBS) is a promising technique for rapid elemental analysis both in the laboratory and in the field. Multiple articles have been published evaluating LIBS for detection and quantification of REEs; however, REEs in their natural deposits have not been adequately studied. In this work, detection and quantification of two REEs, La and Nd, have been studied in both synthetic and natural mineral matrices at concentrations relevant to REE extraction. Measurements were performed on REE-containing rock and coal samples (natural and synthetic) utilizing different LIBS instruments and techniques, specifically a commercial benchtop instrument, a custom benchtop instrument (single- and double-pulse modes), and a custom LIBS probe currently being developed for in situ, subsurface, borehole wall detection and quantification of REEs. Plasma expansion, emission intensity, detection limits, and double-pulse signal enhancement were studied. The limits of detection (LOD) were found to be 10/14 ppm for La and 15/25 ppm for Nd in simulated coal/rock matrices in single-pulse mode. Signal enhancement of 3.5 to 6-fold was obtained with double-pulse mode as compared to single-pulse operation. Full article
(This article belongs to the Special Issue Application of Laser-Induced Breakdown Spectroscopy, 2nd Edition)
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29 pages, 4545 KiB  
Article
Characterization of Fresh and Aged Smoke Particles Simultaneously Observed with an ACTRIS Multi-Wavelength Raman Lidar in Potenza, Italy
by Benedetto De Rosa, Aldo Amodeo, Giuseppe D’Amico, Nikolaos Papagiannopoulos, Marco Rosoldi, Igor Veselovskii, Francesco Cardellicchio, Alfredo Falconieri, Pilar Gumà-Claramunt, Teresa Laurita, Michail Mytilinaios, Christina-Anna Papanikolaou, Davide Amodio, Canio Colangelo, Paolo Di Girolamo, Ilaria Gandolfi, Aldo Giunta, Emilio Lapenna, Fabrizio Marra, Rosa Maria Petracca Altieri, Ermann Ripepi, Donato Summa, Michele Volini, Alberto Arienzo and Lucia Monaadd Show full author list remove Hide full author list
Remote Sens. 2025, 17(15), 2538; https://doi.org/10.3390/rs17152538 - 22 Jul 2025
Viewed by 309
Abstract
This study describes a quite special and interesting atmospheric event characterized by the simultaneous presence of fresh and aged smoke layers. These peculiar conditions occurred on 16 July 2024 at the CNR-IMAA atmospheric observatory (CIAO) in Potenza (Italy), and represent an ideal case [...] Read more.
This study describes a quite special and interesting atmospheric event characterized by the simultaneous presence of fresh and aged smoke layers. These peculiar conditions occurred on 16 July 2024 at the CNR-IMAA atmospheric observatory (CIAO) in Potenza (Italy), and represent an ideal case for the evaluation of the impact of aging and transport mechanisms on both the optical and microphysical properties of biomass burning aerosol. The fresh smoke was originated by a local wildfire about 2 km from the measurement site and observed about one hour after its ignition. The other smoke layer was due to a wide wildfire occurring in Canada that, according to backward trajectory analysis, traveled for about 5–6 days before reaching the observatory. Synergetic use of lidar, ceilometer, radar, and microwave radiometer measurements revealed that particles from the local wildfire, located at about 3 km a.s.l., acted as condensation nuclei for cloud formation as a result of high humidity concentrations at this altitude range. Optical characterization of the fresh smoke layer based on Raman lidar measurements provided lidar ratio (LR) values of 46 ± 4 sr and 34 ± 3 sr, at 355 and 532 nm, respectively. The particle linear depolarization ratio (PLDR) at 532 nm was 0.067 ± 0.002, while backscatter-related Ångström exponent (AEβ) values were 1.21 ± 0.03, 1.23 ± 0.03, and 1.22 ± 0.04 in the spectral ranges of 355–532 nm, 355–1064 nm and 532–1064 nm, respectively. Microphysical inversion caused by these intensive optical parameters indicates a low contribution of black carbon (BC) and, despite their small size, particles remained outside the ultrafine range. Moreover, a combined use of CIAO remote sensing and in situ instrumentation shows that the particle properties are affected by humidity variations, thus suggesting a marked particle hygroscopic behavior. In contrast, the smoke plume from the Canadian wildfire traveled at altitudes between 6 and 