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24 pages, 2598 KB  
Article
SAM 2-Assisted Vision Transformer and Morphometric Feature Engineering for Pig Weight Estimation from RGB Images
by Yurui Li, Longhu Ma, Tingting Li, Shengyuan Zhi, Ran Peng, Yan Sun, Mengxin Chen and Jiong Mu
Appl. Sci. 2026, 16(11), 5708; https://doi.org/10.3390/app16115708 - 5 Jun 2026
Viewed by 430
Abstract
Accurate body-weight measurement is important for precision pig farming, but conventional weighing methods are labor-intensive and may disturb normal animal activity. Although three-dimensional sensing systems can provide reliable geometric information, their deployment cost limits large-scale application in commercial farms. This study proposes a [...] Read more.
Accurate body-weight measurement is important for precision pig farming, but conventional weighing methods are labor-intensive and may disturb normal animal activity. Although three-dimensional sensing systems can provide reliable geometric information, their deployment cost limits large-scale application in commercial farms. This study proposes a non-contact pig weight estimation framework based on standard RGB images. The framework combines SAM 2 foreground extraction with a transformer-based dorsal segmentation network to obtain stable body contours under complex farm conditions. Cross-covariance attention and local patch interaction modules are introduced to preserve both global body structure and local boundary details during segmentation. A hybrid loss function combining focal loss and label-distribution-aware margin loss is further adopted to address foreground-background imbalance. After segmentation, 17 morphometric features are extracted from the dorsal region and used for weight prediction with XGBoost regression. Experiments were conducted on the public PIGRGB-Weight dataset containing 12,476 RGB images from 124 pigs. The proposed method achieved a mean absolute error of 2.983 kg and an R2 value of 0.9891. Compared with a DeepLabV3+-based baseline under the same regression protocol, the proposed framework reduced the prediction error by 24.1%. The results indicate that improving dorsal segmentation quality can substantially enhance the stability of morphometric feature extraction from low-cost RGB images. Full article
(This article belongs to the Section Computing and Artificial Intelligence)
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16 pages, 1982 KB  
Article
Personalized Estimates of Brain Cortical Structural Similarity in Major Depressive Disorder: Evidence from a Multi-Site Neuroimaging Dataset
by Xuetian Sun, Yuhao Shen, Jiajia Zhu and Yongqiang Yu
Diagnostics 2026, 16(11), 1632; https://doi.org/10.3390/diagnostics16111632 - 26 May 2026
Viewed by 482
Abstract
Background: Major depressive disorder (MDD) is increasingly recognized as a highly heterogeneous disorder. Although the person-based similarity index (PBSI) provides a useful framework for characterizing individualized brain structural similarity, existing studies in MDD remain limited by either small samples or a lack [...] Read more.
Background: Major depressive disorder (MDD) is increasingly recognized as a highly heterogeneous disorder. Although the person-based similarity index (PBSI) provides a useful framework for characterizing individualized brain structural similarity, existing studies in MDD remain limited by either small samples or a lack of integration across different morphological features. Methods: We used structural MRI data from 1442 patients with MDD and 1277 healthy controls to calculate PBSI scores of cortical morphology measures based on cortical thickness (CT), cortical volume (CV), cortical surface area (SA), and sulcal depth (SD). Group comparisons of whole-brain PBSI and regional contributions to PBSI scores were then performed, and a subgroup analysis in 243 first-episode, drug-naive (FEDN) patients with MDD was further conducted. Results: Patients with MDD showed significant alterations in PBSI. Specifically, PBSI scores were significantly reduced for CT, CV, and SD, whereas no significant group difference was observed for SA in the main analysis. Analyses of regional contributions to PBSI further revealed significant between-group