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15 pages, 6280 KiB  
Article
Abundance Analysis of the Spectroscopic Binary α Equulei
by Anna Romanovskaya and Sergey Zvyagintsev
Galaxies 2025, 13(4), 88; https://doi.org/10.3390/galaxies13040088 (registering DOI) - 6 Aug 2025
Abstract
We present the results of a detailed spectroscopic analysis of the double-lined spectroscopic binary system α Equulei. High-resolution spectra obtained with the SOPHIE spectrograph at various orbital phases were used to disentangle the composite spectra into individual components using the spectral line deconvolution [...] Read more.
We present the results of a detailed spectroscopic analysis of the double-lined spectroscopic binary system α Equulei. High-resolution spectra obtained with the SOPHIE spectrograph at various orbital phases were used to disentangle the composite spectra into individual components using the spectral line deconvolution (SLD) iterative technique. The atmospheric parameters of each component were refined with the SME (spectroscopy made easy) package and further validated by following methods: SED (spectral energy distribution), the independence of the abundance of individual Fe iii lines on the reduced equivalent width and ionisation potential, and fitting with the hydrogen line profiles. Our accurate abundance analysis uses a hybrid technique for spectrum synthesis. This is based on classical model atmospheres that are calculated under the assumption of local thermodynamic equilibrium (LTE), together with non-LTE (NLTE) line formation. This is used for 15 out of the 25 species from C to Nd that were investigated. The primary giant component (G7-type) exhibits a typical abundance pattern for normal stars, with elements from He to Fe matching solar values and neutron-capture elements showing overabundances up to 0.5 dex. In contrast, the secondary dwarf component displays characteristics of an early stage Am star. The observed abundance differences imply distinct diffusion processes in their atmospheres. Our results support the scenario in which chemical peculiarities in Am stars develop during the main sequence and may decrease as the stars evolve toward the subgiant branch. Full article
(This article belongs to the Special Issue Stellar Spectroscopy, Molecular Astronomy and Atomic Astronomy)
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17 pages, 7038 KiB  
Article
Polyploidy Induction of Wild Diploid Blueberry V. fuscatum
by Emily Walter, Paul M. Lyrene and Ye Chu
Horticulturae 2025, 11(8), 921; https://doi.org/10.3390/horticulturae11080921 (registering DOI) - 5 Aug 2025
Abstract
Diploid Vaccinium fuscatum is a wild blueberry species with a low chilling requirement, an evergreen growth habit, and soil adaptability to southeast US growing regions. Regardless of its potential to improve the abiotic and biotic resilience of cultivated blueberries, this species has rarely [...] Read more.
Diploid Vaccinium fuscatum is a wild blueberry species with a low chilling requirement, an evergreen growth habit, and soil adaptability to southeast US growing regions. Regardless of its potential to improve the abiotic and biotic resilience of cultivated blueberries, this species has rarely been used for blueberry breeding. One hurdle is the ploidy barrier between diploid V. fuscatum and tetraploid cultivated highbush blueberries. To overcome the ploidy barrier, vegetative shoots micro-propagated from one genotype of V. fuscatum, selected because it grew vigorously in vitro and two southern highbush cultivars, ‘Emerald’ and ‘Rebel,’ were treated with colchicine. While shoot regeneration was severely repressed in ‘Emerald’ and ‘Rebel,’ shoot production from the V. fuscatum clone was not compromised at either 500 µM or 5000 µM colchicine concentrations. Due to the high number of shoots produced in vitro via the V. fuscatum clone shoots of this clone that had an enlarged stem diameter in vitro were subjected to flow cytometer analysis to screen for induced polyploidy. Sixteen synthetic tetraploid