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20 pages, 8429 KiB  
Article
Altitude and Temperature Drive Spatial and Temporal Changes in Vegetation Cover on the Eastern Tibetan Plateau
by Yu Feng, Hongjin Zhu, Xiaojuan Zhang, Feilong Qin, Peng Ye, Pengtao Niu, Xueman Wang and Songlin Shi
Earth 2025, 6(3), 92; https://doi.org/10.3390/earth6030092 (registering DOI) - 6 Aug 2025
Abstract
The Tibetan Plateau (TP) is experiencing higher warming rates than elsewhere, which may affect regional vegetation growth. Particularly on the Eastern Tibetan Plateau (ETP), where the topography is diverse and rich in biodiversity, it is necessary to clarify the drivers of climate and [...] Read more.
The Tibetan Plateau (TP) is experiencing higher warming rates than elsewhere, which may affect regional vegetation growth. Particularly on the Eastern Tibetan Plateau (ETP), where the topography is diverse and rich in biodiversity, it is necessary to clarify the drivers of climate and topography on vegetation cover. In this research, we selected the Shaluli Mountains (SLLM) in the ETP as the study area, monitored the spatial and temporal dynamics of the regional vegetation cover using remote sensing methods, and quantified the drivers of vegetation change using Geodetector (GD). The results showed a decreasing trend in annual precipitation (PRE) (−2.4054 mm/year) and the Palmer Drought Severity Index (PDSI) (−0.1813/year) in the SLLM. Annual maximum temperature (TMX) on the spatial and temporal scales showed an overall increasing trend, and the regional climate tended to become warmer and drier. Since 2000, fractional vegetation cover (FVC) has shown a fluctuating upward trend, with an average value of 0.6710, and FVC has spatially shown a pattern of “low in the middle and high in the surroundings”. The areas with non-significant increases (p > 0.05) and significant increases (p < 0.05) in FVC accounted for 46.03% and 5.76% of the SLLM. Altitude (q = 0.3517) and TMX (q = 0.3158) were the main drivers of FVC changes. As altitude and TMX increased, FVC showed a trend of increasing and then decreasing. The results of this study help us to clarify the influence of climate and topography on the vegetation ecosystem of the ETP and provide a scientific basis for regional biodiversity conservation and sustainable development. Full article
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24 pages, 3176 KiB  
Article
Influence of Seasonality and Pollution on the Presence of Antibiotic Resistance Genes and Potentially Pathogenic Bacteria in a Tropical Urban River
by Kenia Barrantes-Jiménez, Bradd Mendoza-Guido, Eric Morales-Mora, Luis Rivera-Montero, José Montiel-Mora, Luz Chacón-Jiménez, Keilor Rojas-Jiménez and María Arias-Andrés
Antibiotics 2025, 14(8), 798; https://doi.org/10.3390/antibiotics14080798 - 5 Aug 2025
Abstract
Background/Objectives: This study examines how seasonality, pollution, and sample type (water and sediment) influence the presence and distribution of antibiotic resistance genes (ARGs), with a focus on antibiotic resistance genes (ARGs) located on plasmids (the complete set of plasmid-derived sequences, including ARGs) in [...] Read more.
