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Article

Calibration and Detection of Phosphine Using a Corrosion-Resistant Ion Trap Mass Spectrometer

1
Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109, USA
2
Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA
*
Author to whom correspondence should be addressed.
Biophysica 2025, 5(3), 28; https://doi.org/10.3390/biophysica5030028
Submission received: 12 June 2025 / Revised: 12 July 2025 / Accepted: 15 July 2025 / Published: 17 July 2025
(This article belongs to the Special Issue Mass Spectrometry Applications in Biology Research)

Abstract

We present a corrosion-resistant quadrupole ion trap mass spectrometer (QIT-MS) designed for trace detection of volatiles in sulfuric acid aerosols, with a specific focus on phosphine (PH3). Here, we detail the gas calibration methodology using permeation tube technology for generating certified ppb-level PH3/H2S/CO2 mixtures, and report results from mass spectra with sufficient resolution to distinguish isotopic envelopes that validate the detection of PH3 at a concentration of 62 ppb. Fragmentation patterns for PH3 and H2S agree with NIST data, and signal-to-noise performance confirms ppb sensitivity over 2.6 h acquisition periods. We further assess spectral interferences from oxygen isotopes and propose a detection scheme based on isolated phosphorus ions (P+) to enable specific and interference-resistant identification of PH3 and other reduced phosphorus species of astrobiological interest in Venus-like environments. This work extends the capabilities of QIT-MS for trace gas analysis in chemically aggressive atmospheric conditions.