V. fuscatum, one synthetic octoploid ‘Emerald,’ and three synthetic octoploid ‘Rebel’ were identified. Growth rates of the polyploid-induced mutants were reduced compared to their respective wildtype controls. The leaf width and length of synthetic tetraploid V. fuscatum and synthetic octoploid ‘Emerald’ was increased compared to the wildtypes, whereas the leaf width and length of synthetic octoploid ‘Rebel’ were reduced compared to the wildtype controls. Significant increases in stem thickness and stomata guard cell length were found in the polyploidy-induced mutant lines compared to the wildtypes. In the meantime, stomata density was reduced in the mutant lines. These morphological changes may improve drought tolerance and photosynthesis in these mutant lines. Synthetic tetraploid V. fuscatum can be used for interspecific hybridization with highbush blueberries to expand the genetic base of cultivated blueberries. Full article
(This article belongs to the Section Propagation and Seeds)
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16 pages, 2547 KiB  
Article
Formation and Biological Characteristics Analysis of Artificial Gynogenetic WuLi Carp Induced by Inactivated Sperm of Megalobrama Amblycephala
by Xiaowei Xu, Enkui Hu, Qian Xiao, Xu Huang, Chongqing Wang, Xidan Xu, Kun Zhang, Yue Zhou, Jinhai Bai, Zhengkun Liu, Yuchen Jiang, Yan Tang, Xinyi Deng, Siyang Li, Wanjing Peng, Ling Xiong, Yuhan Yang, Zeyang Li, Ming Ma, Qinbo Qin and Shaojun Liuadd Show full author list remove Hide full author list
Biology 2025, 14(8), 994; https://doi.org/10.3390/biology14080994 (registering DOI) - 4 Aug 2025
Viewed by 15
Abstract
Artificial gynogenesis is an essential technique for aquaculture breeding. Fertile offspring of the WuLi carp (Cyprinus carpio var. Quanzhounensis, 2n = 100, WLC) were successfully produced via gynogenesis using ultraviolet-irradiated sperm from the blunt snout bream (Megalobrama amblycephala, 2 [...] Read more.
Artificial gynogenesis is an essential technique for aquaculture breeding. Fertile offspring of the WuLi carp (Cyprinus carpio var. Quanzhounensis, 2n = 100, WLC) were successfully produced via gynogenesis using ultraviolet-irradiated sperm from the blunt snout bream (Megalobrama amblycephala, 2n = 48, BSB). As anticipated, gonadal section examination confirmed that all gynogenetic WuLi carp (2n = 100, GWB) were female. To investigate whether paternal DNA fragments from BSB were integrated into the GWB genome, comparative analyses of morphological traits, DNA content, chromosomal numbers, 5S rDNA sequences, microsatellite DNA markers, fluorescence in situ hybridization (FISH), growth performance and nutritional composition were systematically conducted between GWB and maternal WLC. The results revealed pronounced maternal inheritance patterns across morphological characteristics, DNA quantification, chromosomal configurations, 5S rDNA sequences and FISH signals, while microsatellite detection unequivocally confirmed paternal BSB DNA fragment integration into the GWB genome. Remarkably, GWB demonstrated significantly superior growth performance and elevated unsaturated fatty acid content relative to the maternal line. This approach not only addressed germplasm degradation in WLC but also provided valuable theoretical foundations for breeding programs in this commercially significant species. Full article
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21 pages, 3086 KiB  
Article
Integrative Population Genomics Reveals Niche Differentiation and Gene Flow in Chinese Sclerophyllous Oaks (Quercus Sect. Ilex)
by Miao-Miao Ju, Ming Yue and Gui-Fang Zhao
Plants 2025, 14(15), 2403; https://doi.org/10.3390/plants14152403 - 3 Aug 2025
Viewed by 198
Abstract
Elucidating the coexistence mechanisms of rapidly diverging species has long been a challenge in evolutionary biology. Genome-wide polymorphic loci are expected to provide insights into the speciation processes of these closely related species. This study focused on seven Chinese sclerophyllous oaks, represented by [...] Read more.