Background/Objectives: This study examines how seasonality, pollution, and sample type (water and sediment) influence the presence and distribution of antibiotic resistance genes (ARGs), with a focus on antibiotic resistance genes (ARGs) located on plasmids (the complete set of plasmid-derived sequences, including ARGs) in a tropical urban river. Methods: Samples were collected from three sites along a pollution gradient in the Virilla River, Costa Rica, during three seasonal campaigns (wet 2021, dry 2022, and wet 2022). ARGs in water and sediment were quantified by qPCR, and metagenomic sequencing was applied to analyze chromosomal and plasmid-associated resistance profiles in sediments. Tobit and linear regression models, along with multivariate ordination, were used to assess spatial and seasonal trends. Results: During the wet season of 2021, the abundance of antibiotic resistance genes (ARGs) such as sul-1, intI-1, and tetA in water samples decreased significantly, likely due to dilution, while intI-1 and tetQ increased in sediments, suggesting particle-bound accumulation. In the wet season 2022, intI-1 remained low in water, qnrS increased, and sediments showed significant increases in tetQ, tetA, and qnrS, along with decreases in sul-1 and sul-2. Metagenomic analysis revealed spatial differences in plasmid-associated ARGs, with the highest abundance at the most polluted site (Site 3). Bacterial taxa also showed spatial differences, with greater plasmidome diversity and a higher representation of potential pathogens in the most contaminated site. Conclusions: Seasonality and pollution gradients jointly shape ARG dynamics in this tropical river. Plasmid-mediated resistance responds rapidly to environmental change and is enriched at polluted sites, while sediments serve as long-term reservoirs. These findings support the use of plasmid-based monitoring for antimicrobial resistance surveillance in aquatic systems. Full article
(This article belongs to the Special Issue Origins and Evolution of Antibiotic Resistance in the Environment)
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17 pages, 1388 KiB  
Article
Invertebrate Assemblages in Some Saline and Soda Lakes of the Kulunda Steppe: First Regional Assessment and Ecological Implications
by Larisa Golovatyuk, Timur Kanapatskiy, Olga Samylina, Nikolay Pimenov, Larisa Nazarova and Anna Kallistova
Water 2025, 17(15), 2330; https://doi.org/10.3390/w17152330 - 5 Aug 2025
Abstract
The taxonomic composition and structure of invertebrate assemblages in five lakes from the Kulunda steppe, located in an arid region of southwestern Siberia (Russia), were studied. The lakes varied greatly in their total salinity (5 to 304 g L−1) and carbonate [...] Read more.
The taxonomic composition and structure of invertebrate assemblages in five lakes from the Kulunda steppe, located in an arid region of southwestern Siberia (Russia), were studied. The lakes varied greatly in their total salinity (5 to 304 g L−1) and carbonate alkalinity (0.03 to 4.03 mol-eq L−1). The invertebrate fauna was characterized by low diversity. Only five taxa of macrozoobenthos and two taxa of planktonic invertebrates were identified. As water salinity increased, the taxonomic diversity of the studied lakes decreased, and at salinities > 276 g L−1, monodominant assemblages were formed. The high numbers and biomass of aquatic organism provide a rich food supply for native and migratory waterfowl. The low taxonomic diversity of the invertebrate assemblages of the lakes makes them vulnerable to any negative external impact. The climate in the Kulunda steppe demonstrates a long-term aridization trend. If this continues in the future, then over time, this may lead to the gradual salinization of lakes and a further decrease in the taxonomic diversity of hydrobiological assemblages. This emphasizes the ecological importance of the studied territory and the necessity for its inclusion in the list of sites protected by the Ramsar Convention. Full article
(This article belongs to the Section Biodiversity and Functionality of Aquatic Ecosystems)
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12 pages, 225 KiB  
Article
Factors Associated with Perceived Racial Discrimination While Receiving Medical Care in the United States
by Elizabeth Ayangunna, Kingsley Kalu, Bushra Shah, Indira Karibayeva and Gulzar Shah
Healthcare 2025, 13(15), 1906; https://doi.org/10.3390/healthcare13151906 - 5 Aug 2025
Abstract
Background: Health equity can only be achieved when every individual has access to quality healthcare without fear of being discriminated against. This study analyzed the sociodemographic characteristics associated with self-reported racial discrimination when receiving medical care in the United States. Methods: This quantitative [...] Read more.