differences across multiple cortical regions. These alterations were mainly distributed in the default mode, ventral attention, and visual networks for CT; in the default mode, ventral attention, sensorimotor, and visual networks for CV; and in the default mode, dorsal attention, frontoparietal, and sensorimotor networks for SD. Similar patterns were also observed in the FEDN MDD subgroup. Conclusions: These findings provide neurobiological evidence for the marked structural heterogeneity of MDD and highlight the potential of PBSI as an individualized neuroimaging marker for more precise diagnosis and personalized intervention. Full article
(This article belongs to the Section Machine Learning and Artificial Intelligence in Diagnostics)
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22 pages, 1527 KB  
Article
Tomato Intake Improves Cognitive Performance and Modulates Functional Brain Networks in Healthy Adults: A Randomized Crossover Clinical Trial
by Ricardo López-Solís, Carolina Donat-Vargas, Patricia Ramírez-Carrasco, Rocío M. Gutiérrez-Romero, Maria Pérez, Magda Castellví, Beatriz Bosch, Camila Arancibia-Riveros, Alejandro Hinojosa-Moscoso, Carlos Laredo, Emma Muñoz-Moreno, Ana Maria Ruiz-Leon, Rosa Casas, Ramon Estruch, Anna Vallverdú-Queralt, Marina Corrado and Rosa M. Lamuela-Raventós
Antioxidants 2026, 15(5), 644; https://doi.org/10.3390/antiox15050644 - 19 May 2026
Cited by 1 | Viewed by 1628
Abstract
Tomatoes are the major dietary source of lycopene, a carotenoid that crosses the blood–brain barrier and exerts antioxidant and anti-inflammatory effects. However, the impact of tomato consumption on cognitive function in healthy adults remains unclear. This study assessed the effects of concentrated tomato [...] Read more.
Tomatoes are the major dietary source of lycopene, a carotenoid that crosses the blood–brain barrier and exerts antioxidant and anti-inflammatory effects. However, the impact of tomato consumption on cognitive function in healthy adults remains unclear. This study assessed the effects of concentrated tomato paste on cognitive performance and explored potential mechanisms, including brain-derived neurotrophic factor (BDNF) and functional brain connectivity. A randomized, two-period crossover trial (ClinicalTrials.gov: NCT05891977) was conducted in 47 healthy adults aged 40–55 years assigned to two 3-month interventions separated by a 1-month washout: (a) daily consumption of concentrated tomato paste (0.5 g/kg body weight) and (b) a lycopene-restricted control diet. Cognitive performance was evaluated using validated neuropsychological tests (d2-R, Face-Name Associative Memory Exam, Modified Wisconsin Card Sorting Test), alongside plasma lycopene and BDNF, and resting-state functional magnetic resonance imaging (fMRI). Forty-two participants completed the study. Tomato intake improved selective attention (concentration performance: +7.2 points; processing speed: +8.3 points) and associative memory (face-name matching: +0.8 points). Plasma BDNF showed a borderline increase with tomato intake (mean difference 15.2 ng/mL). Resting-state fMRI revealed changes in brain networks, including reduced connectivity in frontoparietal and auditory networks, contrasting with reductions in the dorsal attention network during the control period. These findings provide evidence that tomato consumption may support cognitive function and modulate brain connectivity in healthy middle-aged adults. Full article
(This article belongs to the Special Issue Role of Natural Antioxidants on Neuroprotection)
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28 pages, 1313 KB  
Review
Harnessing Spinal Cord Stimulation and Neuromodulation for Functional Restoration: From Pain Management to Motor Recovery
by Wende Li and Xiaoyu Xia
Brain Sci. 2026, 16(5), 476; https://doi.org/10.3390/brainsci16050476 - 29 Apr 2026
Viewed by 1018
Abstract
Spinal cord stimulation (SCS) has expanded beyond pain treatment, becoming a neuromodulatory method capable of recruiting spinal and supraspinal circuits involved in motor recovery. This review summarises mechanistic knowledge, supports engineering developments, and describes the changing clinical translation of SCS in rehabilitation. Mounting [...] Read more.