Elucidating the coexistence mechanisms of rapidly diverging species has long been a challenge in evolutionary biology. Genome-wide polymorphic loci are expected to provide insights into the speciation processes of these closely related species. This study focused on seven Chinese sclerophyllous oaks, represented by Quercus spinosa, Quercus aquifolioides, Quercus rehderiana, Quercus guyavifolia, Quercus monimotricha, Quercus semecarpifolia, and Quercus senescens, employing 27,592 single-nucleotide polymorphisms to examine their phylogenetic relationships at the genomic level. Combined with genetic structure analysis, phylogenetic trees revealed that the genetic clustering of individuals was influenced by both geographic distance and ancestral genetic components. Furthermore, this study confirmed the existence of reticulate evolutionary relationships among the species. Frequent gene flow and introgression within the seven species were primarily responsible for the ambiguous interspecies boundaries, with hybridization serving as a major driver of reticulate evolution. Additionally, the seven species exhibited distinct differences in niche occupancy. By reconstructing the climatic adaptability of ancestral taxonomic units, we found that the climatic tolerance of each species displayed differential responses to 19 climatic factors. Consequently, ecological niche differentiation and variations in habitat adaptation contributed to the preservation of species boundaries. This study provides a comprehensive understanding of the speciation processes in rapidly diverging genera and underscores the significance of both genetic and ecological factors in the formation and maintenance of species boundaries. Full article
(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
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25 pages, 2786 KiB  
Article
Xylem Functional Anatomy of Pure-Species and Interspecific Hybrid Clones of Eucalyptus Differing in Drought Resistance
by José Gándara, Matías Nión, Silvia Ross, Jaime González-Tálice, Paolo Tabeira and María Elena Fernández
Forests 2025, 16(8), 1267; https://doi.org/10.3390/f16081267 - 2 Aug 2025
Viewed by 179
Abstract
Climate extremes threaten the resilience of Eucalyptus plantations, yet hybridization with drought-tolerant species may enhance stress tolerance. This study analyzed xylem anatomical and functional drought responses in commercial Eucalyptus grandis (GG) clones and hybrids: E. grandis × camaldulensis (GC), E. grandis × tereticornis [...] Read more.
Climate extremes threaten the resilience of Eucalyptus plantations, yet hybridization with drought-tolerant species may enhance stress tolerance. This study analyzed xylem anatomical and functional drought responses in commercial Eucalyptus grandis (GG) clones and hybrids: E. grandis × camaldulensis (GC), E. grandis × tereticornis (GT), and E. grandis × urophylla (GU1, GU2). We evaluated vessel traits (water transport), fibers (mechanical support), and wood density (D) in stems and branches. Theoretical stem hydraulic conductivity (kStheo), vessel lumen fraction (F), vessel composition (S), and associations with previous hydraulic and growth data were assessed. While general drought responses occurred, GC had the most distinct xylem profile. This may explain it having the highest performance in different irrigation conditions. Red gum hybrids (GC, GT) maintained kStheo under drought, with stable F and a narrower vessel size, especially in branches. Conversely, GG and GU2 reduced F and S; and stem kStheo declined for a similar F in these clones, indicating vascular reconfiguration aligning the stem with the branch xylem. Almost all clones increased D under drought in any organ, with the highest increase in red gum hybrids. These results reveal diverse anatomical adjustments to drought among clones, partially explaining their growth responses. Full article
(This article belongs to the Section Forest Ecophysiology and Biology)
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15 pages, 796 KiB  
Article
Electroassisted Incorporation of Ferrocene Within Sol–Gel Silica Films to Enhance Electron Transfer—Part II: Boosting Protein Sensing with Polyelectrolyte-Modified Silica
by Rayane-Ichrak Loughlani, Alonso Gamero-Quijano and Francisco Montilla
Molecules 2025, 30(15), 3246; https://doi.org/10.3390/molecules30153246 - 2 Aug 2025
Viewed by 174
Abstract
Silica-modified electrodes possess physicochemical properties that make them valuable in electrochemical sensing and energy-related applications. Although intrinsically insulating, silica thin films can selectively interact with redox species, producing sieving effects that enhance electrochemical responses. We synthesized Class I hybrid silica matrices incorporating either [...] Read more.
Silica-modified electrodes possess physicochemical properties that make them valuable in electrochemical sensing and energy-related applications. Although intrinsically insulating, silica thin films can selectively interact with redox species, producing sieving effects that enhance electrochemical responses. We synthesized Class I hybrid silica matrices incorporating either negatively charged poly(4-styrene sulfonic acid) or positively charged poly(diallyl dimethylammonium chloride). These hybrid films were deposited onto ITO electrodes and evaluated via cyclic voltammetry in aqueous ferrocenium solutions. The polyelectrolyte charge played a key role in the electroassisted incorporation of ferrocene: silica-PSS films promoted accumulation, while silica-PDADMAC films hindered it due to electrostatic repulsion. In situ UV-vis spectroscopy confirmed that only a fraction of the embedded ferrocene was electroactive. Nevertheless, this fraction enabled effective mediated detection of cytochrome c in solution. These findings highlight the crucial role of ionic interactions and hybrid composition in electron transfer to redox proteins, providing valuable insights for the development of advanced bioelectronic sensors. Full article
(This article belongs to the Section Electrochemistry)
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26 pages, 1790 KiB  
Article
A Hybrid Deep Learning Model for Aromatic and Medicinal Plant Species Classification Using a Curated Leaf Image Dataset
by Shareena E. M., D. Abraham Chandy, Shemi P. M. and Alwin Poulose
AgriEngineering 2025, 7(8), 243; https://doi.org/10.3390/agriengineering7080243 - 1 Aug 2025
Viewed by 214
Abstract
In the era of smart agriculture, accurate identification of plant species is critical for effective crop management, biodiversity monitoring, and the sustainable use of medicinal resources. However, existing deep learning approaches often underperform when applied to fine-grained plant classification tasks due to the [...] Read more.
