Search Results (20)

Priestia megaterium is a maize endophyte that may help the plant defend itself against bacterial and fungal pathogens. This study aimed to identify antimicrobials produced by two P. megaterium endophytes (FS10 and FS11) from maize and determine if seed coating with either strain could increase resistance to pathogens. Volatiles emitted by both isolates reduced the hyphal growth of fungi by 17–76%. Gas chromatography analysis found that each strain emitted isovaleric acid (IVA) and 3-methyl-1-butanol (3MB). Volatiles produced by each isolate inhibited bacterial growth, especially Clavibacter michiganensis ssp. michiganensis (Cmm). IVA killed all Cmm cells at 208 µL L⁻¹, while 3MB inhibited Cmm growth by 51% at 208 µL L⁻¹. Diluted cell-free extracts from FS10 and FS11 cultures stopped growth of Cmm, Erwinia amylovora and Ustilago maydis but did not arrest growth of Fusarium verticillioides. The treatment of corn seeds with FS10 or FS11 reduced leaf damage by 38–84% in young plants caused by Bipolaris maydis, Colletotrichum graminicola (Ces.) G.W. Wilson 1914, Exserohilum turcicum and Pythium sylvaticum. FS10 and FS11 isolates exuded volatile and soluble compounds that were more effective in slowing growth of bacteria than fungi. It is likely that corn seed treatment with FS10 and FS11 triggers induced systemic resistance, which mitigates leaf damage caused by maize pathogens. Full article

Our research group isolated an endophyte yeast from the endemic plant Echinopsis chiloensis. This yeast, identified as Naganishia sp, produces volatile organic compounds (VOC) with antifungal activity against Botrytis cinerea. Due to the need for alternative control methods for this pathogen, the effect of VOC on B. cinerea was analyzed. On the fourth day of cultivation, in the presence of VOCs, the mycelial growth of B. cinerea stopped. VOCs inhibited 32.8% of the conidia germination and reduced sporulation by 70.6%. These compounds promoted the formation of infection cushions. VOCs caused damage to the cell wall and plasma membrane in B. cinerea. On the other hand, the volatile compounds induced oxidative stress, and led to membrane lipid peroxidation after 16 and 24 h of incubation in the presence of VOCs, because an increased level of malondialdehyde content was observed. These compounds exerted a fungistatic effect on B. cinerea. The volatile compounds emitted by Naganishia sp were identified by gas chromatography coupled with mass spectrometry as 3-methylbutyl acetate, ethylbenzene, 1-ethyl-3-methylbenzene, 2-phenylethanol, 2-heptanone and (5E)-6,10-dimethylundeca-5,9-dien-2-one. The most abundant volatile compound, 2-phenylethanol, inhibited the mycelial growth of B. cinerea with an IC₅₀ value of 0.21 µL mL⁻¹. The effect of this pure compound was also fungistatic. Finally, it was shown that volatile compounds decreased the severity of B. cinerea infection in tomatoes and grapes by 64.7 and 43,1%, respectively. This is the first report identifying volatile compounds emitted by a Naganishia sp. and describing their mode of action against B. cinerea. Full article

Biallelic variants in USH2A are associated with retinitis pigmentosa (RP) and Type 2 Usher Syndrome (USH2), leading to impaired vision and, additionally, hearing loss in the latter. Although the introduction of next-generation sequencing into clinical diagnostics has led to a significant uplift in molecular diagnostic rates, many patients remain molecularly unsolved. It is thought that non-coding variants or variants of uncertain significance contribute significantly to this diagnostic gap. This study aims to demonstrate the clinical utility of the reverse transcription–polymerase chain reaction (RT-PCR)–Oxford Nanopore Technology (ONT) sequencing of USH2A mRNA transcripts from nasal epithelial cells to determine the splice-altering effect of candidate variants. Five affected individuals with USH2 or non-syndromic RP who had undergone whole genome sequencing were recruited for further investigation. All individuals had uncertain genotypes in USH2A, including deep intronic rare variants, c.8682-654C>G, c.9055+389G>A, and c.9959-2971C>T; a synonymous variant of uncertain significance, c.2139C>T; p.(Gly713=); and a predicted loss of function duplication spanning an intron/exon boundary, c.3812-3_3837dup p.(Met1280Ter). In silico assessment using SpliceAI provided splice-altering predictions for all candidate variants which were investigated using ONT sequencing. All predictions were found to be accurate; however, in the case of c.3812-3_3837dup, the outcome was a complex cryptic splicing pattern with predominant in-frame exon 18 skipping and a low level of exon 18 inclusion leading to the predicted stop gain. This study detected and functionally characterised simple and complex mis-splicing patterns in USH2A arising from previously unknown deep intronic variants and previously reported variants of uncertain significance, confirming the pathogenicity of the variants. Full article