Spinal cord stimulation (SCS) has expanded beyond pain treatment, becoming a neuromodulatory method capable of recruiting spinal and supraspinal circuits involved in motor recovery. This review summarises mechanistic knowledge, supports engineering developments, and describes the changing clinical translation of SCS in rehabilitation. Mounting scientific data shows that SCS’s effects go beyond dorsal column modulation and may involve segmental networks that promote activity-dependent plasticity and sensorimotor pathway restoration, probably due to a combination of Hebbian and non-Hebbian mechanisms (synaptic potentiation, interneuronal reorganisation, and altered afferent–efferent coupling). More recent advances, such as bursts and the high-frequency paradigm, closed-loop control, and data-driven parameter optimisation methods, improve the precision, stability, and calibration of stimulation for each individual. By combining SCS with non-invasive forms of neuromodulation (TMS, tDCS, and peripheral nerve stimulation), one can potentially further intensify corticospinal plasticity and maintain improvements in functions. Spinal cord stimulation remains an established treatment for chronic neuropathic pain, including failed back surgery syndrome and complex regional pain syndrome. In recent years, however, increasing attention has been directed toward its potential role in motor recovery after spinal cord injury and stroke. Progress in this area is limited by patient heterogeneity, variability in outcome measures, the complexity of multimodal rehabilitation protocols, and regulatory and logistical constraints—particularly when adaptive or closed-loop systems are used. Current evidence suggests that motor-restorative applications of SCS should be interpreted cautiously and integrated within carefully designed rehabilitation programmes, with attention to patient selection and realistic expectations regarding the durability of the benefit. Full article
(This article belongs to the Special Issue At the Frontiers of Neurorehabilitation: 3rd Edition)
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19 pages, 11764 KB  
Article
HIV-Associated Microstructural Abnormalities in Default Mode, Executive Control, and Salience Networks: Insights from Tensor-Valued Diffusion Encoding
by Md Nasir Uddin, Abrar Faiyaz, Chase R. Figley, Xing Qiu, Miriam T. Weber and Giovanni Schifitto
Bioengineering 2026, 13(4), 413; https://doi.org/10.3390/bioengineering13040413 - 1 Apr 2026
Viewed by 902
Abstract
Cognitive impairment persists in people with HIV (PWH) despite effective combination antiretroviral therapy, possibly as a result of persistent alterations in white matter microstructural abnormalities in the brain. Noninvasive tensor-valued diffusion MRI (dMRI) is sensitive to microstructural integrity; thus, it may contribute to [...] Read more.
Cognitive impairment persists in people with HIV (PWH) despite effective combination antiretroviral therapy, possibly as a result of persistent alterations in white matter microstructural abnormalities in the brain. Noninvasive tensor-valued diffusion MRI (dMRI) is sensitive to microstructural integrity; thus, it may contribute to the understanding of HIV-associated cognitive impairment. In this exploratory cross-sectional study, 31 healthy controls (HCs) and 24 PWH underwent 3T MRI and neurocognitive assessment. Tensor-valued dMRI metrics, including microscopic fractional anisotropy (µFA) and isotropic, anisotropic, and total mean kurtosis (MKi, MKa, MKt), and conventional DTI and DKI metrics (FA, MD, and MK) were evaluated across six functionally defined brain networks. Compared with HCs, PWH exhibited reduced FA, µFA, and MKa in the dorsal default mode and anterior salience networks, along with increased MKi in the salience network and decreased MKi in the executive control network, with moderate effect sizes. Compared with HCs, PWH performed significantly worse on measures of learning, memory, and language, but showed no differences in executive function, attention, or processing speed. Additionally, significant associations and interactions between dMRI metrics and HIV status were observed, particularly for MKi and attention, executive function, and processing speed across the default mode, salience, and executive control networks. These preliminary findings underscore tensor-valued dMRI as a sensitive biomarker of network-specific neurocognitive vulnerability in HIV. Full article
(This article belongs to the Special Issue Neuroimaging Techniques and Applications in Neuroscience)
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22 pages, 4017 KB  
Article
The Effect of Music Stimulation on Resting-State Brain Functional Networks Following Exhaustive Endurance Exercise: An EEG Study
by Jing Fan, Bohan Li, Fujie Liu, Fanghao Jiao, Aiping Chi and Shuqi Yao
Brain Sci. 2026, 16(3), 258; https://doi.org/10.3390/brainsci16030258 - 25 Feb 2026
Cited by 1 | Viewed by 1560
Abstract
Objective: The purpose of this research is to examine how motivational music immediately impacts the brain’s functional connectivity patterns in male athletes following a single session of intense endurance exercise, utilizing resting-state electroencephalography (EEG) and brain network analysis methods. Methods: The study involved [...] Read more.