In the era of smart agriculture, accurate identification of plant species is critical for effective crop management, biodiversity monitoring, and the sustainable use of medicinal resources. However, existing deep learning approaches often underperform when applied to fine-grained plant classification tasks due to the lack of domain-specific, high-quality datasets and the limited representational capacity of traditional architectures. This study addresses these challenges by introducing a novel, well-curated leaf image dataset consisting of 39 classes of medicinal and aromatic plants collected from the Aromatic and Medicinal Plant Research Station in Odakkali, Kerala, India. To overcome performance bottlenecks observed with a baseline Convolutional Neural Network (CNN) that achieved only 44.94% accuracy, we progressively enhanced model performance through a series of architectural innovations. These included the use of a pre-trained VGG16 network, data augmentation techniques, and fine-tuning of deeper convolutional layers, followed by the integration of Squeeze-and-Excitation (SE) attention blocks. Ultimately, we propose a hybrid deep learning architecture that combines VGG16 with Batch Normalization, Gated Recurrent Units (GRUs), Transformer modules, and Dilated Convolutions. This final model achieved a peak validation accuracy of 95.24%, significantly outperforming several baseline models, such as custom CNN (44.94%), VGG-19 (59.49%), VGG-16 before augmentation (71.52%), Xception (85.44%), Inception v3 (87.97%), VGG-16 after data augumentation (89.24%), VGG-16 after fine-tuning (90.51%), MobileNetV2 (93.67), and VGG16 with SE block (94.94%). These results demonstrate superior capability in capturing both local textures and global morphological features. The proposed solution not only advances the state of the art in plant classification but also contributes a valuable dataset to the research community. Its real-world applicability spans field-based plant identification, biodiversity conservation, and precision agriculture, offering a scalable tool for automated plant recognition in complex ecological and agricultural environments. Full article
(This article belongs to the Special Issue Implementation of Artificial Intelligence in Agriculture)
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12 pages, 1678 KiB  
Article
Molecular Surveillance of Plasmodium spp. Infection in Neotropical Primates from Bahia and Minas Gerais, Brazil
by Luana Karla N. S. S. Santos, Sandy M. Aquino-Teixeira, Sofía Bernal-Valle, Beatriz S. Daltro, Marina Noetzold, Aloma Roberta C. Silva, Denise Anete M. Alvarenga, Luisa B. Silva, Ramon S. Oliveira, Cirilo H. Oliveira, Iago A. Celestino, Maria E. Gonçalves-dos-Santos, Thaynara J. Teixeira, Anaiá P. Sevá, Fabrício S. Campos, Bergmann M. Ribeiro, Paulo M. Roehe, Danilo Simonini-Teixeira, Filipe V. S. Abreu, Cristiana F. A. Brito and George R. Albuquerqueadd Show full author list remove Hide full author list
Pathogens 2025, 14(8), 757; https://doi.org/10.3390/pathogens14080757 - 31 Jul 2025
Viewed by 298
Abstract
In Brazil, Plasmodium infections in non-human primates (NHPs) have been associated with P. simium and P. brasilianum, which are morphologically and genetically similar to the human-infecting species P. vivax and P. malariae, respectively. Surveillance and monitoring of wild NHPs are crucial [...] Read more.