1. Introduction

The reported detection of phosphine (PH3) in the cloud decks of Venus has ignited a vigorous scientific debate due to its potential implications for life beyond Earth. Observations by the James Clerk Maxwell Telescope (JCMT) and the Atacama Large Millimeter/submillimeter Array (ALMA) suggested the presence of ~20 ppb of PH3 near 55 km altitude [1,2]. This was a surprising claim: Venus’s highly oxidizing atmosphere should rapidly destroy reduced species such as PH3, and no conventional thermodynamic or photochemical processes have been shown to produce it efficiently under such conditions. On Earth, PH3 is predominantly associated with anaerobic microbial ecosystems, which has led to its proposal as a potential biosignature gas. The suggestion that PH3 might indicate microbial life in the temperate cloud layers of Venus generated wide interest in the astrobiology community—but also immediate and intense scrutiny from planetary scientists [3,4].
Subsequent re-analyses have called the original detection into question, attributing the signal to possible misidentification or interference from mesospheric SO2 [5,6]. Other independent studies, including re-examinations of archival Pioneer Venus mass spectrometry data, have hinted at the presence of disequilibrium gases such as PH3 and NH3 in the middle cloud region [7], keeping the controversy unresolved. While the biological interpretation remains speculative, the persistence of the PH3 signal highlights a significant knowledge gap in our understanding of phosphorus chemistry and the possible sources and sinks of reduced phosphorus species in the Venusian atmosphere.
Remote sensing of PH3 using millimeter- and submillimeter-wave spectroscopy has played a central role in the original detection claims. The initial reports relied on JCMT and ALMA observations of the 1–0 rotational transition of PH3 at 266.94 GHz, a microwave band where Venus’s cloud deck is semi-transparent [1,2]. However, the reliability of this method has been a subject of extensive debate. The high thermal background, strong atmospheric opacity, and overlapping pressure-broadened absorption features—particularly from SO2—make microwave retrievals from Venus’s atmosphere exceptionally challenging. Baseline calibration errors, side-lobe contamination, and uncertainties in radiative transfer modeling have all been cited as possible sources of false positives. Additionally, laboratory spectral data for PH3 at high temperatures and pressures remain sparse, limiting the ability to unambiguously interpret remote observations under Venus-like conditions [4,5,6]. These limitations underscore the need for complementary in situ detection techniques, such as mass spectrometry, which can directly sample and discriminate among isobaric species in the complex chemical environment of the Venusian cloud layer.
An increasingly compelling alternative to the biogenic hypothesis is a geochemical one: that PH3 may originate from volcanic activity. Venus is a volcanically dominated world, with over 75% of its surface covered by basaltic plains and domes [8,9]. Recent analyses of thermal emissivity and structural data have revealed numerous active or recently active volcanic regions [10,11], and its internal dynamics are thought to be governed by mantle plume activity beneath a stagnant lithospheric lid [12]. Volcanic plumes could deliver reduced phosphorus compounds—such as metal phosphides (e.g., Fe2P, Ca3P2)—from the deep interior to the surface. These could subsequently oxidize to form intermediates like P4O6 or PO, which may then be reduced to PH3 through reactions involving abundant atmospheric reductants such as H2, CO, H2S, OCS, and Sx [13,14,15].
PH3’s lifetime and distribution in the Venusian atmosphere are strongly altitude-dependent. In the upper haze layers (>70 km), intense UV radiation and reactive oxygen species rapidly photolyze PH3, limiting its lifetime to less than a second. In contrast, the lower cloud and haze region (~45 km) is UV-shielded and chemically reducing, allowing PH3 to persist for years—provided a continuous source replenishes it. Destruction in this region is dominated by reactions with chlorine radicals derived from photodissociation of HCl [14,15,16], though model estimates of Cl concentrations differ by up to five orders of magnitude. These uncertainties severely constrain our ability to model PH3 abundance and lifetime accurately.
Figure 1 summarizes the proposed formation and destruction pathways of PH3 and its precursors across Venus’s vertical atmospheric structure. It highlights potential volcanic inputs, intermediate redox species, reduction mechanisms, and altitude-dependent loss processes, offering a conceptual framework for evaluating both biotic and abiotic origins. Given these chemical and observational complexities, in situ measurements are essential to confirm the presence of PH3 and to constrain its formation mechanisms. These measurements must be performed in the chemically aggressive environment of Venus’s lower atmosphere, where instruments are exposed to concentrated sulfuric acid aerosols, elevated pressures, and high temperatures—all of which exceed the operational tolerance of most conventional mass spectrometers.
To meet these challenges, we present the calibration and performance of a corrosion-resistant hyperbolic quadrupole ion trap mass spectrometer (QIT-MS) developed at the Jet Propulsion Laboratory and optimized for electron impact (EI) ionization at 70 eV.
This compact and robust instrument is engineered for operation in >98% H2SO4 vapor [17] and offers high mass resolution sufficient to distinguish PH3 from isobaric species like H2S. It is capable of detecting PH3 and its likely precursors (e.g., P4O6, PO) at trace concentrations. Ions are formed within the trap volume by intersecting a thermionically emitted electron beam with the neutral analyte gas. The trap consists of a ring electrode with hyperbolic geometry and two symmetrically placed hyperbolic endcap electrodes. An oscillating radiofrequency (RF) voltage in the 0.8–1.2 MHz range is applied to the ring electrode to confine ions in three dimensions. During operation, the system maintains a background pressure of ~10−7 Torr, with elevated pressures (~10−6 to 10−5 Torr) during sample introduction. Under these conditions, the practical upper m/z detection limit of the QIT-MS is approximately 300 u/e, determined by the fixed trap geometry and the tunable range of RF amplitude and frequency. Mass-selective ion ejection is achieved by ramping the RF amplitude, and ions are detected by a channeltron electron multiplier mounted behind one of the endcaps. The system supports both full mass scans and secular resonance excitation modes for ion isolation and enrichment [17]. This configuration provides high stability, compact form factor, and resilience in corrosive gas environments—key attributes for future planetary missions involving trace volatile detection.
The results presented here establish the QIT-MS’s readiness for future planetary missions and highlight its potential to resolve one of the most compelling atmospheric mysteries in planetary science—whether the phosphine detected in Venus’s atmosphere originates from biological activity, volcanic processes, or an as-yet unidentified mechanism. This work aligns with and supports several priority scientific questions outlined in the 2023–2032 Decadal Strategy for Planetary Science and Astrobiology (DSPS) [18], including the following: Q7.1c—How are condensable and disequilibrium species distributed and transported in planetary atmospheres and interiors?; Q10.5a—What are the inventories, forms, and distributions of life-supporting elements on planetary bodies?; and Q11.2—Biosignature potential. By enabling high-resolution, in situ detection of volatile and reactive phosphorus species under Venus-like conditions, this study contributes directly to advancing these strategic objectives.