Objective: The purpose of this research is to examine how motivational music immediately impacts the brain’s functional connectivity patterns in male athletes following a single session of intense endurance exercise, utilizing resting-state electroencephalography (EEG) and brain network analysis methods. Methods: The study involved 34 healthy male athletes who were tasked with performing incremental cycling exercises until exhaustion, both with and without music. Their resting-state EEG was recorded before and after the exercise. Brain functional networks were analyzed in the theta, alpha, and beta frequency bands based on changes in phase locking value (PLV). Specifically, the study examined the central executive network (CEN), default mode network (DMN), salience network (SN), sensorimotor network (SMN), and dorsal attention network (DAN), assessing their topological properties using graph theory methods. Results: Music significantly prolonged the time to exhaustion. Across frequency bands, the music condition exhibited higher global and local efficiency compared with the no-music condition. Following exhaustion without music, beta-band connectivity significantly increased, suggesting compensatory hyper-synchronization under fatigue. In contrast, music led to reduced alpha- and beta-band global connectivity post-exercise, accompanied by selective strengthening of functionally relevant couplings, particularly between SMN and CEN, and enhanced DAN–DMN coordination. Additionally, music prevented maladaptive connectivity shifts observed under fatigue, including excessive SN–CEN coupling. Conclusions: Exhaustive exercise without music induces widespread beta-band hyper-connectivity, reflecting increased neural cost under central fatigue. Music, however, promotes a more efficient and selectively integrated network configuration, supporting the neural efficiency hypothesis. These findings provide neurophysiological evidence that music optimizes large-scale brain network organization under physical stress, thereby contributing to enhanced endurance performance. Full article
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15 pages, 941 KB  
Article
Risk for Adolescent Substance Use Initiation: Associations with Large-Scale Brain Network Recruitment During Emotional Inhibitory Control
by Julia E. Cohen-Gilbert, Jennifer T. Sneider, Emily N. Oot, Anna M. Seraikas, Eleanor M. Schuttenberg, Sion K. Harris, Lisa D. Nickerson and Marisa M. Silveri
Behav. Sci. 2025, 15(10), 1407; https://doi.org/10.3390/bs15101407 - 16 Oct 2025
Viewed by 1351
Abstract
As the brain continues to mature during adolescence, heightened impulsivity in emotional situations may increase the likelihood of initiating substance use. Functional magnetic resonance imaging (fMRI) was used to assess large-scale network activation during an emotional inhibitory control task (Go-NoGo). Participants were healthy, [...] Read more.
As the brain continues to mature during adolescence, heightened impulsivity in emotional situations may increase the likelihood of initiating substance use. Functional magnetic resonance imaging (fMRI) was used to assess large-scale network activation during an emotional inhibitory control task (Go-NoGo). Participants were healthy, substance-naïve adolescents aged 13–14 years (n = 56, 31 females) who were then followed for 3 years with quarterly substance use evaluations. During follow-up, 24 participants initiated substance use, while 32 remained substance-naïve. Network activation strength was extracted for the Negative NoGo > Neutral NoGo contrast in the left and right lateral frontoparietal networks (lL-FPN, rL-FPN) and the dorsal attention network (DAN) for each participant. The impact of network activation strength on substance use initiation was analyzed via survival analysis (Cox regression). Reduced activation strength of the lL-FPN was associated with significantly higher hazard of initiation of substance use (p = 0.008). No significant effects were observed for rL-FPN or DAN. Diminished engagement of the lL-FPN during inhibitory control in negative versus neutral emotional contexts was associated with earlier substance use initiation. This pattern of network activation may represent a neurobiological marker of self-regulation vulnerability, highlighting a potential target for early identification and prevention strategies during adolescence. Full article
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13 pages, 1270 KB  
Article
Functional Magnetic Resonance Imaging-Based Analysis of Functional Connectivity in Chronic Stress: A Comparison of Stress-Induced and Recovery States
by Mi-Hyun Choi and Jaehui Kim
Brain Sci. 2025, 15(10), 1025; https://doi.org/10.3390/brainsci15101025 - 23 Sep 2025
Viewed by 2593
Abstract
Background/Objectives: Chronic stress is associated with long-lasting alterations in brain function, particularly affecting the dynamic interactions between large-scale neural networks during stress and recovery. In this study, we compared changes in brain functional connectivity between states of stress induction and recovery in [...] Read more.