This study is a further development of our “Proposal of a new double-nozzle technique for in-gas-jet laser resonance ionization spectroscopy” paper published in the journal Atoms earlier this year. Here, we propose equipping the double-nozzle technique with the RF-only funnel and RF-buncher placed in a gas-jet chamber at a 70 mm distance downstream of the double-nozzle exit. It allows for highly effective extraction into vacuum heavy ion beams, produced in two-steps laser resonance ionization in the argon supersonic jet. We explored the operation of this new full version of the double-nozzle technique through detailed gas dynamic and Monte Carlo trajectory simulations, with the results presented and discussed. In particular, our calculations showed that more than 80% of all nobelium-254 neutral atoms, extracted by argon flow from the gas-stopping cell, can then be extracted into vacuum in a form of pulsed ion beam having low transverse and longitudinal emittance. Full article

This paper proposes a new double-nozzle technique for in-gas-jet laser resonance ionization spectroscopy. We explored the functionality of this new technique through detailed gas dynamic and Monte Carlo atom-trajectory simulations, in which results are presented and discussed. The results of similar computer simulations for JetRIS setup (as a typical representative of the conventional in-gas-jet technique nowadays) are also presented and discussed. The direct comparison of calculation results for the proposed new technique with the conventional one shows that the double-nozzle technique has many advantages compared with the one used in the JetRIS setup at GSI for future high-resolution laser spectroscopic study of heaviest elements. To fully implement the proposed new technique in all existing (or under construction) setups for in-gas-jet laser resonance ionization spectroscopy, it will be enough to replace the used supersonic nozzle with the miniature double-nozzle device described in the paper. Full article

A safe and effective treatment for liver cancer is still elusive despite all attempts. Biomolecules produced from natural products and their derivatives are potential sources of new anticancer medications. This study aimed to investigate the anticancer potential of a Streptomyces sp. bacterial extract against diethylnitrosamine (DEN)–induced liver cancer in Swiss albino mice and explore the underlying cellular and molecular mechanisms. The ethyl acetate extract of a Streptomyces sp. was screened for its potential anticancer activities against HepG-2 using the MTT assay, and the IC₅₀ was also determined. Gas chromatography–mass spectrometric analysis was used to identify the chemical constituents of the Streptomyces extract. Mice were administered DEN at the age of 2 weeks, and from week 32 until week 36 (4 weeks), they received two doses of Streptomyces extract (25 and 50 mg/kg body weight) orally daily. The Streptomyces extract contains 29 different compounds, according to the GC-MS analysis. The rate of HepG-2 growth was dramatically reduced by the Streptomyces extract. In the mice model. Streptomyces extract considerably lessened the negative effects of DEN on liver functions at both doses. Alpha-fetoprotein (AFP) levels were significantly (p < 0.001) decreased, and P53 mRNA expression was increased, both of which were signs that Streptomyces extract was suppressing carcinogenesis. This anticancer effect was also supported by histological analysis. Streptomyces extract therapy additionally stopped DEN-induced alterations in hepatic oxidative stress and enhanced antioxidant activity. Additionally, Streptomyces extract reduced DEN-induced inflammation, as shown by the decline in interleukin-1 beta (IL-1β) and tumor necrosis factor-alpha (TNF-α) levels. Additionally, the Streptomyces extract administration dramatically boosted Bax and caspase-3 levels while decreasing Bcl-2 expressions in the liver according to the Immunohistochemistry examination. In summary, Streptomyces extract is reported here as a potent chemopreventive agent against hepatocellular carcinoma through multiple mechanisms, including inhibiting oxidative stress, cell apoptosis, and inflammation. Full article