8 km a.s.l., remaining unaffected by local humidity. Absorption in this case was higher, and, as observed in other aged wildfires, the LR at 532 nm was larger than that at 355 nm. Specifically, the LR at 355 nm was 55 ± 2 sr, while at 532 nm it was 82 ± 3 sr. The AEβ values were 1.77 ± 0.13 and 1.41 ± 0.07 at 355–532 nm and 532–1064 nm, respectively and the PLDR at 532 nm was 0.040 ± 0.003. Microphysical analysis suggests the presence of larger, yet much more absorbent particles. This analysis indicates that both optical and microphysical properties of smoke can vary significantly depending on its origin, persistence, and transport in the atmosphere. These factors that must be carefully incorporated into future climate models, especially considering the frequent occurrences of fire events worldwide. Full article
(This article belongs to the Section Atmospheric Remote Sensing)
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17 pages, 3477 KiB  
Article
Development of Polydopamine–Chitosan-Modified Electrochemical Immunosensor for Sensitive Detection of 7,12-Dimethylbenzo[a]anthracene in Seawater
by Huili Hao, Chengjun Qiu, Wei Qu, Yuan Zhuang, Zizi Zhao, Haozheng Liu, Wenhao Wang, Jiahua Su and Wei Tao
Chemosensors 2025, 13(7), 263; https://doi.org/10.3390/chemosensors13070263 - 20 Jul 2025
Viewed by 289
Abstract
7,12-Dimethylbenzo[a]anthracene (DMBA-7,12), a highly toxic and environmentally persistent polycyclic aromatic hydrocarbon (PAH), poses significant threats to marine biodiversity and human health due to its bioaccumulation through the food chain. Conventional chromatographic methods, while achieving comparable detection limits, are hindered by the need for [...] Read more.
7,12-Dimethylbenzo[a]anthracene (DMBA-7,12), a highly toxic and environmentally persistent polycyclic aromatic hydrocarbon (PAH), poses significant threats to marine biodiversity and human health due to its bioaccumulation through the food chain. Conventional chromatographic methods, while achieving comparable detection limits, are hindered by the need for expensive instrumentation and prolonged analysis times, rendering them unsuitable for rapid on-site monitoring of DMBA-7,12 in marine environments. Therefore, the development of novel, efficient detection techniques is imperative. In this study, we have successfully developed an electrochemical immunosensor based on a polydopamine (PDA)–chitosan (CTs) composite interface to overcome existing technical limitations. PDA provides a robust scaffold for antibody immobilization due to its strong adhesive properties, while CTs enhances signal amplification and biocompatibility. The synergistic integration of these materials combines the high efficiency of electrochemical detection with the specificity of antigen–antibody recognition, enabling precise qualitative and quantitative analysis of the target analyte through monitoring changes in the electrochemical properties at the electrode surface. By systematically optimizing key experimental parameters, including buffer pH, probe concentration, and antibody loading, we have constructed the first electrochemical immunosensor for detecting DMBA-7,12 in seawater. The sensor achieved a detection limit as low as 0.42 ng/mL. In spiked seawater samples, the recovery rates ranged from 95.53% to 99.44%, with relative standard deviations (RSDs) ≤ 4.6%, demonstrating excellent accuracy and reliability. This innovative approach offers a cost-effective and efficient solution for the in situ rapid monitoring of trace carcinogens in marine environments, potentially advancing the field of marine pollutant detection technologies. Full article
(This article belongs to the Section Electrochemical Devices and Sensors)
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15 pages, 3200 KiB  
Article
Stress Compensation in TiO2/SiO2 Optical Coatings by Manipulating the Thickness Modulation Ratio
by Bo Wang, Taiqi Wu, Weidong Gao, Gang Hu and Changjun Wang
Coatings 2025, 15(7), 848; https://doi.org/10.3390/coatings15070848 - 19 Jul 2025
Viewed by 303
Abstract
With the rapid advancement of high-precision optical systems, increasingly stringent demands are imposed on the surface figure accuracy of optical components. The magnitude of residual stress in multilayer films directly influences the post-coating surface figure stability of these components, making the control of [...] Read more.