Background/Objectives: Chronic stress is associated with long-lasting alterations in brain function, particularly affecting the dynamic interactions between large-scale neural networks during stress and recovery. In this study, we compared changes in brain functional connectivity between states of stress induction and recovery in individuals with chronic stress and investigate the effects of chronic stress on functional brain networks. Methods: We used functional magnetic resonance imaging and ROI-to-ROI analysis to analyze functional connectivity in chronic stress (n = 36). The participants performed the Montreal Imaging Stress Task followed by a recovery phase. Results: The results showed that during the stress induction phase, connectivity between the salience and dorsal attention networks increased, demonstrating enhanced attention and emotional regulation. In contrast, during the recovery phase, connectivity between the default mode and the frontoparietal networks increased, demonstrating cognitive and emotional recovery after stress. Notably, we found that salience network activation continued during the recovery phase, suggesting that individuals with chronic stress may exhibit a continual state of alertness even after stress. Conclusions: Thus, our findings show that chronic stress can lead to the reconstruction of functional networks during the stress response and recovery, contributing to our understanding of the neurobiological correlates of stress-related impairment. Full article
(This article belongs to the Section Neurotechnology and Neuroimaging)
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12 pages, 942 KB  
Article
Functional Brain Connectivity During Stress Induction and Recovery: Normal Subjects
by Jaehui Kim and Mi-Hyun Choi
Appl. Sci. 2025, 15(17), 9714; https://doi.org/10.3390/app15179714 - 4 Sep 2025
Cited by 1 | Viewed by 1427
Abstract
This study aimed to compare the changes in brain functional connectivity between states of stress induction and recovery in mentally stable, healthy individuals to investigate the effects of stress on brain networks. We selected a stable group comprising 20 healthy adults with Perceived [...] Read more.
This study aimed to compare the changes in brain functional connectivity between states of stress induction and recovery in mentally stable, healthy individuals to investigate the effects of stress on brain networks. We selected a stable group comprising 20 healthy adults with Perceived Stress Scale scores of 0–13 points and a mean age of 24.4 ± 4.3 years. We used the Montreal Imaging Stress Task to induce stress and captured images of the brain using a 3T magnetic resonance imaging scanner. We analyzed the region of interest (ROI)-to-ROI connectivity and compared the differences in functional connectivity between the stress and recovery phases. In the stress state, we observed increased connectivity between the dorsal attention and sensorimotor networks and between the visual and default mode networks. In the recovery state, the default mode network became reactivated, and connectivity supporting self-referential thinking and stability was observed. The connectivities observed only in the recovery phase were Language.pSTG (R)—DefaultMode.LP (R) and DefaultMode.LP (R)—Visual.Lateral (R). Our findings provide important basic data for the development of stress management and recovery strategies. By assessing healthy individuals, our findings provide new perspectives on stress resilience in the brain. Full article
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32 pages, 3815 KB  
Article
Temporal Synchrony in Bodily Interaction Enhances the Aha! Experience: Evidence for an Implicit Metacognitive Predictive Processing Mechanism
by Jiajia Su and Haosheng Ye
J. Intell. 2025, 13(7), 83; https://doi.org/10.3390/jintelligence13070083 - 7 Jul 2025
Cited by 1 | Viewed by 1992
Abstract
Grounded in the theory of metacognitive prediction error minimization, this study is the first to propose and empirically validate the mechanism of implicit metacognitive predictive processing by which bodily interaction influences the Aha! experience. Three experimental groups were designed to manipulate the level [...] Read more.