In daily life, people are often receiving minor cuts due to carelessness, leaving wounds on the skin. If wound healing is interrupted and the healing process does not finish, pathogens can easily enter wounds and cause infection. Liquid bandages are a fast and convenient way to help stop the bleeding of superficial wounds. Moreover, antibacterial agents in liquid bandages can promote wound restoration and fight bacteria. Herein, a poly(vinyl alcohol) (PVA) liquid bandage incorporating copper iodide nanoparticles (CuI NPs) was developed. CuI NPs were synthesized through green synthesis using gallic acid (GA) as a reducing and capping agent. The sizes of the CuI NPs, which were dependent on the concentration of GA, were 41.45, 43.51 and 49.71 nm, with the concentrations of gallic acid being 0, 2.5 mM and 5.0 mM, respectively. CuI NPs were analyzed using FTIR, XRD and SEM and tested for peroxidase-like properties and antibacterial activity. Then, PVA liquid bandages were formulated with different concentrations of stock CuI suspension. The results revealed that PVA liquid bandages incorporating 0.190% CuI synthesized with 5.0 mM of GA can kill bacteria within 24 h and have no harmful effects on human fibroblast cells. Full article

Lately, the interest in long non-coding RNAs (lncRNAs) as potential drug targets and predictive markers in the context of HIV-1 has peaked, but their in vivo expression and regulation remains largely unexplored. Therefore, the present study examined lncRNA expression patterns during a clinical antiretroviral treatment interruption (ATI) trial. Peripheral blood mononuclear cells were isolated from ten patients at four timepoints: prior to ATI, 7–15 days after stop, at viral rebound and 3 months post antiretroviral therapy re-initiation. RNA was extracted and RT-qPCR on five known HIV-1-related lncRNAs (HEAL, MALAT1, NEAT1, GAS5 and NRON) was performed and correlated with HIV-1 and host marker expression. All lncRNAs correlated stronger with interferon stimulated genes (ISGs) than with HIV-1 reservoir and replication markers. However, one lncRNA, HEAL, showed significant upregulation at viral rebound during ATI compared to baseline and re-initiation of therapy (p = 0.0010 and p = 0.0094, respectively), following a similar viral-load-driven expression pattern to ISGs. In vitro knockdown of HEAL caused a significant reduction in HIV-1 infection levels, validating HEAL’s importance for HIV-1 replication. We conclude that the HIV-1-promoting lncRNA HEAL is upregulated at viral rebound during ATI, most likely induced by viral cues. Full article

Pathogenic variants in RPE65 lead to retinal diseases, causing a vision impairment. In this work, we investigated the pathomechanism behind the frequent RPE65 variant, c.11+5G>A. Previous in silico predictions classified this change as a splice variant. Our prediction using novel software’s suggested a 124-nt exon elongation containing a premature stop codon. This elongation was validated using midigenes-based approaches. Similar results were observed in patient-derived induced pluripotent stem cells (iPSC) and photoreceptor precursor cells. However, the splicing defect in all cases was detected at low levels and thereby does not fully explain the recessive condition of the resulting disease. Long-read sequencing discarded other rearrangements or variants that could explain the diseases. Subsequently, a more relevant model was employed: iPSC-derived retinal pigment epithelium (RPE) cells. In patient-derived iPSC-RPE cells, the expression of RPE65 was strongly reduced even after inhibiting a nonsense-mediated decay, contradicting the predicted splicing defect. Additional experiments demonstrated a cell-specific gene expression reduction due to the presence of the c.11+5G>A variant. This decrease also leads to the lack of the RPE65 protein, and differences in size and pigmentation between the patient and control iPSC-RPE. Altogether, our data suggest that the c.11+5G>A variant causes a cell-specific defect in the expression of RPE65 rather than the anticipated splicing defect which was predicted in silico. Full article