With the rapid advancement of high-precision optical systems, increasingly stringent demands are imposed on the surface figure accuracy of optical components. The magnitude of residual stress in multilayer films directly influences the post-coating surface figure stability of these components, making the control of multilayer film stress a critical factor in enhancing optical surface figure accuracy. In this study, which addresses the process constraints and substrate damage risks associated with conventional annealing-based stress compensation for large-aperture optical components, we introduce an active stress engineering strategy rooted in in situ deposition process optimization. By systematically tailoring film deposition parameters and adjusting the thickness modulation ratio of TiO2 and SiO2, we achieve dynamic compensation of residual stress in multilayer structures. This approach demonstrates broad applicability across diverse optical coatings, where it effectively mitigates stress-induced surface distortions. Unlike annealing methods, this intrinsic stress polarity manipulation strategy obviates the need for high-temperature post-processing, eliminating risks of material decomposition or substrate degradation. By enabling precise nanoscale stress regulation in large-aperture films through controlled process parameters, it provides essential technical support for manufacturing ultra-precision optical devices, such as next-generation laser systems and space-based stress wave detection instruments, where minimal stress-induced deformation is paramount to functional performance. Full article
(This article belongs to the Section Thin Films)
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12 pages, 2650 KiB  
Article
Calibration and Detection of Phosphine Using a Corrosion-Resistant Ion Trap Mass Spectrometer
by Dragan Nikolić and Xu Zhang
Biophysica 2025, 5(3), 28; https://doi.org/10.3390/biophysica5030028 - 17 Jul 2025
Viewed by 186
Abstract
We present a corrosion-resistant quadrupole ion trap mass spectrometer (QIT-MS) designed for trace detection of volatiles in sulfuric acid aerosols, with a specific focus on phosphine (PH3). Here, we detail the gas calibration methodology using permeation tube technology for generating certified [...] Read more.
We present a corrosion-resistant quadrupole ion trap mass spectrometer (QIT-MS) designed for trace detection of volatiles in sulfuric acid aerosols, with a specific focus on phosphine (PH3). Here, we detail the gas calibration methodology using permeation tube technology for generating certified ppb-level PH3/H2S/CO2 mixtures, and report results from mass spectra with sufficient resolution to distinguish isotopic envelopes that validate the detection of PH3 at a concentration of 62 ppb. Fragmentation patterns for PH3 and H2S agree with NIST data, and signal-to-noise performance confirms ppb sensitivity over 2.6 h acquisition periods. We further assess spectral interferences from oxygen isotopes and propose a detection scheme based on isolated phosphorus ions (P+) to enable specific and interference-resistant identification of PH3 and other reduced phosphorus species of astrobiological interest in Venus-like environments. This work extends the capabilities of QIT-MS for trace gas analysis in chemically aggressive atmospheric conditions. Full article
(This article belongs to the Special Issue Mass Spectrometry Applications in Biology Research)
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10 pages, 2486 KiB  
Article
Performance of Miniature Carbon Nanotube Field Emission Pressure Sensor for X-Ray Source Applications
by Huizi Zhou, Wenguang Peng, Weijun Huang, Nini Ye and Changkun Dong
Micromachines 2025, 16(7), 817; https://doi.org/10.3390/mi16070817 - 17 Jul 2025
Viewed by 322
Abstract
There is a lack of an effective approach to measure vacuum conditions inside sealed vacuum electronic devices (VEDs) and other small-space vacuum instruments. In this study, the application performance of an innovative low-pressure gas sensor based on the emission enhancements of multi-walled carbon [...] Read more.