Grounded in the theory of metacognitive prediction error minimization, this study is the first to propose and empirically validate the mechanism of implicit metacognitive predictive processing by which bodily interaction influences the Aha! experience. Three experimental groups were designed to manipulate the level of temporal synchrony in bodily interaction: Immediate Mirror Group, Delayed Mirror Group, and No-Interaction Control Group. A three-stage experimental paradigm—Prediction, Execution, and Feedback—was constructed to decompose the traditional holistic insight task into three sequential components: solution time prediction (prediction phase), riddle solving (execution phase), and self-evaluation of Aha! experience (feedback phase). Behavioral results indicated that bodily interaction significantly influenced the intensity of the Aha! experience, likely mediated by metacognitive predictive processing. Significant or marginally significant differences emerged across key measures among the three groups. Furthermore, fNIRS results revealed that low-frequency amplitude during the “solution time prediction” task was associated with the Somato-Cognitive Action Network (SCAN), suggesting its involvement in the early predictive stage. Functional connectivity analysis also identified Channel 16 within the reward network as potentially critical to the Aha! experience, warranting further investigation. Additionally, the high similarity in functional connectivity patterns between the Mirror Game and the three insight tasks implies that shared neural mechanisms of metacognitive predictive processing are engaged during both bodily interaction and insight. Brain network analyses further indicated that the Reward Network (RN), Dorsal Attention Network (DAN), and Ventral Attention Network (VAN) are key neural substrates supporting this mechanism, while the SCAN network was not consistently involved during the insight formation stage. In sum, this study makes three key contributions: (1) it proposes a novel theoretical mechanism—implicit metacognitive predictive processing; (2) it establishes a quantifiable, three-stage paradigm for insight research; and (3) it outlines a dynamic neural pathway from bodily interaction to insight experience. Most importantly, the findings offer an integrative model that bridges embodied cognition, enactive cognition, and metacognitive predictive processing, providing a unified account of the Aha! experience. Full article
(This article belongs to the Section Studies on Cognitive Processes)
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16 pages, 2853 KB  
Article
Detecting Lameness in Dairy Cows Based on Gait Feature Mapping and Attention Mechanisms
by Xi Kang, Junjie Liang, Qian Li and Gang Liu
Agriculture 2025, 15(12), 1276; https://doi.org/10.3390/agriculture15121276 - 13 Jun 2025
Cited by 4 | Viewed by 2965
Abstract
Lameness significantly compromises dairy cattle welfare and productivity. Early detection enables prompt intervention, enhancing both animal health and farm efficiency. Current computer vision approaches often rely on isolated lameness feature quantification, disregarding critical interdependencies among gait parameters. This limitation is exacerbated by the [...] Read more.
Lameness significantly compromises dairy cattle welfare and productivity. Early detection enables prompt intervention, enhancing both animal health and farm efficiency. Current computer vision approaches often rely on isolated lameness feature quantification, disregarding critical interdependencies among gait parameters. This limitation is exacerbated by the distinct kinematic patterns exhibited across lameness severity grades, ultimately reducing detection accuracy. This study presents an integrated computer vision and deep-learning framework for dairy cattle lameness detection and severity classification. The proposed system comprises (1) a Cow Lameness Feature Map (CLFM) model extracting holistic gait kinematics (hoof trajectories and dorsal contour) from walking sequences, and (2) a DenseNet-Integrated Convolutional Attention Module (DCAM) that mitigates inter-individual variability through multi-feature fusion. Experimental validation utilized 3150 annotated lameness feature maps derived from 175 Holsteins under natural walking conditions, demonstrating robust classification performance. The classification accuracy of the method for varying degrees of lameness was 92.80%, the sensitivity was 89.21%, and the specificity was 94.60%. The detection of healthy and lameness dairy cows’ accuracy was 99.05%, the sensitivity was 100%, and the specificity was 98.57%. The experimental results demonstrate the advantage of implementing lameness severity-adaptive feature weighting through hierarchical network architecture. Full article
(This article belongs to the Special Issue Computer Vision Analysis Applied to Farm Animals)
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16 pages, 4737 KB  
Article
Co-Community Network Analysis Reveals Alterations in Brain Networks in Alzheimer’s Disease
by Xiaodong Wang, Zhaokai Zhang, Lingli Deng and Jiyang Dong
Brain Sci. 2025, 15(5), 517; https://doi.org/10.3390/brainsci15050517 - 18 May 2025
Cited by 2 | Viewed by 1825
Abstract
Background: Alzheimer’s disease (AD) is a common neurodegenerative disease. Functional magnetic resonance imaging (fMRI) can be used to measure the temporal correlation of blood-oxygen-level-dependent (BOLD) signals in the brain to assess the brain’s intrinsic connectivity and capture dynamic changes in the brain. [...] Read more.