The ventilation of the middle-ear (ME) is achieved by the mucosa covering the bony cavities of this segment, which we have previously defined as consisting of two distinct epithelial areas, each representing an independent organ with characteristic function: the D-Organ and the F-Organ. The D-Organ corresponds to the epithelium covering the Antrum walls (belonging to the central cavities of the middle-ear) and the walls of mastoid and petrous cavities (peripheral cavities of the ME); it ensures the D-Function, the biophysical process comparable to that of energy-consuming ionic membrane pumps, works against electrical trans-membrane gradients to transfer gas molecules against trans-membrane and trans-cellular pressure gradients. The F-Organ corresponds to the epithelium covering the Protympanum, Tympanic Cavity and Aditus ad Antrum (central cavities of ME). The F-Function is represented by the permeability of cell membranes for respiratory gases. This is a general function of all cells and the size of the cellular membrane surface (luminal and basal) and the height of the cell (distance between the two membranes) determines the diffusion flow for each molecular type of gas. The present work aims to give an original point of view on middle-ear geometry and precedence over ME mucosa affliction or structural-anatomic type of the mastoid (pneumatic, pneumato-diploic, diploic, sclerotic). This type of approach to the problem has never been attempted since the two organs have never been previously defined. We aim to establish a clear topographic structure for these two organs within the reference system represented by the anatomy of ME cavities and to establish the reasons why the mastoid and petrous cavitary system grow or stop growing at a certain point in the life of an individual. Full article

The flow channel design of bipolar plates plays a significant role in the proton exchange membrane fuel cells operation, particularly in thermal and water management. The pursuit of low-pressure drop supply and flow field uniformity in PEM fuel cells has not stopped, resulting in numerous new bipolar plate flow channel designs. The biomimetic leaf vein shape-based flow channel and lung flow channel designs can significantly improve gas supply uniformity and reduce pressure drop. Therefore, we propose a snowflake-shaped bionic channel design by integrating the advantages of the leaf vein shape and lung shape channel. A 3D multi-physics fuel cell model is used to verify the feasibility and superiority of the bionic snowflake design in improving fuel cell performance, especially in reducing the pumping work. The local pressure distribution, oxygen distribution, water distribution, and current density distribution are used to reveal the enhancement mechanism of the new snowflake flow channel. The flow uniformity is further enhanced by using multi-objective (13 target parameters) and multi-parameter (18 independent variables) genetic algorithm optimization. The general goal of this work is to provide a new strategy for the thermal and water management of PEM fuel cells. Full article

RAdiation-Detected Resonance Ionization Spectroscopy (RADRIS) is a versatile method for highly sensitive laser spectroscopy studies of the heaviest actinides. Most of these nuclides need to be produced at accelerator facilities in fusion-evaporation reactions and are studied immediately after their production and separation from the primary beam due to their short half-lives and low production rates of only a few atoms per second or less. Only recently, the first laser spectroscopic investigation of nobelium ($Z=102$) was performed by applying the RADRIS technique in a buffer-gas-filled stopping cell at the GSI in Darmstadt, Germany. To expand this technique to other nobelium isotopes and for the search for atomic levels in the heaviest actinide element, lawrencium ($Z=103$), the sensitivity of the RADRIS setup needed to be further improved. Therefore, a new movable double-detector setup was developed, which enhances the overall efficiency by approximately 65% compared to the previously used single-detector setup. Further development work was performed to enable the study of longer-lived (t${}_{1/2}>1$ h) and shorter-lived nuclides (t${}_{1/2}<1$ s) with the RADRIS method. With a new rotatable multi-detector design, the long-lived isotope ${}^{254}$Fm (t${}_{1/2}=3.2 \mathrm{h}$) becomes within reach for laser spectroscopy. Upcoming experiments will also tackle the short-lived isotope ${}^{251}$No (t${}_{1/2}=0.8 \mathrm{s}$) by applying a newly implemented short RADRIS measurement cycle. Full article

