Search Results (192)

The intense green coloration of Spirulina biomass limits its incorporation into food products despite its high nutritional and bioactive value. This study evaluated the heterotrophic fed-batch cultivation of Spirulina sp. LEB 18 using glucose and sodium acetate, aiming to modulate biomass color and preserve a nutritionally relevant composition for its application as a food ingredient. After 10 days, all heterotrophic cultures exhibited attenuation of the green coloration, with total color differences greater than ΔE > 7 relative to the controls. The reduction in chlorophyll a was consistent with the observed color changes, whereas phycocyanin and carotenoid contents did not differ significantly from the autotrophic controls. Cultivation supplemented with sodium acetate fed at 0.2 g L⁻¹ showed a protein composition similar to the control and was the condition that exhibited the greatest color attenuation (ΔE = 10.33) without a pronounced reduction in protein content. Cultures supplemented with glucose resulted in higher lipid and carbohydrate accumulation, reflecting the redirection of carbon toward energy storage compounds. The results demonstrate that heterotrophic cultivation of Spirulina sp. LEB 18 is a promising strategy to modulate biomass color and composition, expanding its applicability, particularly in food matrices where green coloration limits consumer acceptance. Full article

The integration of microalgae cultivation into biorefinery systems represents a promising strategy to enhance carbon dioxide (CO₂) sequestration and support sustainable biomass production for diverse biotechnological applications. This study reports the CO₂ fixation performance and biomass productivity of a two-stage photobioreactor (PBR) system employed for the continuous cultivation of Haematococcus pluvialis, utilizing biogenic CO₂ generated from a heterotrophic culture. The first stage (ST1) operated as an autotrophic chemostat (ST1 PBR) with variable dilution rates (0.18–1.00 d⁻¹), while the second stage (ST2) consisted of sequential high-irradiance columns that promoted biomass and carotenoid accumulation. The two-stage PBR (ST1 + ST2 PBR) achieved a maximum CO₂ assimilation capacity of 0.747g/L/d and up to 94% CO₂ fixation efficiency. The daily CO₂ assimilation rate reached 6.53 g/d, representing a 10% improvement compared with the single-stage system (ST1 PBR). The maximum overall biomass productivity reached 0.332 g/L/d when both PBR stages were operated together, whereas the second stage alone achieved up to 1.18 g/L/d under continuous operation and a maximum biomass concentration of 3.33 g/L during batch-induced carotenogenesis. Nutrient uptake analysis revealed an increasing fraction of unconsumed major nutrients with higher dilution rates. Continuous operation under high irradiance did not induce pigment accumulation, whereas batch mode successfully triggered carotenogenesis over 13 days, resulting in visible pigment production and high biomass yield. Overall, the two-stage PBR system demonstrated high CO₂ capture efficiency, enhanced biomass productivity, and operational flexibility, offering a scalable and sustainable approach for integrating microalgal cultivation into biorefineries while contributing to carbon mitigation and circular bioeconomy goals. Full article

Dryland soils of the Caspian region of western Kazakhstan are exposed to environmental stress, including drought, alkalinity, low soil organic matter content, and anthropogenic pressure. In this preliminary study, bacterial communities were investigated in 18 soil samples collected from six sampling groups across Makat (M1, M2), Isatay (I1, I2), and Beyneu (B1, B2) districts. Soil physicochemical properties were measured, and bacterial diversity was analyzed using 16S rRNA gene sequencing of the V3–V4 region. Community composition analysis indicated spatial heterogeneity among the sampled groups. M1 and I1 showed the highest taxon richness, whereas B2 contained the highest number of unique taxa. Genus-level profiles showed that B1 and M2 were mainly associated with Rubrobacter and related actinobacterial taxa; B2 contained higher proportions of Marinobacter, Tychonema, Qipengyuania, and Halomonas; and I2 was enriched with Antarcticibacterium, Salinimicrobium, Rhodococcus, Gillisia, Marinobacter, Dietzia, and Pontibacter. Correlation analysis showed that several bacterial taxa were associated with soil organic matter content, total nitrogen, total phosphorus, exchangeable cations, and pH, although the overall Mantel relationship between soil properties and community structure was not significant. FAPROTAX-based prediction indicated differences in putative heterotrophic, nitrogen-related, sulfur-related, and hydrocarbon-associated functional categories among sites. Because FAPROTAX predictions are based on taxonomic composition, these results should be interpreted only as putative functional potential and not as evidence of actual microbial metabolic activity. These findings suggest that the sampled Caspian dryland soils contain distinct bacterial assemblages and taxa with potential ecological relevance; however, their role in dryland soil resilience or bioremediation should be verified through future culture-based, metagenomic, and functional validation studies. Full article