2. Materials and Methods

The generation of calibrated trace gas mixtures of phosphine (PH3) and hydrogen sulfide (H2S) in a carbon dioxide (CO2) matrix was performed using a modular gas standard generation system (FlexStream™, KIN-TEK Analytical, Inc. La Marque, TX, USA), as illustrated schematically in Figure 2. This system employs Trace Source™ permeation tubes, certified for CO2 carrier gas, to deliver gas mixtures with high reproducibility and nominal uncertainties of ±2% at sub-ppm to ppb levels. The configuration includes two key components: a Base Module (BM) and an auxiliary Permeation Module (PM). The BM contains a PH3 permeation tube and integrates a high-precision mass flow controller (±1.5% full-scale accuracy) and an oven with PID-based temperature control (stability of ±0.01 °C). CO2 carrier gas is introduced through passivated gas lines into the BM, where it passes over the PH3 permeation tube heated to 30 °C, producing a PH3/CO2 mixture. The resulting PH3 concentration is modulated by adjusting the CO2 flow rate.
A portion of the regulated CO2 stream is simultaneously routed from the BM into the PM, which houses a separate H2S permeation tube. The PM maintains the same temperature setpoint (30 °C) for H2S generation. As the CO2 flows through the PM, it picks up trace H2S vapor to form an H2S/CO2 stream. At the PM output, this stream merges with the upstream PH3/CO2 mixture to yield the final ternary PH3/H2S/CO2 mixture.
Downstream of the PM, the gas mixture enters a passivated stainless steel Swagelok™-based manifold system (Figure 2, right side) designed for pressure regulation, mixing stabilization, and sample collection. A precision needle valve and a back pressure regulator (nominally set to ~16 psia) provide fine control over mixture pressure and delivery. Multiple isolation valves (Valves #1–7) and Swagelok tees direct the flow toward a pre-evacuated stainless steel lecture bottle for gas collection or to a scrubber system for safe venting of excess gas. A vacuum pump (accessed via Valve #6) enables evacuation of the collection line and lecture bottle prior to sampling. System pressure is monitored via an in-line mechanical gauge (connected via Valve #7).
Two types of SilcoNert®®-passivated stainless steel sampling cylinders were used for gas collection and storage, selected based on sample volume requirements and concentration targets. The first is a 1 L dual-ended DOT-rated cylinder (2022), constructed from 316 stainless steel and internally coated with SilcoNert®® 2000 to ensure chemical inertness toward reactive trace gases such as PH3 and H2S. It features 1/4” compression-thread inlet needle valves on both ends, with one end incorporating a combination pressure relief/needle valve rated at 1900 psig. Lanyard-secured endcaps protect the valves during transport, and the unit is fully assembled, helium leak-tested, and field-ready.
The second vessel is a 2.25 L dual-valved DOT-3A1800 cylinder (2022), originally configured with a dip tube for liquid CO2 but modified for gas-phase applications by removing the dip tube. This larger-capacity cylinder is also SilcoNert®®-passivated, equipped with 1/4” compression-thread inlets, a 1900 psig combination pressure relief/needle valve, and brass lanyard endcaps. The increased internal volume of the 2.25 L cylinder enables storage of more diluted PH3/H2S/CO2 mixtures, which is particularly advantageous when targeting ultra-trace concentrations or minimizing adsorption losses over extended holding times. Both configurations meet DOT transport regulations and are optimized for preserving reactive gas integrity during sampling and transfer.
All operational parameters—including flow rates, oven temperatures, and module status—are monitored and controlled through the FlexLink™ software interface, which communicates with the FlexStream hardware over a standard RS-232 serial link. Ethernet-based control is also supported, allowing the system to be accessed remotely over a local intranet or the internet. FlexLink™ is implemented in National Instruments LabView®®, but it runs as a standalone executable and does not require LabView®® to be installed on the host computer. Through the FlexLink™ interface, users can set carrier gas flow rates, oven temperatures, and module configurations, and monitor system status in real time. This configuration allows for consistent and reproducible generation of trace gas mixtures in CO2, with flexible control over individual gas concentrations, making it well suited for calibration of gas sensors or validation of analytical instruments in environmental and planetary science applications.
The concentrations of PH3 and H2S in the resulting gas mixture are determined by the calibrated CO2 flow rates and the permeation rates of the corresponding tubes. Each permeation tube is factory-calibrated via gravimetric weight loss measurements, yielding a certified emission rate at a specified reference temperature. Under steady thermal conditions (30 °C in this study), the emitted mass of each analyte is constant, and the final concentration is governed primarily by the carrier gas flow rate. For the present setup, KIN-TEK provides empirical formulas correlating flow rate to target gas concentration. Table 1 summarizes the PH3 and H2S concentrations obtained at various flow rates. For the experiments described here, a CO2 flow rate of 500 standard cubic centimeters per minute (sccm) was used, yielding concentrations of approximately 62 ppb for PH3 and 566 ppb for H2S in the CO2 matrix stored in 1 L lecture bottle.
The electron impact ionization source used in this study is based on a commercially available emitter assembly (Model ES-535, Kimball Physics Inc., Wilton, CT, USA), specifically selected for its compatibility with corrosive environments and low-pressure operation [17]. The filament consists of an yttrium oxide-coated iridium disk, which provides stable thermionic emission over extended periods. The disk is heated by conduction from an iridium hairpin element, enabling controlled thermal emission without direct resistive heating of the disk. The entire emitter assembly is mounted on an alumina ceramic insulator base, ensuring high electrical isolation and thermal stability during operation. In this configuration, the electron gun was operated at a filament current of 1.55 A, corresponding to an estimated filament temperature of ~1300 K and an emission current of ~4 µA under the operating pressure of 7.1 × 10−7 Torr. For high-sensitivity modes, the filament current can be increased up to 1.9 A, corresponding to ~1900 K and >10 mA emission current, enabling enhanced ion production. This robust construction supports stable and repeatable electron impact ionization, even in the presence of reactive gas species such as PH3 and H2S, and ensures reliable long-duration operation in preparation for future planetary in situ deployment.