Background: Health equity can only be achieved when every individual has access to quality healthcare without fear of being discriminated against. This study analyzed the sociodemographic characteristics associated with self-reported racial discrimination when receiving medical care in the United States. Methods: This quantitative cross-sectional study utilized the 2022 National Trends Survey 6. We performed a logistic regression analysis using 6102 survey responses from study participants who answered the question about perceived discrimination. Results: Older adults aged 75 years and above had significantly lower odds of reporting perceived discrimination when receiving medical care compared to those aged 18–34 years (AOR = 0.24; 95% CI: 0.10–0.58). The odds of reporting perceived discrimination were significantly higher among non-Hispanic Blacks (AOR = 7.30; 95% CI: 4.48–11.88), Hispanics (AOR = 3.56; 95% CI: 2.45–5.17), non-Hispanic Asians (AOR = 5.95; 95% CI: 2.25–15.73), and individuals identifying as non-Hispanic Other (AOR = 10.91; 95% CI: 5.42–21.98), compared to non-Hispanic Whites. Compared to individuals from households earning less than USD 20,000, the odds of reporting perceived discrimination when receiving medical care were significantly lower among individuals from households earning between USD 50,000 and <USD 75,000 (AOR = 0.42; 95% CI: 0.23–0.78) and those earning USD 75,000 or more (AOR = 0.43; 95% CI: 0.22–0.83). Conclusions: Despite having a multicultural and ethnically diverse population, racial discrimination persists in the United States and has become a barrier to achieving health equity. Health organizations should implement policies that ensure health workers attend mandatory anti-racism training. Full article
24 pages, 9834 KiB  
Article
Vegetation Succession Dynamics in the Deglaciated Area of the Zepu Glacier, Southeastern Tibet
by Dan Yang, Naiang Wang, Xiao Liu, Xiaoyang Zhao, Rongzhu Lu, Hao Ye, Xiaojun Liu and Jinqiao Liu
Forests 2025, 16(8), 1277; https://doi.org/10.3390/f16081277 - 4 Aug 2025
Viewed by 129
Abstract
Bare land exposed by glacier retreat provides new opportunities for ecosystem development. Investigating primary vegetation succession in deglaciated regions can provide significant insights for ecological restoration, particularly for future climate change scenarios. Nonetheless, research on this topic in the Qinghai–Tibet Plateau has been [...] Read more.
Bare land exposed by glacier retreat provides new opportunities for ecosystem development. Investigating primary vegetation succession in deglaciated regions can provide significant insights for ecological restoration, particularly for future climate change scenarios. Nonetheless, research on this topic in the Qinghai–Tibet Plateau has been exceedingly limited. This study aimed to investigate vegetation succession in the deglaciated area of the Zepu glacier during the Little Ice Age in southeastern Tibet. Quadrat surveys were performed on arboreal communities, and trends in vegetation change were assessed utilizing multi-year (1986–2024) remote sensing data. The findings indicate that vegetation succession in the Zepu glacier deglaciated area typically adheres to a sequence of bare land–shrub–tree, divided into four stages: (1) shrub (species include Larix griffithii Mast., Hippophae rhamnoides subsp. yunnanensis Rousi, Betula utilis D. Don, and Populus pseudoglauca C. Wang & P. Y. Fu); (2) broadleaf forest primarily dominated by Hippophae rhamnoides subsp. yunnanensis Rousi; (3) mixed coniferous–broadleaf forest with Hippophae rhamnoides subsp. yunnanensis Rousi and Populus pseudoglauca C. Wang & P. Y. Fu as the dominant species; and (4) mixed coniferous–broadleaf forest dominated by Picea likiangensis (Franch.) E. Pritz. Soil depth and NDVI both increase with succession. Species diversity is significantly higher in the third stage compared to other successional stages. In addition, soil moisture content is significantly greater in the broadleaf-dominated communities than in the conifer-dominated communities. An analysis of NDVI from 1986 to 2024 reveals an overall positive trend in vegetation recovery in the area, with 93% of the area showing significant vegetation increase. Temperature is the primary controlling factor for this recovery, showing a positive correlation with vegetation cover. The results indicate that Key ecological indicators—including species composition, diversity, NDVI, soil depth, and soil moisture content—exhibit stage-specific patterns, reflecting distinct phases of primary succession. These findings enhance our comprehension of vegetation succession in deglaciated areas and their influencing factors in deglaciated areas, providing theoretical support for vegetation restoration in climate change. Full article
(This article belongs to the Section Forest Inventory, Modeling and Remote Sensing)
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31 pages, 2983 KiB  
Review
Sustainable Management of Willow Forest Landscapes: A Review of Ecosystem Functions and Conservation Strategies
by Florin Achim, Lucian Dinca, Danut Chira, Razvan Raducu, Alexandru Chirca and Gabriel Murariu
Land 2025, 14(8), 1593; https://doi.org/10.3390/land14081593 - 4 Aug 2025
Viewed by 160
Abstract
Willow stands (Salix spp.) are an essential part of riparian ecosystems, as they sustain biodiversity and provide bioenergy solutions. The present review synthesizes the global scientific literature about the management of willow stands. In order to achieve this goal, we used a [...] Read more.