There is a lack of an effective approach to measure vacuum conditions inside sealed vacuum electronic devices (VEDs) and other small-space vacuum instruments. In this study, the application performance of an innovative low-pressure gas sensor based on the emission enhancements of multi-walled carbon nanotube (MWCNT) field emitters was investigated, and the in situ vacuum performance of X-ray tubes was studied for the advantages of miniature dimension and having low power consumption, extremely low outgassing, and low thermal disturbance compared to conventional ionization gauges. The MWCNT emitters with high crystallinity presented good pressure sensing performance for nitrogen, hydrogen, and an air mixture in the range of 10−7 to 10−3 Pa. The miniature MWCNT sensor is able to work and remain stable with high-temperature baking, important for VED applications. The sensor monitored the in situ pressures of the sealed X-ray tubes successfully with high-power operations and a long-term storage of over two years. The investigation showed that the vacuum of the sealed X-ray tube is typical at a low 10−4 Pa level, and pre-sealing degassing treatments are able to make the X-ray tube work under high vacuum levels with less outgassing and keep a stable high vacuum for a long period of time. Full article
(This article belongs to the Section D:Materials and Processing)
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19 pages, 3993 KiB  
Article
Optical Monitoring of Particulate Matter: Calibration Approach, Seasonal and Diurnal Dependency, and Impact of Meteorological Vectors
by Salma Zaim, Bouchra Laarabi, Hajar Chamali, Abdelouahed Dahrouch, Asmae Arbaoui, Khalid Rahmani, Abdelfettah Barhdadi and Mouhaydine Tlemçani
Environments 2025, 12(7), 244; https://doi.org/10.3390/environments12070244 - 16 Jul 2025
Viewed by 476
Abstract
The worldwide air pollution situation reveals significant environmental challenges. In addition to being a major contributor to the deterioration of air quality, particulate matter (PM) is also an important factor affecting the performance of solar energy systems given its ability to decrease light [...] Read more.
The worldwide air pollution situation reveals significant environmental challenges. In addition to being a major contributor to the deterioration of air quality, particulate matter (PM) is also an important factor affecting the performance of solar energy systems given its ability to decrease light transmission to solar panels. As part of our research, the present investigation involves monitoring concentrations of PM using a high-performance optical instrument, the in situ calibration protocol of which is described in detail. For the city of Rabat, observations revealed significant variations in concentrations between day and night, with peaks observed around 8 p.m. correlating with high relative humidity and low wind speeds, and the highest levels recorded in February with a monthly average value reaching 75 µm/m3. In addition, an experimental protocol was set up for an analysis of the elemental composition of particles in the same city using SEM/EDS, providing a better understanding of their morphology. To assess the impact of meteorological variables on PM concentrations in two distinct climatic environments, a database from the city of Marrakech for the year 2024 was utilized. Overall, the distribution of PM values during this period did not fluctuate significantly, with a monthly average value not exceeding 45 µm/m3. The random forest method identified the most influential variables on these concentrations, highlighting the strong influence of the type of environment. The findings provide crucial information for the modeling of solar installations’ soiling and for improving understanding of local air quality. Full article
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24 pages, 3601 KiB  
Article
Laser-Induced Breakdown Spectroscopy Quantitative Analysis Using a Bayesian Optimization-Based Tunable Softplus Backpropagation Neural Network
by Xuesen Xu, Shijia Luo, Xuchen Zhang, Weiming Xu, Rong Shu, Jianyu Wang, Xiangfeng Liu, Ping Li, Changheng Li and Luning Li
Remote Sens. 2025, 17(14), 2457; https://doi.org/10.3390/rs17142457 - 16 Jul 2025
Viewed by 285
Abstract
Laser-induced breakdown spectroscopy (LIBS) has played a critical role in Mars exploration missions, substantially contributing to the geochemical analysis of Martian surface substances. However, the complex nonlinearity of LIBS processes can considerably limit the quantification accuracy of conventional LIBS chemometric methods. Hence chemometrics [...] Read more.
Laser-induced breakdown spectroscopy (LIBS) has played a critical role in Mars exploration missions, substantially contributing to the geochemical analysis of Martian surface substances. However, the complex nonlinearity of LIBS processes can considerably limit the quantification accuracy of conventional LIBS chemometric methods. Hence chemometrics based on artificial neural network (ANN) algorithms have become increasingly popular in LIBS analysis due to their extraordinary ability in nonlinear feature modeling. The hidden layer activation functions are key to ANN model performance, yet common activation functions usually suffer from problems such as gradient vanishing (e.g., Sigmoid and Tanh) and dying neurons (e.g., ReLU). In this study, we propose a novel LIBS quantification method, named the Bayesian optimization-based tunable Softplus backpropagation neural network (BOTS-BPNN). Based on a dataset comprising 1800 LIBS spectra collected by a laboratory duplicate of the MarSCoDe instrument onboard the Zhurong Mars rover, we have revealed that a BPNN model adopting a tunable Softplus activation function can achieve higher prediction accuracy than BPNN models adopting other common activation functions if the tunable Softplus parameter β is properly selected. Moreover, the way to find the proper β value has also been investigated. We demonstrate that the Bayesian optimization method surpasses the traditional grid search method regarding both performance and efficiency. The BOTS-BPNN model also shows superior performance over other common machine learning models like random forest (RF). This work indicates the potential of BOTS-BPNN as an effective chemometric method for analyzing Mars in situ LIBS data and sheds light on the use of chemometrics for data analysis in future planetary explorations. Full article
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14 pages, 16727 KiB  
Article
Well Begun Is Half Done: The Impact of Pre-Processing in MALDI Mass Spectrometry Imaging Analysis Applied to a Case Study of Thyroid Nodules
by Giulia Capitoli, Kirsten C. J. van Abeelen, Isabella Piga, Vincenzo L’Imperio, Marco S. Nobile, Daniela Besozzi and Stefania Galimberti
Stats 2025, 8(3), 57; https://doi.org/10.3390/stats8030057 - 10 Jul 2025
Cited by 1 | Viewed by 231
Abstract
The discovery of proteomic biomarkers in cancer research can be effectively performed in situ by exploiting Matrix-Assisted Laser Desorption Ionization (MALDI) Mass Spectrometry Imaging (MSI). However, due to experimental limitations, the spectra extracted by MALDI-MSI can be noisy, so pre-processing steps are generally [...] Read more.