The gut microbiota of fish plays a crucial role in nutrition, metabolism and immune regulation, and is highly sensitive to environmental stressors such as pesticide exposure. This study investigated the effects of emamectin benzoate (EMB) exposure on Asian stinging catfish (Heteropneustes fossilis) gut microbiota using an integrated culture-dependent and culture-independent approach to assess functional and taxonomic dysbiosis. Gut smear samples from control and EMB-treated fish at two sublethal concentrations (0.5 µg/L and 5 µg/L) were analyzed for major functional bacterial groups, including heterotrophic, lipid-hydrolysing, starch-hydrolysing, spore-forming, and Gram-negative bacteria and Pseudomonas spp., using standard plate count techniques. In parallel, microbial community composition and diversity were examined through 16S rRNA (V3–V4 region) gene amplicon sequencing followed by bioinformatic analysis. Culture-based results showed a significant decline in total heterotrophic bacteria and key functional groups in EMB-treated fish, indicating suppression of microbial metabolic activity and functional imbalance. Lipid-hydrolysing and starch-hydrolysing bacteria showed pronounced sensitivity to pesticide exposure, while spore-forming bacteria exhibited a marked reduction, suggesting compromised microbial resilience. Although Gram-negative bacteria declined overall, Pseudomonas spp. displayed a non-linear response, with an initial decrease, followed by partial recovery under higher exposure. Culture-independent analysis demonstrated reduced alpha diversity, altered community structure, and taxonomic shifts in EMB-treated fish. Pseudomonadota exhibited a distinct pattern characterized by decline at 0.5 µg/L and partial recovery at 5 µg/L, reflecting adaptive tolerance rather than restoration of microbial homeostasis. Overall, the combined evidence indicates pronounced EMB-induced gut dysbiosis at both functional and compositional levels. This study highlights the fish gut microbiome as a sensitive biomarker of stress and underscores the ecological risks associated with EMB in aquatic environments. Full article

Poterioochromonas is a typical mixotrophic chrysophyte that plays an important ecological role in natural aquatic environments and has received particular attention from morphological and ecological perspectives over the last few decades because of its peculiar mode of feeding and relevance for practical applications. However, the taxonomic classification of this genus remains controversial, and the true extent of its diversity remains largely unknown. Here, we use a complementary approach of culturing, morphological and phylogenetic analyses, and sequence database mining to address this issue. We collected 16 cultures of Poterioochromonas to determine the essential morphological characteristics and clarify the taxonomy and phylogeny of the genus. Our results confirmed that all Poterioochromonas strains produce lorica, which is the diagnostic character for the genus. We suggest that the shape of the lorica cup and the morphology of the cyst could be used as diagnostic characteristics to differentiate different species within the genus. Molecular phylogenetic analysis based on the SSU rDNA and rbcL gene sequences confirmed the monophyly of Poterioochromonas, which is subdivided into heterotrophic and mixotrophic clades. Comparative analysis of six molecular markers revealed that the COI gene is the most sensitive for distinguishing both inter- and intraspecific relationships. An exhaustive screening of the NCBI GenBank database and publicly available amplicon sequencing datasets revealed 100 SSU rDNA gene sequences for Poterioochromonas. The results showed that many soil-derived environmental sequences grouped with heterotrophic Poterioochromonas and indicated that the heterotrophic representatives of the genus are abundant in the soil environment. The results also revealed that many environmental sequences did not group with any reference sequences of known species, indicating that the genus Poterioochromonas is much more diverse than previously thought. This study contributes to a clearer taxonomic and distributional framework for Poterioochromonas, thereby facilitating future basic and applied research on this genus and similar mixotrophic chrysophytes. Full article