Background: Alzheimer’s disease (AD) is a common neurodegenerative disease. Functional magnetic resonance imaging (fMRI) can be used to measure the temporal correlation of blood-oxygen-level-dependent (BOLD) signals in the brain to assess the brain’s intrinsic connectivity and capture dynamic changes in the brain. In this study, our research goal is to investigate how the brain network structure, as measured by resting-state fMRI, differs across distinct physiological states. Method: With the research goal of addressing the limitations of BOLD signal-based brain networks constructed using Pearson correlation coefficients, individual brain networks and community detection are used to study the brain networks based on co-community probability matrices (CCPMs). We used CCPMs and enrichment analysis to compare differences in brain network topological characteristics among three typical brain states. Result: The experimental results indicate that AD patients with increasing disease severity levels will experience the isolation of brain networks and alterations in the topological characteristics of brain networks, such as the Somatomotor Network (SMN), dorsal attention network (DAN), and Default Mode Network (DMN). Conclusion: This work suggests that using different data-driven methods based on CCPMs to study alterations in the topological characteristics of brain networks would provide better information complementarity, which can provide a novel analytical perspective for AD progression and a new direction for the extraction of neuro-biomarkers in the early diagnosis of AD. Full article
(This article belongs to the Special Issue Understanding the Functioning of Brain Networks in Health and Disease)
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16 pages, 1882 KB  
Article
Brain Network Abnormalities in Obsessive–Compulsive Disorder: Insights from Edge Functional Connectivity Analysis
by Yongwang Xu, Hongfei Liu, Haiyan Liu, Defeng Lin, Sipeng Wu and Ziwen Peng
Behav. Sci. 2025, 15(4), 488; https://doi.org/10.3390/bs15040488 - 8 Apr 2025
Cited by 3 | Viewed by 5853
Abstract
Functional differences in key brain networks, including the dorsal attention network (DAN), control network (CN), and default mode network (DMN), have been identified in individuals with obsessive–compulsive disorder (OCD). However, the precise nature of these differences remains unclear. In this study, we further [...] Read more.
Functional differences in key brain networks, including the dorsal attention network (DAN), control network (CN), and default mode network (DMN), have been identified in individuals with obsessive–compulsive disorder (OCD). However, the precise nature of these differences remains unclear. In this study, we further explored these differences and validated previous findings using a novel edge functional connectivity (eFC) approach, which enables a more refined analysis of brain network interaction. By employing this advanced method, we sought to gain deeper insights into FC alterations that may underlie the pathology of OCD. We collected data during movie watching from 44 patients with OCD and 33 healthy controls (HCs). The two-sample t test was used to assess differences in entropy between the DAN, CN, and DMN between groups. The analysis was performed with control for potentially confounding variables to ensure the robustness of the findings. Significant differences in network entropy were found between the OCD and HC groups. Relative to HCs, patients with OCD showed significantly reduced entropy in the DAN and increased entropy in the CN and DMN. The decreased entropy in the DAN and increased entropy in the CN and DMN observed in this study may be related to the core symptoms of OCD, such as attention deficit, impaired cognitive control, and self-referential thinking. These results provide valuable insights into the neurobiological mechanisms of OCD and highlight the potential of network entropy as a biomarker for the disorder. Future research should further explore the relationship between these network changes and the severity of OCD symptoms, as well as assess their implications for the development of treatment strategies. Full article
(This article belongs to the Section Experimental and Clinical Neurosciences)
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17 pages, 7312 KB  
Article
Altered Hemispheric Asymmetry of Functional Hierarchy in Schizophrenia
by Yi Zhen, Hongwei Zheng, Yi Zheng, Zhiming Zheng, Yaqian Yang and Shaoting Tang
Brain Sci. 2025, 15(3), 313; https://doi.org/10.3390/brainsci15030313 - 16 Mar 2025
Cited by 3 | Viewed by 3112
Abstract
Background/Objectives: Schizophrenia is a severe psychiatric disorder characterized by deficits in perception and advanced cognitive functions. Prior studies have reported abnormal lateralization in cortical morphology and functional connectivity in schizophrenia. However, it remains unclear whether schizophrenia affects hemispheric asymmetry in the hierarchical organization [...] Read more.