In Brazil, Plasmodium infections in non-human primates (NHPs) have been associated with P. simium and P. brasilianum, which are morphologically and genetically similar to the human-infecting species P. vivax and P. malariae, respectively. Surveillance and monitoring of wild NHPs are crucial for understanding the distribution of these parasites and assessing the risk of zoonotic transmission. This study aimed to detect the presence of Plasmodium spp. genetic material in Platyrrhini primates from 47 municipalities in the states of Bahia and Minas Gerais. The animals were captured using Tomahawk-type live traps baited with fruit or immobilized with tranquilizer darts. Free-ranging individuals were chemically restrained via inhalation anesthesia using VetBag® or intramuscular anesthesia injection. Blood samples were collected from the femoral vein. A total of 298 blood and tissue samples were collected from 10 primate species across five genera: Alouatta caraya (25), Alouatta guariba clamitans (1), Callicebus melanochir (1), Callithrix geoffroyi (28), Callithrix jacchus (4), Callithrix kuhlii (31), Callithrix penicillata (175), Callithrix spp. hybrids (15), Leontopithecus chrysomelas (16), Sapajus robustus (1), and Sapajus xanthosthernos (1). Molecular diagnosis was performed using a nested PCR targeting the 18S small subunit ribosomal RNA (18S SSU rRNA) gene, followed by sequencing. Of the 298 samples analyzed, only one (0.3%) from Bahia tested positive for Plasmodium brasilianum/P. malariae. This represents the first detection of this parasite in a free-living C. geoffroyi in Brazil. These findings highlight the importance of continued surveillance of Plasmodium infections in NHPs to identify regions at risk for zoonotic transmission. Full article
(This article belongs to the Section Parasitic Pathogens)
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19 pages, 331 KiB  
Article
Antipredator Response in Domestic Japanese Quail and Game-Farmed Quail
by Pedro González-Redondo, Natalia Diego-Fuentes and Carlos Romero
Animals 2025, 15(15), 2237; https://doi.org/10.3390/ani15152237 - 30 Jul 2025
Viewed by 219
Abstract
Game-farmed quails that are currently raised in captivity and released in hunting preserves are not attractive for many hunters because of their low antipredator instinct, which is due to the fact that in most cases, these farm-reared quails are hybrids between European common [...] Read more.
Game-farmed quails that are currently raised in captivity and released in hunting preserves are not attractive for many hunters because of their low antipredator instinct, which is due to the fact that in most cases, these farm-reared quails are hybrids between European common (Coturnix coturnix) and Japanese (Coturnix japonica) quails, with the latter having been selectively bred for docility. This study aimed at assessing the antipredator response of game-farmed and Japanese quails by performing three tests: human approach test, simulated aerial predator approach test and tonic immobility test. Thirty game-farmed quails (average body weight: 133 g) and thirty Japanese quails (323 g) were subjected to the tests. For each genotype of quail, fifteen males and fifteen females were used. In the human approach test, the distance at which quails moved was greater for game-farmed quails than for Japanese ones (37.4 vs. 19.6 m, p < 0.001). In the simulated aerial predator approach test, female quails of the Japanese species crouched down at the longest distance with respect to the predator (9.83 m), whereas no significant difference existed for this trait among the other three groups (6.84 m, on average). The percentage of quails flying when the predator got closer was higher for the Japanese species than for the game-farmed quails (23.3 vs. 3.33%, p = 0.023). Fewer inductions were needed to cause tonic immobility in the game-farmed quails than in the Japanese ones (3.10 vs. 4.10, p = 0.009), but then, the duration of the tonic immobility response did not differ significantly between the two genotypes. No effect of sex was detected in the human approach and tonic immobility tests. In conclusion, as compared with Japanese quails, game-farmed quails showed more fearful behaviour when confronted with a human being. Full article
(This article belongs to the Section Poultry)
36 pages, 539 KiB  
Review
Genomic Adaptation, Environmental Challenges, and Sustainable Yak Husbandry in High-Altitude Pastoral Systems
by Saima Naz, Ahmad Manan Mustafa Chatha, Qudrat Ullah, Muhammad Farooq, Tariq Jamil, Raja Danish Muner and Azka Kiran
Vet. Sci. 2025, 12(8), 714; https://doi.org/10.3390/vetsci12080714 - 29 Jul 2025
Viewed by 204
Abstract
The yak (Bos grunniens) is a key species in high-altitude rangelands of Asia. Despite their ecological and economic importance, yak production faces persistent challenges, including low milk yields, vulnerability to climate changes, emerging diseases, and a lack of systematic breeding programs. [...] Read more.