Willow stands (Salix spp.) are an essential part of riparian ecosystems, as they sustain biodiversity and provide bioenergy solutions. The present review synthesizes the global scientific literature about the management of willow stands. In order to achieve this goal, we used a dual approach combining bibliometric analysis with traditional literature review. As such, we consulted 416 publications published between 1978 and 2024. This allowed us to identify key species, ecosystem services, conservation strategies, and management issues. The results we have obtained show a diversity of approaches, with an increase in short-rotation coppice (SRC) systems and the multiple roles covered by willow stands (carbon sequestration, biomass production, riparian restoration, and habitat provision). The key trends we have identified show a shift toward topics such as climate resilience, ecological restoration, and precision forestry. This trend has become especially pronounced over the past decade (2014–2024), as reflected in the increasing use of these keywords in the literature. However, as willow systems expand in scale and function—from biomass production to ecological restoration—they also raise complex challenges, including invasive tendencies in non-native regions and uncertainties surrounding biodiversity impacts and soil carbon dynamics over the long term. The present review is a guide for forest policies and, more specifically, for future research, linking the need to integrate and use adaptive strategies in order to maintain the willow stands. Full article
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23 pages, 2353 KiB  
Article
Seaweeds of the Israeli Mediterranean Sea: Nutritional and Biotechnological Potential Through Seasonal and Species Variation
by Doron Yehoshua Ashkenazi, Félix L. Figueroa, Julia Vega, Shoshana Ben-Valid, Guy Paz, Eitan Salomon, Avigdor Abelson and Álvaro Israel
Mar. Drugs 2025, 23(8), 320; https://doi.org/10.3390/md23080320 - 4 Aug 2025
Viewed by 283
Abstract
Macroalgae (seaweeds) produce unique bioactive metabolites that have enabled their survival for millions of years, offering significant potential for human benefits. In the Israeli Mediterranean Sea, no comprehensive systematic surveys of seaweeds have been published since the 1990s, and their chemical composition remains [...] Read more.
Macroalgae (seaweeds) produce unique bioactive metabolites that have enabled their survival for millions of years, offering significant potential for human benefits. In the Israeli Mediterranean Sea, no comprehensive systematic surveys of seaweeds have been published since the 1990s, and their chemical composition remains largely unexplored. This study presents an extensive survey of intertidal seaweed communities along the shallow Israeli coastline, documenting their spatial, temporal, and biochemical diversity. Of the 320 specimens collected, 55 seaweed species were identified: 29 red (Rhodophyta), 14 brown (Phaeophyceae), and 12 green (Chlorophyta). A significant shift in species abundance was documented, with a single dominant annual bloom occurring during spring, unlike previously reported biannual blooms. Chemical analysis of the dominant species revealed significant seasonal variations in compound levels, with higher protein content in winter and increased antioxidant capacity during spring. Phenolic and natural sunscreen compounds (mycosporine-like amino acids, MAAs) showed no general seasonal trend. These findings highlight the optimal environmental conditions for seaweed growth and underscore their potential for aquaculture and biotechnology. We hypothesize that the ecologically unique conditions of the Israeli Mediterranean Sea may foster resilient seaweed species enriched with distinctive chemical properties, suitable for nutritional, health, pharmaceutical, and nutraceutical applications, particularly as climate-adaptive bioresources. Full article
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10 pages, 903 KiB  
Article
Gender Differences in Visual Information Perception Ability: A Signal Detection Theory Approach
by Yejin Lee and Kwangtae Jung
Appl. Sci. 2025, 15(15), 8621; https://doi.org/10.3390/app15158621 (registering DOI) - 4 Aug 2025
Viewed by 116
Abstract
The accurate perception of visual stimuli in human–machine systems is crucial for improving system safety, usability, and task performance. The widespread adoption of digital technology has significantly increased the importance of visual interfaces and information. Therefore, it is essential to design visual interfaces [...] Read more.