3. Results

In our previous work (Figure 5b of [17]), we illustrated the Gas Inlet (GI) system used to elute the PH3 (62 ppb)/H2S (566 ppb)/CO2 (ballast) gas mixture from the lecture bottle into the QIT-MS sensor. Using the roughing pump (IDP-3) attached to the scrubber, GI lines were purged several times and pumped out to vacuum levels (<10−3 Torr) before the calibrated gas mixtures were leaked from the lecture bottle into the QIT-MS sensor. Mass spectra in Figure 1 were obtained using the high-resolution mode (detailed in Figure 3a of [17]). The electron gun filament current was set to 1.55 A such that the total number of fragment ions recorded over 2.6 h due to trace species was 30,047 (27,062 from H2S and 2985 from PH3), yielding the detection sensitivity of 7.2 × 1012 cps/Torr. Using Kimball Physics documentation, the electron gun filament temperature at this setting was ~1300 K, and the electron emission current was ~4 μA.
Figure 3 insets (a), (b), and (c) show mass spectra co-added during 5, 10, and 30 min of measurements, respectively. On the other hand, Figure 3d is the calibrated mass spectrum accumulated during 2.6 h, with labels for each peak identified in this study. Calibration procedure [19] of accumulated mass spectra accounts for slight changes in the slope of the ring electrode’s linear ramp voltage drive and drift of recorded mass spectra by up to 10 mass channels over 24 h of continuous measurements. These slight off-resonance conditions are due to the daily variations in operating conditions of the supporting laboratory electronics. They are routinely corrected on the firmware level during the r.f. voltage drive generation or subsequent data analysis. When slightly drifting mass spectra are being co-added over a long period of time, each resultant peak in the summed mass spectrum will be additionally broadened by at most 10 channels. This additional broadening is accounted for in the post-processing of the recorded data by applying the mass spectrum alignment procedure [19]. For each co-added individual mass spectra, we fit the positions of four prominent peaks (mass calibration) and slide the whole spectrum by a few mass channels to maximize the overlap with previously post-processed data. The applied mass calibration procedure is linear, preserves the mutual separation of peaks in the aligned mass spectrum, improves the mass resolution of each mass peak, and aids ion fragment recognition. Each identified mass peak shown in Figure 2 is analyzed by corresponding K-profile fit [19] and is characterized in Table 2. The area under the mass peak, A, is corrected for the local background noise, N, taken here as ten counts per channel. The signal-to-noise ratio, Sp/N, is obtained by dividing the maximum peak intensity, Sp, by the local background noise level. The accumulated area A under each identified peak determines the fragment ion abundance, and its counting precision is calculated as 100%/√A. We consider a given fragment ion detectable if its co-added peak area A exceeds 25 counts (i.e., 20% precision). Measurement times, τ, required to accumulate mass peak profiles to better than 20% precision are also given in Table 2, and this parameter is useful for measurement design to meet science objectives in future Venus cloud missions with limited operational time.