The yak (Bos grunniens) is a key species in high-altitude rangelands of Asia. Despite their ecological and economic importance, yak production faces persistent challenges, including low milk yields, vulnerability to climate changes, emerging diseases, and a lack of systematic breeding programs. This review presents the genomic, physiological, and environmental dimensions of yak biology and husbandry. Genes such as EPAS1, which encodes hypoxia-inducible transcription factors, underpin physiological adaptations, including enlarged cardiopulmonary structures, elevated erythrocyte concentrations, and specialized thermoregulatory mechanisms that enable their survival at elevations of 3000 m and above. Copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) present promising markers for improving milk and meat production, disease resistance, and metabolic efficiency. F1 and F2 generations of yak–cattle hybrids show superior growth and milk yields, but reproductive barriers, such as natural mating or artificial insemination, and environmental factors limit the success of these hybrids beyond second generation. Infectious diseases, such as bovine viral diarrhea and antimicrobial-resistant and biofilm-forming Enterococcus and E. coli, pose risks to herd health and food safety. Rising ambient temperatures, declining forage biomass, and increased disease prevalence due to climate changes risk yak economic performance and welfare. Addressing these challenges by nutritional, environmental, and genetic interventions will safeguard yak pastoralism. This review describes the genes associated with different yak traits and provides an overview of the genetic adaptations of yaks (Bos grunniens) to environmental stresses at high altitudes and emphasizes the need for conservation and improvement strategies for sustainable husbandry of these yaks. Full article
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30 pages, 3370 KiB  
Article
Rivastigmine Templates with Antioxidant Motifs—A Medicinal Chemist’s Toolbox Towards New Multipotent AD Drugs
by Inês Dias, Marlène Emmanuel, Paul Vogt, Catarina Guerreiro-Oliveira, Inês Melo-Marques, Sandra M. Cardoso, Rita C. Guedes, Sílvia Chaves and M. Amélia Santos
Antioxidants 2025, 14(8), 921; https://doi.org/10.3390/antiox14080921 (registering DOI) - 28 Jul 2025
Viewed by 237
Abstract
A series of rivastigmine hybrids, incorporating rivastigmine fragments (RIV) and a set of different antioxidant scaffolds, were designed, synthesized, and evaluated as multifunctional agents for the potential therapy of Alzheimer’s disease (AD). In vitro bioactivity assays indicated that some compounds have very good [...] Read more.
A series of rivastigmine hybrids, incorporating rivastigmine fragments (RIV) and a set of different antioxidant scaffolds, were designed, synthesized, and evaluated as multifunctional agents for the potential therapy of Alzheimer’s disease (AD). In vitro bioactivity assays indicated that some compounds have very good antioxidant (radical-scavenging) activity. The compounds also displayed good inhibitory activity against cholinesterases, though the bigger-sized hybrids showed higher inhibitory ability for butyrylcholinesterase (BChE) than for acetylcholinesterase (AChE), due to the larger active site cavity of BChE. All the hybrids exhibited an inhibition capacity for self-induced amyloid-β (Aβ1–42) aggregation. Furthermore, cell assays demonstrated that some compounds showed capacity for rescuing neuroblastoma cells from toxicity induced by reactive oxygen species (ROS). Among these RIV hybrids, the best in vitro multifunctional capacity was found for the caffeic acid derivatives enclosing catechol moieties (4AY5, 4AY6), though the Trolox derivatives (4AY2, 4BY2) presented the best cell neuroprotective activity against oxidative damage. Molecular-docking studies provided structural insights into the binding modes of RIV-based hybrids to the cholinesterases, revealing key interaction patterns despite some lack of correlation with inhibitory potency. Overall, the balanced multifunctional profiles of these hybrids render them potentially promising candidates for treating AD, thus deserving further investigation. Full article
(This article belongs to the Special Issue Oxidative Stress as a Therapeutic Target of Alzheimer’s Disease)
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17 pages, 1525 KiB  
Article
A New Set of SSR Markers Combined in One Reaction for Efficient Genotyping of the Hexaploid European Plum (Prunus domestica L.)
by Jana Čmejlová, Kamila Pluhařová, Boris Krška and Radek Čmejla
Plants 2025, 14(15), 2281; https://doi.org/10.3390/plants14152281 - 24 Jul 2025
Viewed by 288
Abstract
The European plum (Prunus domestica L.) is a hexaploid species that is grown worldwide for its tasty fruits. Many pomological forms and varieties exist, and thus it is important for genebank curators, breeders, growers, and/or control authorities to distinguish them with certainty. [...] Read more.