The discovery of proteomic biomarkers in cancer research can be effectively performed in situ by exploiting Matrix-Assisted Laser Desorption Ionization (MALDI) Mass Spectrometry Imaging (MSI). However, due to experimental limitations, the spectra extracted by MALDI-MSI can be noisy, so pre-processing steps are generally needed to reduce the instrumental and analytical variability. Thus far, the importance and the effect of standard pre-processing methods, as well as their combinations and parameter settings, have not been extensively investigated in proteomics applications. In this work, we present a systematic study of 15 combinations of pre-processing steps—including baseline, smoothing, normalization, and peak alignment—for a real-data classification task on MALDI-MSI data measured from fine-needle aspirates biopsies of thyroid nodules. The influence of each combination was assessed by analyzing the feature extraction, pixel-by-pixel classification probabilities, and LASSO classification performance. Our results highlight the necessity of fine-tuning a pre-processing pipeline, especially for the reliable transfer of molecular diagnostic signatures in clinical practice. We outline some recommendations on the selection of pre-processing steps, together with filter levels and alignment methods, according to the mass-to-charge range and heterogeneity of data. Full article
(This article belongs to the Section Applied Statistics and Machine Learning Methods)
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19 pages, 4441 KiB  
Article
Short-Term Probiotic Colonization Alters Molecular Dynamics of 3D Oral Biofilms
by Nadeeka S. Udawatte, Chun Liu, Reuben Staples, Pingping Han, Purnima S. Kumar, Thiruma V. Arumugam, Sašo Ivanovski and Chaminda J. Seneviratne
Int. J. Mol. Sci. 2025, 26(13), 6403; https://doi.org/10.3390/ijms26136403 - 3 Jul 2025
Viewed by 489
Abstract
Three-dimensional (3D) scaffold systems have proven instrumental in advancing our understanding of polymicrobial biofilm dynamics and probiotic interactions within the oral environment. Among oral probiotics, Streptococcus salivarius K12 (Ssk12) has shown considerable promise in modulating microbial homeostasis; however, its long-term therapeutic [...] Read more.