The accurate perception of visual stimuli in human–machine systems is crucial for improving system safety, usability, and task performance. The widespread adoption of digital technology has significantly increased the importance of visual interfaces and information. Therefore, it is essential to design visual interfaces and information with user characteristics in mind to ensure accurate perception of visual information. This study employed the Cognitive Perceptual Assessment for Driving (CPAD) to evaluate and compare gender differences in the ability to perceive visual signals within complex visual stimuli. The experimental setup included a computer with CPAD installed, along with a touch monitor, mouse, joystick, and keyboard. The participants included 11 male and 20 female students, with an average age of 22 for males and 21 for females. Prior to the experiment, participants were instructed to determine whether a signal stimulus was present: if a square, presented as the signal, was included in the visual stimulus, they moved the joystick to the left; otherwise, they moved it to the right. Each participant performed a total of 40 trials. The entire experiment was recorded on video to measure overall response times. The experiment measured the number of correct detections of signal presence, response times, the number of misses (failing to detect the signal when present), and false alarms (detecting the signal when absent). The analysis of experimental data revealed no significant differences in perceptual ability or response times for visual stimuli between genders. However, males demonstrated slightly superior perceptual ability and marginally shorter response times compared to females. Analyses of sensitivity and response bias, based on signal detection theory, also indicated a slightly higher perceptual ability in males. In conclusion, although these differences were not statistically significant, males demonstrated a slightly better perception ability for visual stimuli. The findings of this study can inform the design of information, user interfaces, and visual displays in human–machine systems, particularly in light of the recent trend of increased female participation in the industrial sector. Future research will focus on diverse types of visual information to further validate these findings. Full article
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14 pages, 11645 KiB  
Article
Changes of Ecosystem Service Value in the Water Source Area of the West Route of the South–North Water Diversion Project
by Zhimin Du, Bo Li, Bingfei Yan, Fei Xing, Shuhu Xiao, Xiaohe Xu, Yakun Yuan and Yongzhi Liu
Water 2025, 17(15), 2305; https://doi.org/10.3390/w17152305 - 3 Aug 2025
Viewed by 220
Abstract
To ensure water source security and sustainability of the national major strategic project “South-to-North Water Diversion”, this study aims to evaluate the spatio-temporal evolution characteristics of the ecosystem service value (ESV) in its water source area from 2002 to 2022. This study reveals [...] Read more.