Fragmentation patterns for PH3 and H2S are obtained by evaluating the ratio of area under the daughter ion peak with respect to the area under the parent ion peak. From the area columns in Table 2, we obtain the following fragmentation patterns for PH3: P+/PH3+ = 0.320(9), PH+/PH3+ = 0.124(7), and PH2+/PH3+ = 0.327(13). These ratios compare well with the recommended NIST [20] values: 0.318, 0.125, and 0.329, respectively. Similarly, measured fragmentation patterns for H2S are as follows: 32S+/32SH2+ = 0.453(3), 33S+/32SH2+ = 0.0039(4), 32SH+/32SH2+ = 0.426(2), 34S+/32SH2+ = 0.0207(7), 34SH+/32SH2+ = 0.0208(14), 33SH2+/32SH2+ = 0.0083(12), and 34SH2+/32SH2+ = 0.044(1). Because NIST-recommended fragmentation patterns for H2S are given with 1Da mass resolution, we can only compare relative abundances of daughter mass channels with respect to the parent 34Da mass channel. For the 32Da/34Da peak ratio in H2S, the NIST value 0.446 compares well to the measured ratio, 32S+/(34S+ + 32SH2+) = 0.444(16). For the 33Da/34Da peak ratio in H2S, the measured ratio, (33S+ + 32SH+)/(34S+ + 32SH2+) = 0.42(4), matches the NIST value of 0.421. In addition, the measured ratio (34SH+ + 33SH2+)/(34S+ + 32SH2+) = 0.028(5), corresponds to the 35 Da/34 Da NIST value of 0.027. Lastly, we find that measured ratio, 34SH2+/(34S+ + 32SH2+) = 0.043(2), reproduces the NIST 36 Da/34 Da peak ratio of 0.043.
In Figure 4a, we show the isolated fragment ion P+, which can be used as a marker for the unambiguous detection of phosphorus; the identification of the other three phosphine fragment ions is hindered by the potential presence of molecular oxygen (if it were present in the calibrated gas mixture). As Figure 4b shows, the oxygen interference will be most prominent due to the major isotope, 16O16O, which will obscure the detection of PH+ fragment ions. The contribution of minor oxygen isotope, 16O17O, will mask the PH2+ fragment ion, see Figure 4c. The same conclusion holds for the 16O18O isotope in Figure 4d, where it will interfere with the fragment ion PH3+ (despite it being sufficiently separated from the H2S+ interference). Therefore, if molecular oxygen contributes to the gas mixture at 37 ppm level or above, its isotopes will present challenges in the deconvolution of three phosphine fragment ions, except P+. Thus, the only reliable method to improve phosphorus detection in Venus clouds would require the isolation of P+ by using the secular mode voltage scan function (shown in Figure 3b of [17]) and by operating the electron gun filament (ES-535) at the maximum heater current of 1.9 A. At this setting, filament temperature is ~1900 K, giving the electron emission current of ~10 mA and will yield two orders of magnitude greater number of created ions. Kimball Physics offers a larger ES-529 filament with a heating current of 5 A at 1 V and temperature of ~2200 K, yielding electron emission currents as high as 300 mA, but at the cost of shorter lifetimes due to the evaporation of iridium hairpin legs (see Figure 2b of [17]). Depending on the available power onboard the aerobot dedicated to mass spectrometer, and on the mission duration, it is possible to increase the sensitivity of the QIT-MS sensor by using two redundant high-density electron emitters with combined lifetimes sufficient to support the mission in its entirety.
At this high-density electron emission setting, referred to here as the secular low-resolution high-sensitivity mode of operation, the maximum thermionic emission of electrons will create a significantly higher number of fragment ions, of which we will confine only P+. Further increase in production of P+ ions can be achieved by prolonging the ionization phase or doubling the duty cycle from 50 Hz to 100 Hz where the 5 ms analysis phase will follow the 5 ms ionization phase. Additional flexibility in operating the QIT-MS sensor is in its ability to use the auxiliary r.f. voltage drives applied to endcap electrodes, which were electrically grounded by mechanical design for this study. The performance analyses of the ion trapping efficiencies using sweeps of secular frequencies (see Figure 3b of [17]), support the isolation and trapping of P+ ion fragments at 1ppb sensitivity level during 2.6 h of co-added measurements and will be benchmarked with experimental results in future studies involving sulfuric acid aerosols laden with phosphine gas.