Three-dimensional (3D) scaffold systems have proven instrumental in advancing our understanding of polymicrobial biofilm dynamics and probiotic interactions within the oral environment. Among oral probiotics, Streptococcus salivarius K12 (Ssk12) has shown considerable promise in modulating microbial homeostasis; however, its long-term therapeutic benefits are contingent upon successful and sustained colonization of the oral mucosa. Despite its clinical relevance, the molecular mechanisms underlying the adhesion, persistence, and integration of Ssk12 into the native oral microbiome/biofilm remain inadequately characterized. In this pilot study, we explored the temporal colonization dynamics of Ssk12 and its impact on the structure and functional profiles of salivary-derived biofilms cultivated on melt-electrowritten poly(ε-caprolactone) (MEW-mPCL) scaffolds, which emulate the native oral niche. Colonization was monitored via fluorescence in situ hybridization (smFISH), confocal microscopy, and RT-qPCR, while shifts in community composition and function were assessed using 16S rRNA sequencing and meta-transcriptomics. A single administration of Ssk12 exhibited transient colonization lasting up to 7 days, with detectable presence diminishing by day 10. This was accompanied by short-term increases in Lactobacillus and Bifidobacterium populations. Functional analyses revealed increased transcriptional signatures linked to oxidative stress resistance and metabolic adaptation. These findings suggest that even short-term probiotic colonization induces significant functional changes, underscoring the need for strategies to enhance probiotic persistence. Full article
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23 pages, 5570 KiB  
Article
Evaluation of Coastal Sediment Dynamics Utilizing Natural Radionuclides and Validated In-Situ Radioanalytical Methods at Legrena Beach, Attica Region, Greece
by Christos Tsabaris, Alicia Tejera, Ronald L. Koomans, Damien Pham van Bang, Abdelkader Hammouti, Dimitra Malliouri, Vasilios Kapsimalis, Pablo Martel, Ana C. Arriola-Velásquez, Stylianos Alexakis, Effrosyni G. Androulakaki, Georgios Eleftheriou, Kennedy Kilel, Christos Maramathas, Dionisis L. Patiris and Hannah Affum
J. Mar. Sci. Eng. 2025, 13(7), 1229; https://doi.org/10.3390/jmse13071229 - 26 Jun 2025
Viewed by 498
Abstract
This study was realized in the frame of an IAEA Coordinated Research Project for the evaluation of sediment dynamics, applying in-situ radiometric methods accompanied with a theoretical model. The in-situ methods were validated using lab-based high-resolution gamma-ray spectrometry. Sediment dynamics assessments were performed [...] Read more.
This study was realized in the frame of an IAEA Coordinated Research Project for the evaluation of sediment dynamics, applying in-situ radiometric methods accompanied with a theoretical model. The in-situ methods were validated using lab-based high-resolution gamma-ray spectrometry. Sediment dynamics assessments were performed based on the measured and mapped activity concentrations of specific 238U progenies (214Bi or 214Pb), 232Th progenies (208Tl and 228Ac), and 40K along the shoreline of the beach. The maps of the activity concentrations of natural radionuclides were produced rapidly using software tools (R language v4.5). The sediment dynamics of the studied area were also investigated through numerical simulations, applying an open source model considering land–sea interactions and meteorological conditions and the corresponding sediment processes. The assessments, which were conducted utilizing the detailed data from the natural radioactivity maps, were validated by the simulation results, since both were found to be in agreement. Generally, it was confirmed that the distribution of radionuclides reflects the selective transport processes of sediments, which are related to the corresponding processes that occur in the study area. Legrena Beach in Attica, Greece, served as a pilot area for the comparative analysis of methods and demonstration of their relevance and applicability for studying coastal processes. Full article
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19 pages, 2201 KiB  
Article
Acoustic Emission for Structural Monitoring of Historical Masonry: An In-Field Application
by Luciana Di Gennaro, Giovanni Loreto, Giorgio Frunzio, Gianvittorio Rizzano and Claudio Guarnaccia
Appl. Sci. 2025, 15(13), 7111; https://doi.org/10.3390/app15137111 - 24 Jun 2025
Viewed by 269
Abstract
Acoustic Emission is a non-invasive technique with potential applications in Structural Health Monitoring (SHM), particularly for assessing historic masonry structures. However, its use in this field is complex due to the heterogeneous nature of masonry, where variations in density, mortar joints, and internal [...] Read more.
Acoustic Emission is a non-invasive technique with potential applications in Structural Health Monitoring (SHM), particularly for assessing historic masonry structures. However, its use in this field is complex due to the heterogeneous nature of masonry, where variations in density, mortar joints, and internal discontinuities influence signal propagation, leading to attenuation and distortion that complicate damage detection and localization. Nonetheless, AE can offer qualitative insights into damage initiation and progression, serving as a complementary approach to traditional monitoring methods. This study explores the feasibility of AE through an in-field test conducted on the historic Santa Maria delle Grazie complex, assessing its ability to capture qualitative indicators of structural behaviour. By integrating AE results with data from conventional monitoring instruments, a comprehensive interpretation of the load test outcomes was developed despite the challenges posed by the irregularities of ancient masonry. The findings contribute to the ongoing evaluation of AE as a diagnostic tool and highlight its potential role in heritage conservation strategies. Full article
(This article belongs to the Section Acoustics and Vibrations)
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