Background/Objectives: Schizophrenia is a severe psychiatric disorder characterized by deficits in perception and advanced cognitive functions. Prior studies have reported abnormal lateralization in cortical morphology and functional connectivity in schizophrenia. However, it remains unclear whether schizophrenia affects hemispheric asymmetry in the hierarchical organization of functional connectome. Methods: Here, we apply a gradient mapping framework to the hemispheric functional connectome to estimate the first three gradients, which characterize unimodal-to-transmodal, visual-to-somatomotor, and somatomotor/default mode-to-multiple demand hierarchy axes. We then assess between-group differences in intra- and inter-hemispheric asymmetries of these three functional gradients. Results: We find that, compared to healthy controls, patients with schizophrenia exhibit significantly altered hemispheric asymmetry in functional gradient across multiple networks, including the dorsal attention, ventral attention, visual, and control networks. Region-level analyses further reveal that patients with schizophrenia show significantly abnormal hemispheric gradient asymmetries in several cortical regions in the dorsal prefrontal gyrus, medial superior frontal gyrus, and somatomotor areas. Lastly, we find that hemispheric asymmetries in functional gradients can differentiate between patients and healthy controls and predict the severity of positive symptoms in schizophrenia. Conclusions: Collectively, these findings suggest that schizophrenia is associated with altered hemispheric asymmetry in functional hierarchy, providing novel perspectives for understanding the atypical brain lateralization in schizophrenia. Full article
(This article belongs to the Section Neuropsychiatry)
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26 pages, 11478 KB  
Article
Understanding Altered Dynamics in Cocaine Use Disorder Through State Transitions Mediated by Artificial Perturbations
by Yi Zheng, Yaqian Yang, Yi Zhen, Xin Wang, Longzhao Liu, Hongwei Zheng and Shaoting Tang
Brain Sci. 2025, 15(3), 263; https://doi.org/10.3390/brainsci15030263 - 28 Feb 2025
Cited by 2 | Viewed by 2365
Abstract
Background/Objectives: Cocaine use disorder (CUD) poses a worldwide health challenge, with severe consequences for brain function. However, the phase dynamics underlying CUD and the transitions between CUD and health remain poorly understood. Methods: Here, we used resting-state functional magnetic resonance imaging [...] Read more.
Background/Objectives: Cocaine use disorder (CUD) poses a worldwide health challenge, with severe consequences for brain function. However, the phase dynamics underlying CUD and the transitions between CUD and health remain poorly understood. Methods: Here, we used resting-state functional magnetic resonance imaging (fMRI) data from 43 CUD patients and 45 healthy controls (HCT). We performed empirical analysis to identify phase-coherence states and compared their probabilities of occurrence between conditions. To further explore the underlying mechanism, we employed computational modeling to replicate the observed state probabilities for each condition. These generated whole-brain models enabled us to simulate external perturbations and identify optimal brain regions mediating transitions between HCT and CUD. Results: We found that CUD was associated with a reduced occurrence probability of the state dominated by the default mode network (DMN). Perturbing the nucleus accumbens, thalamus, and specific regions within the default mode, limbic and frontoparietal networks drives transitions from HCT to CUD, while perturbing the hippocampus and specific regions within the visual, dorsal attention, and DMN facilitates a return from CUD to HCT. Conclusions: This study revealed altered DMN-related dynamics in CUD from the phase perspective and provides potential regions critical for state transitions. The results contribute to understanding the pathogenesis of CUD and the development of therapeutic stimulation strategies. Full article
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