Polluted mangroves are ecologically sensitive habitats that provide ecosystem services. In a selected polluted forest of Simaisma, viable aerobic, halophilic, and heterotrophic hydrocarbon-degrading bacterial strains were isolated from both rhizosphere and non-rhizosphere regions. The chemical composition of sediment showed a clear distinction between the rhizosphere and non-rhizosphere sites, as well as coastal and non-coastal sediments, as per Principal Component Analysis (PCA) clustering. Anthracene, an indicator of oil pollution, was present along with vanadium, another marker of oil pollution. Through selective enrichment cultures, a total of 25 hydrocarbon-degrading bacterial strains were isolated, including Lysinibacillus xylanilyticus, Bacillus cereus, Lysinibacillus sphaericus, Pseudomonas stutzeri, Acinetobacter calcoaceticus, and Staphylococcus warneri. To link the adaptation of bacteria to sediment chemistry, nine B. cereus strains were investigated using their MALDI-TOF MS protein profiles combined with their dendrogram. The relationship between protein profiles of B. cereus strains with their biosurfactant production capabilities was explained by a tanglogram. The tanglegram suggests that biosurfactant production is an important functional trait in B. cereus, but it is not consistently reflected in the overall protein profile. This suggests that bacterial adaptation in the polluted mangrove sediments may involve changes at multiple cellular levels, including metabolic activity and variation in protein expression profiles. These findings confirm the involvement of mangrove-associated bacteria in the sustainability of mangrove forests by promoting bioremediation of oil pollution, thereby protecting coastal ecosystems and their environmental and socio-economic aspects. Full article

Macrobrachium nipponense is one of the major economic species in freshwater aquaculture in China. As an important component of aquaculture ecosystem, microorganisms participate in key processes such as material cycling and water quality regulation, exerting significant impacts on the cultured organisms. In this study, high-throughput sequencing of the 16S rRNA, 18S rRNA, and ITS regions was employed to comparatively analyze the characteristics of microbial communities before and during the cultivation period, combined with correlation analysis of environmental factors. The results showed that the dominant microbial groups in the prawn pond water were Proteobacteria, Cyanobacteria, Ascomycota, Basidiomycota, Chlorophyta, and Arthropoda. The microbial community structure differed significantly between the pond water during the culture period and the pre-culture external river baseline: manifested as an increase in the relative abundances of Cyanobacteria, Chytridiomycota, and zooplankton, and a decrease in the abundances of Ascomycota, Basidiomycota, and Chlorophyta. Analysis of LEfSe revealed that the low-nitrogen pond was enriched with taxa such as Muribaculaceae; the high-nitrogen pond was enriched with taxa such as Cyanobium_PCC-6307; and the control pond was enriched with taxa such as CL500-29_marine_group. Functional prediction indicated that heterotrophic metabolism-related functions dominated the microbial communities. The abundance of fungal pathogens was significantly higher in the low-nitrogen group, while potential pathogenic bacteria were enriched in the high-nitrogen group. Ammonia nitrogen is a core environmental factor associated with differences in microbial community structure. The findings of this study can provide theoretical references and data support for water quality optimization and the construction of healthy aquaculture models in freshwater shrimp and crab farming waters. Full article