4. Discussion

The successful calibration and performance validation of the QIT-MS for phosphine detection under Venus-analog conditions directly addresses a key limitation in prior remote sensing and orbital measurements—namely, the lack of in situ, high-resolution instruments capable of distinguishing PH3 from isobaric interferences such as SO2. Earlier claims of phosphine detection in Venus’s cloud decks [1,2,3] sparked intense debate due to both the unanticipated presence of a reduced phosphorus species in an oxidizing atmosphere and the limited spectral discrimination of Earth-based telescopes. Follow-up analyses challenged the original interpretation, citing potential SO2 contamination [4,5,6] and raising doubts about the reliability of remote data alone. Our findings, by contrast, demonstrate that the JPL QIT-MS can resolve these ambiguities through direct mass-selective detection at ppb levels in environments with high sulfuric acid vapor concentrations.
These results support two major working hypotheses for PH3’s presence on Venus: (1) a biogenic origin involving microbial production in the temperate cloud layer, and (2) an abiotic pathway linked to deep mantle or volcanic processes, potentially involving phosphorus redox cycling through phosphides, P4O6, and PO intermediates [13,14,15,16]. The ability to detect not only phosphine but also precursor and intermediate species positions the QIT-MS as a uniquely suited instrument for constraining both photochemical and thermochemical models of phosphorus chemistry in the Venusian atmosphere.
Beyond Venus, this work has broader implications for the design of volatile detection systems across planetary environments with chemically aggressive atmospheres (e.g., Titan, Io, exoplanets with sulfuric or hydrochloric acid clouds). The corrosion-resistance and stability demonstrated in this study lay the groundwork for long-duration aerial or descent missions capable of probing atmospheric disequilibria—a core objective in astrobiology and planetary habitability assessment.
Future research will focus on two directions. First, laboratory simulation of phosphorus-bearing gas mixtures (including PO, P2H4, and P4O6) will expand the QIT-MS calibration library and enhance discrimination of complex volcanic plumes. Second, integration of the instrument into high-altitude aerial platforms, such as long-duration balloons, will enable field deployment under dynamic sampling conditions. Additionally, future instrument configurations may incorporate a tunable laser spectrometer (TLS) in tandem with the QIT-MS to enhance sensitivity to sub-ppb levels of PH3 via rovibrational absorption, and to discriminate among isobaric interferences such as N2 and CO. This hybrid approach would combine the specificity of optical spectroscopy with the structural and isotopic resolving power of mass spectrometry, offering a powerful framework for multi-modal detection of reactive trace gases. Ultimately, the QIT-MS may serve as a cornerstone of future life-detection payloads, offering a robust platform for evaluating chemical disequilibria as potential biosignatures across the solar system.

Author Contributions

Conceptualization, D.N.; methodology, D.N.; software, D.N.; validation, D.N.; formal analysis, D.N.; investigation, D.N.; resources, D.N.; data curation, D.N.; sample preparation, X.Z.; writing—original draft preparation, D.N.; writing—review and editing, D.N.; visualization, D.N.; supervision, D.N.; project administration, D.N.; funding acquisition, D.N. All authors have read and agreed to the published version of the manuscript.