Onion (Allium cepa L.) is an important bulb crop grown worldwide. Dormancy in bulbous plants is an important physiological state mainly regulated by a complex gene network that determines a stop of vegetative growth during unfavorable seasons. Limited knowledge on the molecular mechanisms that regulate dormancy in onion were available until now. Here, a comparison between uninfected and onion yellow dwarf virus (OYDV)-infected onion bulbs highlighted an altered dormancy in the virus-infected plants, causing several symptoms, such as leaf striping, growth reduction, early bulb sprouting and rooting, as well as a lower abscisic acid (ABA) level at the start of dormancy. Furthermore, by comparing three dormancy stages, almost five thousand four hundred (5390) differentially expressed genes (DEGs) were found in uninfected bulbs, while the number of DEGs was significantly reduced (1322) in OYDV-infected bulbs. Genes involved in cell wall modification, proteolysis, and hormone signaling, such as ABA, gibberellins (GAs), indole-3-acetic acid (IAA), and brassinosteroids (BRs), that have already been reported as key dormancy-related pathways, were the most enriched ones in the healthy plants. Interestingly, several transcription factors (TFs) were up-regulated in the uninfected bulbs, among them three genes belonging to the WRKY family, for the first time characterized in onion, were identified during dormancy release. The involvement of specific WRKY genes in breaking dormancy in onion was confirmed by GO enrichment and network analysis, highlighting a correlation between AcWRKY32 and genes driving plant development, cell wall modification, and division via gibberellin and auxin homeostasis, two key processes in dormancy release. Overall, we present, for the first time, a detailed molecular analysis of the dormancy process, a description of the WRKY-TF family in onion, providing a better understanding of the role played by AcWRKY32 in the bulb dormancy release. The TF co-expressed genes may represent targets for controlling the early sprouting in onion, laying the foundations for novel breeding programs to improve shelf life and reduce postharvest. Full article

Batteries and hydrogen constitute two of the most promising solutions for decarbonising international shipping. This paper presents the comparison between a battery and a proton-exchange membrane hydrogen fuel cell version of a high-speed catamaran ferry with a main focus on safety. The systems required for each version are properly sized and fitted according to the applicable rules, and their impact on the overall design is discussed. Hazards for both designs were identified; frequency and consequence indexes for them were input qualitatively, following Novel Technology Qualification and SOLAS Alternative Designs and Arrangements, while certain risk control options were proposed in order to reduce the risks of the most concerned accidental events. The highest ranked risks were analysed by quantitative risk assessments in PyroSim software. The gas dispersion analysis performed for the hydrogen version indicated that it is crucial for the leakage in the fuel cell room to be stopped within 1 s after being detected to prevent the formation of explosive masses under full pipe rupture of 33 mm diameter, even with 120 air changes per hour. For the battery version, the smoke/fire simulation in the battery room indicated that the firefighting system could achieve a 30% reduction in fire duration, with firedoors closed and ventilation shut, compared to the scenario without a firefighting system. Full article

In this paper, we theoretically explore the spectroscopic features of various one-dimensional photonic crystal (1D-PC)-based spectrally selective filters. The 1D-PC structure is composed of alternating layers of titanium dioxide (TiO₂) and graphene oxide (GO). Employing the transfer matrix method (TMM), the impacts of the incidence angle, the number, and thicknesses of TiO₂/GO layers in various 1D-PC stacks on the spectroscopic features of the filters are explored in detail. The proposed 1D-PC structures are designed for practical use for thermophotovoltaic (TPV) applications to act as filters that selectively transmit light below 1.78 μm to a GaSb photovoltaic cell, while light with longer wavelengths is reflected back to the source. The optimal design presented here consists of two Bragg quarter-wave 1D-PC filters with different central frequencies stacked to form a single structure. We demonstrate that our optimized 1D-PC filter exhibits a large omnidirectional stop band as well as a broad pass band and weak absorption losses. These features meet the fundamental exigencies to realize high-efficiency TPV devices. Additionally, we show that when integrated in a TPV system, our optimized filter leads to a spectral efficiency of 64%, a device efficiency of 39%, and a power density of 8.2 W/cm², at a source temperature of 1800 K. Full article