Although numerous studies have focused on the potential application of heterotrophic nitrification–aerobic denitrification (HNAD) bacteria in wastewater treatment, research exploring their potential in aquaculture biofloc systems remains limited. In this study, a promising HNAD strain, identified as Stutzerimonas stutzeri MJ20, was isolated from mature biofloc. This strain efficiently utilized low-cost carbon sources (e.g., glucose) and small-molecule carbon sources (e.g., sodium acetate and sodium succinate). Under conditions with glucose as the carbon source, a carbon-to-nitrogen (C/N) ratio of 15, pH 6–9, temperature 25–35 °C, salinity 0–35‰, and shaker speed of 0–150 rpm, it achieved removal rates of 95–100% for NH₄⁺-N, NO₂⁻-N, and NO₃⁻-N at initial concentrations of 100 mg/L each. Even at higher concentrations (up to 200 mg/L NH₄⁺-N and 500 mg/L for both NO₂⁻-N and NO₃⁻-N), removal rates exceeded 99%. Under mixed nitrogen sources, strain MJ20 demonstrated efficient nitrogen removal, preferentially utilizing NH₄⁺-N, with only minimal and transient accumulation of nitrite and nitrate. Genomic analysis revealed that MJ20 carries key denitrification genes, including napA, nirS, norB and nosZ, and possesses complete pathways for nitrate reduction to nitrogen gas and ammonia assimilation, although typical autotrophic nitrification genes were not detected. Combined genomic data and autotrophic culture experiments indicated that, in addition to utilizing various organic carbon sources, the strain also exhibited certain autotrophic growth capabilities. Furthermore, MJ20 showed strong flocculation ability (flocculation rate > 96% within 16 h), sensitivity to multiple common antibiotics, and no toxicity to zebrafish, demonstrating favorable biosafety. In simulated seawater aquaculture wastewater with a C/N ratio of 5, it achieved a total nitrogen removal rate exceeding 94% within 72 h. These results indicate that strain MJ20 possesses comprehensive advantages, including efficient nitrogen removal, broad carbon source adaptability, strong environmental resilience, minimal accumulation of intermediate nitrogen products, excellent flocculation ability, and high biosafety. These traits highlight its potential for application in biofloc systems and in treating aquaculture tail water with a low C/N ratio. This study provides theoretical insights and practical guidance for screening HNAD bacteria suitable for biofloc systems. Full article

We evaluated the effect of our light-emitting diode (LED) light treatments (blue, peak at 468 nm; green, peak at 537 nm; red, peak at 630 nm; and white light) on the growth performance and serum lysozyme activity of the common carp Cyprinus carpio and bacterial communities in a closed recirculating system under an average power intensity of 1.29 ± 0.18 mW/cm² of LED light on the water surface of a circulating rearing system for 70 days. The specific growth rate, weight gain and K-factor were improved when carp were cultured under green or blue light. The specific lysozyme activity in the plasma of the common carp was significantly promoted under blue light compared to the green, white and red light conditions after 70 days. Compared to the other types of LED lights, the blue light treatment resulted in the lowest number of heterotrophic bacteria in the rearing water and the highest heterotrophic bacteria in the carp’s gut contents (both p < 0.05). The phyla Fusobacteria, Bacteroidetes, Tenericutes, Proteobacteria and Firmicutes were abundant in the carp’s gut contents after culturing with any of the four types of LED light. In short, the blue LED light can be considered a potential tool in sustainable aquaculture. Full article

Runting and stunting syndrome (RSS) has been reported worldwide in commercial aquaculture and is frequently observed in juvenile-rearing ponds of Apostichopus japonicus. The objective of this study was to use commercially cultured A. japonicus naturally affected by RSS under high-density culture conditions as the study subjects. Different nutritional additive treatments, including marine mud, effective microorganisms (EM; photosynthetic bacteria, lactic acid bacteria, yeasts, and actinomycetes), yeast, kelp powder, and fermented kelp powder, were applied, and growth performance during recovery, the activities of intestinal digestive enzymes (protease, alginate lyase and cellulase), and heterotrophic bacterial counts were systematically evaluated. The results showed that the recovery rate of RSS in A. japonicus decreased in the following order: the EM group (90.91 ± 1.15%), the fermented kelp group (90.91 ± 4.96%), the yeast group (81.82 ± 5.99%), the kelp group (72.73 ± 1.35%), the marine mud group (63.64 ± 1.41%), and the control group (54.55 ± 1.47%). Moreover, increased intestinal digestive enzyme activities, elevated heterotrophic bacterial counts, and a reduced relative abundance of Vibrio were identified as key factors associated with RSS recovery in A. japonicus, with the EM and fermented kelp groups showing the most pronounced effects. High-throughput sequencing further revealed that nutritional additive treatments differed in their effects on the intestinal microbial community structure of RSS-affected A. japonicus. At the phylum level, Bacillota (26.45–48.08%), Actinomycetota (13.96–44.99%), and Pseudomonadota (9.15–56.46%) were the dominant phyla in the intestine of A. japonicus. At the genus level, a lower relative abundance of Vibrio was associated with improved recovery, and groups with lower Vibrio levels generally exhibited better recovery outcomes; notably, the EM group showed the lowest relative abundance of Vibrio (1.37%). Overall, these community shifts may contribute to recovery by supporting potential energy supply, immune regulation, and functional restoration. Therefore, these findings provide new insights into the treatment of RSS in A. japonicus through the development of beneficial microbes and the targeted suppression of potential pathogens. Full article