Funding

This research received no external funding.

Data Availability Statement

The data presented in this study are available on request from the corresponding author due to export control restrictions. Access will be granted on a case-by-case basis, subject to compliance with applicable regulations.

Acknowledgments

D.N. would like to thank S. Madzunkov for software support, whereas X.Z. would like to thank D. Nemchick, T.J. Crawford, B.J. Drouin, K. Sung, and S. Hallaway (KIN-TEK) for their technical contributions. This research was carried out at Jet Propulsion Laboratory, California Institute of Technology under a contract with NASA (80NM0018D0004). Government sponsorship acknowledged. © 2025 California Institute of Technology.

Conflicts of Interest

The authors declare no conflicts of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript; or in the decision to publish the results.

Abbreviations

The following abbreviations are used in this manuscript:
ALMAAtacama Large Millimeter/submillimeter Array
BMBase Module (in permeation tube system)
DSPSDecadal Strategy for Planetary Science and Astrobiology
JCMTJames Clerk Maxwell Telescope
JPLJet Propulsion Laboratory
NASANational Aeronautics and Space Administration
NISTNational Institute of Standards and Technology
PMPermeation Oven Module
QIT-MSQuadrupole Ion Trap Mass Spectrometer
S/NSignal-to-Noise Ratio
SCFMStandard Cubic Feet per Minute
VCGMVenus Climate and Geophysics Mission