The European plum (Prunus domestica L.) is a hexaploid species that is grown worldwide for its tasty fruits. Many pomological forms and varieties exist, and thus it is important for genebank curators, breeders, growers, and/or control authorities to distinguish them with certainty. The purpose of this study was to select and verify a set of simple sequence repeat (SSR) markers for reliable genotyping, and to optimize their use in a one-reaction format for easy routine practice. After testing 78 SSR markers from different diploid Prunus species, 8 SSR markers were selected, multiplexed, and successfully verified as being able to distinguish all 242 unique genotypes tested. The selected markers were relatively easily scored and highly heterogenic, giving more than 35 alleles/genotype on average. The allele atlas was created to become a valuable tool for allele calling that should lead to standardized and reliable genotyping results between laboratories. The population analysis confirmed high diversity of the Czech germplasm collection used. The kit was also successfully tested for diploid “plums” of various origins and interspecies hybrids, as these are sometimes phenotypically indistinguishable from hexaploid European plums. The one-tube approach substantially simplified the plum genotyping laboratory workflow, minimizes errors, and saves labor, time, and money. Full article
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16 pages, 2141 KiB  
Article
Mitochondrial Genomes of Distant Fish Hybrids Reveal Maternal Inheritance Patterns and Phylogenetic Relationships
by Shixi Chen, Fardous Mohammad Safiul Azam, Li Ao, Chanchun Lin, Jiahao Wang, Rui Li and Yuanchao Zou
Diversity 2025, 17(8), 510; https://doi.org/10.3390/d17080510 - 24 Jul 2025
Viewed by 275
Abstract
As distant hybridization has profound implications for evolutionary biology, aquaculture, and biodiversity conservation, this study aims to elucidate patterns of maternal inheritance, genetic divergence, and phylogenetic relationships by synthesizing mitochondrial genome (mitogenome) data from 74 distant hybrid fish species. These hybrids span diverse [...] Read more.
As distant hybridization has profound implications for evolutionary biology, aquaculture, and biodiversity conservation, this study aims to elucidate patterns of maternal inheritance, genetic divergence, and phylogenetic relationships by synthesizing mitochondrial genome (mitogenome) data from 74 distant hybrid fish species. These hybrids span diverse taxa, including 48 freshwater and 26 marine species, with a focus on Cyprinidae (n = 35) and Epinephelus (n = 14), representing the most frequently hybridized groups in freshwater and marine systems, respectively. Mitogenome lengths were highly conserved (15,973 to 17,114 bp); however, the genetic distances between hybrids and maternal species varied from 0.001 to 0.17, with 19 hybrids (25.7%) showing distances >0.02. Variable sites in these hybrids were randomly distributed but enriched in hypervariable regions, such as the D-loop and NADH dehydrogenase subunits 1, 3 and 6 (ND2, ND3, and ND6) genes, likely reflecting maternal inheritance (reported in Cyprinus carpio × Carassius auratus). Moreover, these genes were under purifying selection pressure, revealing their conserved nature. Phylogenetic reconstruction using complete mitogenomes revealed three distinct clades in hybrids: (1) Acipenseriformes, (2) a freshwater cluster dominated by Cypriniformes and Siluriformes, and (3) a marine cluster comprising Centrarchiformes, Pleuronectiformes, Scombriformes, Cichliformes, Anabantiformes, Tetraodontiformes, Perciformes, and Salmoniformes. The prevalence of Cyprinidae hybrids underscores their importance in aquaculture for hybridization, where traits such as rapid growth and disease resistance are enhanced. In contrast, marine hybrids are valued for their market value and adaptability. While mitogenome data robustly support maternal inheritance in most cases, exceptions suggest complex mechanisms, such as doubly uniparental inheritance (DUI), in distantly related crosses. Moreover, AT-skew of genes in hybrids revealed a paternal leakage of traits in mitogenomes. This study also highlights ecological risks, such as genetic swamping in native populations, emphasizing the need for responsible hybridization practices. These findings advance our understanding of the role of hybridization in fish evolution and aquaculture, providing a genomic framework and policy recommendations for optimizing breeding programs, hybrid introduction, and mitigating conservation challenges. Full article
(This article belongs to the Section Freshwater Biodiversity)
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18 pages, 2839 KiB  
Article
Alien Flora on Weizhou Island, Northern South China Sea: Inventory and Invasion Risk Assessment
by Hong Wei, Xuan Wu and Linyu Bai
Diversity 2025, 17(8), 508; https://doi.org/10.3390/d17080508 - 24 Jul 2025
Viewed by 288
Abstract
Islands subjected to anthropogenic disturbance are highly susceptible to alien plant invasions. However, the alien floral diversity of China’s islands has been insufficiently studied, hindering its control. Weizhou Island (northern South China Sea) has experienced long-term human exploitation. We inventorized its alien, naturalized, [...] Read more.