Increasing demands for improved energy efficiency and resource recovery in wastewater management have driven intensified research on microalgal–bacterial consortia (M-BC). This technological approach represents one of the most promising and continuously evolving concepts for integrated wastewater treatment and energy recovery. M-BC systems exploit complementary processes, including photosynthesis, oxygen production, nutrient uptake by microalgae, as well as heterotrophic degradation of organic contaminants and CO₂ generation by bacteria. Laboratory- and pilot-scale studies demonstrate that such integration can substantially reduce energy demand while significantly improving technological performance. Metabolic synergy, metabolite exchange, intercellular communication, and the specific aggregate architecture collectively determine the stability and high productivity of these consortia. Depending on operational conditions, M-BC may occur as suspended cultures, biofilm-based systems, or granules, which differ in process characteristics and biomass recovery potential. Available evidence indicates that M-BC biomass can serve as a highly efficient substrate for anaerobic digestion (AD). The methane production potential of M-BC reaches 350–365 mL CH₄/gVS, and following pretreatment may increase to 530–560 mL CH₄/gVS, exceeding typical ranges reported for conventional sewage sludge. These values were obtained under specific process conditions and depend on biomass characteristics, consortium structure, inoculum type, and operational parameters; therefore, their generalisation should be interpreted with caution. However, practical implementation remains constrained by process-related barriers directly affecting AD performance, including extracellular polymeric substance (EPS)-mediated hydrolysis limitation and nitrogen-associated inhibition linked to low C/N ratios and ammonia accumulation. Additional challenges include seasonal variability in biomass composition and incomplete understanding of M-BC behaviour under anaerobic conditions, particularly at scale. This paper provides a comprehensive and integrative analysis of the structure and biochemistry of M-BC biomass, their ecological mechanisms, technological configurations, and current knowledge regarding their susceptibility to anaerobic digestion. The review identifies the key biological, chemical, and process-related barriers and highlights research directions required for future integration of M-BC into circular wastewater treatment systems and energy-oriented biomass valorisation. Full article

Traditional carriers play a major role in wastewater treatment worldwide due to their reliability, ease of production, well-established analytical methods, and strong treatment performance. Recent studies indicate that polyvinyl-alcohol-based microcarriers may surpass conventional media, as their smaller size, higher porosity, and increased specific surface area enable them to retain substantially more biomass within reactors. However, their practical application remains limited because fewer analytical methods and studies exist for these materials, largely due to their small dimensions and heat sensitivity, and their behaviour under industrial conditions—including their kinetics—has yet to be fully characterised and validated. This study aims to address these gaps by reviewing existing biomass measurement standards and highlighting their limitations when applied to microcarriers and by proposing alternative experimental approaches better suited for evaluating biomass on such sensitive yet high-capacity carriers. We present a set of experimental methods (still subject to further refinement) that demonstrate reliable performance with these materials, and to validate our approach, we quantified biomass in both in vitro systems and containerised-scale technologies, reaching up to 14 kg/m³ during winter and 8.7 kg/m³ in spring. Laboratory-scale experiments showed that both heterotrophic and autotrophic cultures can achieve high biomass levels of up to 21 kg/m³ and 16 kg/m³, respectively. Heterotrophs exhibited lower growth inhibition under shear stress, while autotrophs displayed a distinct shear-force niche around 0.09 µN within the reactor. Full article