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Figure 1. Hypothetical PH3 cycle in the equatorial region of Venus atmosphere.
Figure 1. Hypothetical PH3 cycle in the equatorial region of Venus atmosphere.
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Figure 2. Experimental setup for calibrated gas sample collection into lecture bottle; see text.
Figure 2. Experimental setup for calibrated gas sample collection into lecture bottle; see text.
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Figure 3. Mass spectra of PH3/H2S mixture recorded during 5 min (a), 10 min (b), 30 min (c), and accumulated during 2.6 h (d). Lower insets show integrated counts over time at 1s resolution, with colored areas indicating the co-added width in seconds that corresponds to the mass spectra shown in upper insets.
Figure 3. Mass spectra of PH3/H2S mixture recorded during 5 min (a), 10 min (b), 30 min (c), and accumulated during 2.6 h (d). Lower insets show integrated counts over time at 1s resolution, with colored areas indicating the co-added width in seconds that corresponds to the mass spectra shown in upper insets.
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Figure 4. Mass spectra of a PH3/H2S mixture in a CO2 ballast, eluted through a capillary into the QIT-MS sensor at an operating pressure of 7.1 × 10−7 Torr. (a) Detection of atomic phosphorus ion 31P+ at m/z ≈ 30.97, resolved from the background with a full width of 4.2 mDa above residual counts; (b) Spectrum showing atomic ion 32S+ and molecular ion PH+. The 32S+ peak has a width of 7.4 mDa above background. The 16O16O+ ion is a potential interference located ~8 mDa to the right of the PH+ peak; (c) Detection of atomic ion 33S+ to the left of the dominant molecular ion 32SH+, which has a width of 5.8 mDa above the noise level. The next most intense ion is 31PH2+, with a nearby interference from 16O17O+ and a weak signal from 31PD+; (d) Detection of major ion 32SH2+, followed by PH3+ and 34S+. Additional features include interferences from weaker ions such as 33SH+, 32SD+, PHD+, and overlapping oxygen isotopes 16O18O and 17O17O; (e) Detection of 34SH+ and 33SH2+, along with weak interferences from 33SD+, 32SHD+, PD2+, and PH2D+. Potential perturbers include 35Cl+ and oxygen isotopes such as 17O18O; (f) Detection of major ion 34SH2+, with weak interferences from 36S+, 34SD+, and 33SHD+. The 18O18O+ ion appears as a subsequent feature to the right of the main peak.
Figure 4. Mass spectra of a PH3/H2S mixture in a CO2 ballast, eluted through a capillary into the QIT-MS sensor at an operating pressure of 7.1 × 10−7 Torr. (a) Detection of atomic phosphorus ion 31P+ at m/z ≈ 30.97, resolved from the background with a full width of 4.2 mDa above residual counts; (b) Spectrum showing atomic ion 32S+ and molecular ion PH+. The 32S+ peak has a width of 7.4 mDa above background. The 16O16O+ ion is a potential interference located ~8 mDa to the right of the PH+ peak; (c) Detection of atomic ion 33S+ to the left of the dominant molecular ion 32SH+, which has a width of 5.8 mDa above the noise level. The next most intense ion is 31PH2+, with a nearby interference from 16O17O+ and a weak signal from 31PD+; (d) Detection of major ion 32SH2+, followed by PH3+ and 34S+. Additional features include interferences from weaker ions such as 33SH+, 32SD+, PHD+, and overlapping oxygen isotopes 16O18O and 17O17O; (e) Detection of 34SH+ and 33SH2+, along with weak interferences from 33SD+, 32SHD+, PD2+, and PH2D+. Potential perturbers include 35Cl+ and oxygen isotopes such as 17O18O; (f) Detection of major ion 34SH2+, with weak interferences from 36S+, 34SD+, and 33SHD+. The 18O18O+ ion appears as a subsequent feature to the right of the main peak.
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Table 1. PH3 and H2S concentrations at different flow rates of CO2 carrier gas for oven temperature set at 30 °C.
Table 1. PH3 and H2S concentrations at different flow rates of CO2 carrier gas for oven temperature set at 30 °C.
Flow Rate (sccm)500100015002000250030003500400045005000
PH3 (ppb)6231211612109876
H2S (ppb)5662831891421139581716357
Table 2. List of identified ion fragments, their positions (m/q), signal-to-noise ratios (Sp/N), peak areas (A), and counting precisions (prec.) extracted from the 2.6 h co-added mass spectra. Minimum accumulation time, τ, required for measurement precision better than 20% is also provided.
Table 2. List of identified ion fragments, their positions (m/q), signal-to-noise ratios (Sp/N), peak areas (A), and counting precisions (prec.) extracted from the 2.6 h co-added mass spectra. Minimum accumulation time, τ, required for measurement precision better than 20% is also provided.
PeakIonm/qSp/NArea, Aprec., %τ, sPeakIonm/qSp/NArea, Aprec., %τ, s
(1)P+30.9738(2)29.5540(15)4.3434(7)34S+33.9678(2)12.4283(10)5.9827
(2)32S+31.9717(2)391.46206(34)1.338(8)32SH2+33.9878(2)79313692(38)1.017
(3)PH+31.9814(2)11.2209(11)6.91120(9)PH3+33.9974(2)99.81685(17)2.4139
(4)33S+32.9714(2)3.753(5)13.74415(10)34SH+34.9754(2)12.2285(19)5.9821
(5)32SH+32.9798(2)3765827(21)1.340(11)33SH2+34.9870(2)7.4113(16)9.42071
(6)PH2+32.9894(2)37.2551(21)4.3425(12)34SH2+35.9834(2)36.7603(12)4.1388
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Nikolić, D.; Zhang, X. Calibration and Detection of Phosphine Using a Corrosion-Resistant Ion Trap Mass Spectrometer. Biophysica 2025, 5, 28. https://doi.org/10.3390/biophysica5030028

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Nikolić D, Zhang X. Calibration and Detection of Phosphine Using a Corrosion-Resistant Ion Trap Mass Spectrometer. Biophysica. 2025; 5(3):28. https://doi.org/10.3390/biophysica5030028

Chicago/Turabian Style

Nikolić, Dragan, and Xu Zhang. 2025. "Calibration and Detection of Phosphine Using a Corrosion-Resistant Ion Trap Mass Spectrometer" Biophysica 5, no. 3: 28. https://doi.org/10.3390/biophysica5030028

APA Style

Nikolić, D., & Zhang, X. (2025). Calibration and Detection of Phosphine Using a Corrosion-Resistant Ion Trap Mass Spectrometer. Biophysica, 5(3), 28. https://doi.org/10.3390/biophysica5030028

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