Islands subjected to anthropogenic disturbance are highly susceptible to alien plant invasions. However, the alien floral diversity of China’s islands has been insufficiently studied, hindering its control. Weizhou Island (northern South China Sea) has experienced long-term human exploitation. We inventorized its alien, naturalized, and invasive vascular plants (based on herbarium specimen data for 2018–2024 and surveys of 112 plots); analyzed species composition, origins, life forms, and habitats; and conducted an invasive species risk assessment. This identified 203 aliens, including infraspecific and hybrid taxa, 129 (63.5%) naturalized and 71 (55.0% of the naturalized species) invasive. The aliens were dominated by the Fabaceae, Asteraceae, and Euphorbiaceae, particularly genera such as Euphorbia, Senna, and Portulaca, originating primarily in North America, Oceania, and Africa. Perennial herbs were the most common lifeform, followed by annual herbs and shrubs. Invasion hotspots were primarily abandoned farmland, roadsides, and agricultural lands. Using the Analytic Hierarchy Process, we classified the 71 invasive species as representing high-risk, moderate-risk, and low-risk (20, 16, and 35 species, respectively). Bidens pilosa, Ageratum conyzoides, Opuntia dillenii, and Leucaena leucocephala pose severe threats to the island ecosystem. This first complete inventory of the alien flora on Weizhou Island offers critical insight into the management of invasive alien plants in island ecosystems. Full article
(This article belongs to the Section Plant Diversity)
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19 pages, 1553 KiB  
Review
Perennial Grains in Russia: History, Status, and Perspectives
by Alexey Morgounov, Olga Shchuklina, Inna Pototskaya, Amanjol Aydarov and Vladimir Shamanin
Crops 2025, 5(4), 46; https://doi.org/10.3390/crops5040046 - 23 Jul 2025
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Abstract
The review summarizes the historical and current research on perennial grain breeding in Russia within the context of growing global interest in perennial crops. N.V. Tsitsin’s pioneering work in the 1930s produced the first wheat–wheatgrass amphiploids, which demonstrated the capacity to regrow after [...] Read more.
The review summarizes the historical and current research on perennial grain breeding in Russia within the context of growing global interest in perennial crops. N.V. Tsitsin’s pioneering work in the 1930s produced the first wheat–wheatgrass amphiploids, which demonstrated the capacity to regrow after harvest and survive for 2–3 years. Subsequent research at the Main Botanical Garden in Moscow focused on characterizing Tsitsin’s material, selecting superior germplasm, and expanding genetic diversity through new cycles of hybridization and selection. This work led to the development of a new crop species, Trititrigia, and the release of cultivar ‘Pamyati Lyubimovoy’ in 2020, designed for dual-purpose production of high-quality grain and green biomass. Intermediate wheatgrass (Thinopyrum intermedium) is native to Russia, where several forage cultivars have been released and cultivated. Two large-grain cultivars (Sova and Filin) were developed from populations provided by the Land Institute and are now grown by farmers. Perennial rye was developed through interspecific crosses between Secale cereale and S. montanum, demonstrating persistence for 2–3 years with high biomass production and grain yields of 1.5–2.0 t/ha. Hybridization between Sorghum bicolor and S. halepense resulted in two released cultivars of perennial sorghum used primarily for forage production under arid conditions. Russia’s agroclimatic diversity in agricultural production systems provides significant opportunities for perennial crop development. The broader scientific and practical implications of perennial crops in Russia extend to climate-resilient, sustainable agriculture and international cooperation in this emerging field. Full article
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