Mafic mine tailings are highly resistant to bioleaching due to their silicate-rich composition, low sulfide content, and strong buffering capacity. This study aimed to assess the potential use of heterotrophic bioleaching to promote the release of metals from mafic tailings by evaluating the organic acid production and leaching capabilities of indigenous bacterial isolates and a known lactic acid producer, Lactiplantibacillus plantarum ATCC 8014. Indigenous acid-producing heterotrophic bacteria were isolated from a vanadium-titanium-bearing magnetite tailings in Québec, Canada, and screened for organic acid production in various culture media. The most active bacteria were L. plantarum and two isolates identified by their 16S rRNA gene as Enterococcus (CBGM-1C) and Acetobacter (BL-F) sp. They produced significant quantities of lactic acids, followed by acetic, citric, and gluconic acids during glucose metabolism, through fermentative or oxidative pathways. A two-step bioleaching process was implemented, consisting of an initial organic acid production phase followed by tailings leaching at 5% pulp density over 10 days at 30 °C. Metal solubilization and mineralogical analyses demonstrated strain-dependent and metal-specific mobilization, with zinc being the only element efficiently leached (up to ~74% recovery by L. plantarum). XRD analyses confirmed partial dissolution and reduced crystallinity of key silicate phases without secondary mineral formation. These findings indicate that heterotrophic leaching can selectively mobilize more labile metals such as Zn from alkaline, silicate-rich tailings, although its overall efficiency for refractory elements remains limited under the tested conditions. Full article

Heterotrophic nanoflagellates (HNANs) are central components of the microbial loop, transferring carbon from bacteria to higher trophic levels and facilitating nutrient recycling. While many HNANs are free-swimming, some exhibit enhanced feeding efficiency when attached to surfaces, including diatom frustules. Here, we describe the attachment behavior of a novel interception-feeding HNAN affiliated with the order Bicosoecida to centric diatoms common in North Carolina coastal waters. Using growth experiments, live observations, and time-lapse microscopy, we quantified attachment frequency and assessed its influence on diatom growth for three diatom species: Coscinodiscus sp., Odontella sp., and Rhizosolenia sp. HNAN attachment differed significantly among diatom taxa: Coscinodiscus sp. hosted the highest and most sustained numbers per frustule, whereas after normalizing for surface area, Rhizosolenia sp. exhibited the highest attachment efficiency. Diatom peak growth was 1.2 to 2.1-fold higher and occurred earlier in HNAN co-cultures than in controls, indicating microbial recycling by the HNAN stimulated growth. These findings highlight the nuanced ecological role attached HNANs might play as they exploit diatom-associated boundary layers to enhance bacterial encounter rates. The growth trajectories in our lab experiments suggests that attachment behavior in situ can play a role in driving diatom bloom dynamics and, therefore, play an important role for carbon cycling. Full article

Acid mine drainage (AMD) and acid-generating mine wastes exhibit low pH, high sulfate levels, and complex multi-metal loads that strain conventional treatment. Thermoacidophilic red algae of the order Cyanidiales, particularly Galdieria sulphuraria (G. sulphuraria), have attracted interest as a biological option because they tolerate extreme acidity and elevated temperatures, grow under low light in mixotrophic or heterotrophic modes, and display rapid metal binding at the cell surface. This review synthesizes about two decades of peer-reviewed work to clarify how G. sulphuraria can be deployed as a practical module within mine water treatment trains. We examine the mechanisms of biosorption and bioaccumulation and show how they map onto two distinct configurations. Processed freeze-dried biomass functions as a regenerable sorbent for rare earth elements (REEs) and selected transition metals in packed beds with acid elution for recovery. Living cultures serve as polishing units for divalent metals and, when present, nutrients or dissolved organics under low light. We define realistic operating windows centered on pH 2–5 and temperatures of approximately 25–45 °C, and we identify matrix effects that govern success, including competition from ferric iron and aluminum, turbidity and fouling risks, ionic strength from sulfate, and suppression of REE uptake by phosphate in living systems. Building on laboratory studies, industrial leachate tests, and ecosystem observations, we propose placing G. sulphuraria upstream of bulk neutralization and outline reporting practices that enable cross-site comparison. The goal is an actionable framework that reduces reagent use and sludge generation while enabling metal capture and potential recovery of valuable metals from mine-influenced waters. Full article