To ensure water source security and sustainability of the national major strategic project “South-to-North Water Diversion”, this study aims to evaluate the spatio-temporal evolution characteristics of the ecosystem service value (ESV) in its water source area from 2002 to 2022. This study reveals its changing trends and main influencing factors, and thereby provides scientific support for the ecological protection and management of the water source area. Quantitative assessment of the ESV of the region was carried out using the Equivalence Factor Method (EFM), aiming to provide scientific support for ecological protection and resource management decision-making. In the past 20 years, the ESV has shown an upward trend year by year, increasing by 96%. The regions with the highest ESV were Garzê Prefecture and Aba Prefecture, which increased by 130.3% and 60.6%, respectively. The ESV of Xinlong county, Danba county, Rangtang county, and Daofu county increased 4.8 times, 1.5 times, 12.5 times, and 8.9 times, respectively. In the last two decades, arable land has decreased by 91%, while the proportions of bare land and water have decreased by 84% and 91%, respectively. Grassland had the largest proportion. Forests and grasslands, vital for climate regulation, water cycle management, and biodiversity conservation, have expanded by 74% and 43%, respectively. It can be seen from Moran’s I index values that the dataset as a whole showed a slight positive spatial autocorrelation, which increased from −0.041396 to 0.046377. This study reveals the changing trends in ESV and the main influencing factors, and thereby provides scientific support for the ecological protection and management of the water source area. Full article
(This article belongs to the Special Issue Watershed Ecohydrology and Water Quality Modeling)
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13 pages, 2384 KiB  
Article
Legacy and Luxury Effects: Dual Drivers of Tree Diversity Dynamics in Beijing’s Urbanizing Residential Areas (2006–2021)
by Xi Li, Jicun Bao, Yue Li, Jijie Wang, Wenchao Yan and Wen Zhang
Forests 2025, 16(8), 1269; https://doi.org/10.3390/f16081269 - 3 Aug 2025
Viewed by 169
Abstract
Numerous studies have demonstrated that in residential areas of Western cities, both luxury and legacy effects significantly shape tree species diversity dynamics. However, the specific mechanisms driving these diversity patterns in China, where urbanization has progressed at an unprecedented pace, remain poorly understood. [...] Read more.
Numerous studies have demonstrated that in residential areas of Western cities, both luxury and legacy effects significantly shape tree species diversity dynamics. However, the specific mechanisms driving these diversity patterns in China, where urbanization has progressed at an unprecedented pace, remain poorly understood. In this study we selected 20 residential settlements and 7 key socio-economic properties to investigate the change trend of tree diversity (2006–2021) and its socio-economic driving factors in Beijing. Our results demonstrate significant increases in total, native, and exotic tree species richness between 2006 and 2021 (p < 0.05), with average increases of 36%, 26%, and 55%, respectively. Total and exotic tree Shannon-Wiener indices, as well as exotic tree Simpson’s index, were also significantly higher in 2021 (p < 0.05). Housing prices was the dominant driver shaping total and exotic tree diversity, showing significant positive correlations with both metrics. In contrast, native tree diversity exhibited a strong positive association with neighborhood age. Our findings highlight two dominant mechanisms: legacy effect, where older neighborhoods preserve native diversity through historical planting practices, and luxury effect, where affluent communities drive exotic species proliferation through ornamental landscaping initiatives. These findings elucidate the dual dynamics of legacy conservation and luxury-driven cultivation in urban forest development, revealing how historical contingencies and contemporary socioeconomic forces jointly shape tree diversity patterns in urban ecosystems. Full article
(This article belongs to the Section Urban Forestry)
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38 pages, 6505 KiB  
Review
Trends in Oil Spill Modeling: A Review of the Literature
by Rodrigo N. Vasconcelos, André T. Cunha Lima, Carlos A. D. Lentini, José Garcia V. Miranda, Luís F. F. de Mendonça, Diego P. Costa, Soltan G. Duverger and Elaine C. B. Cambui
Water 2025, 17(15), 2300; https://doi.org/10.3390/w17152300 - 2 Aug 2025
Viewed by 285
Abstract
Oil spill simulation models are essential for predicting the oil spill behavior and movement in marine environments. In this study, we comprehensively reviewed a large and diverse body of peer-reviewed literature obtained from Scopus and Web of Science. Our initial analysis phase focused [...] Read more.
Oil spill simulation models are essential for predicting the oil spill behavior and movement in marine environments. In this study, we comprehensively reviewed a large and diverse body of peer-reviewed literature obtained from Scopus and Web of Science. Our initial analysis phase focused on examining trends in scientific publications, utilizing the complete dataset derived after systematic screening and database integration. In the second phase, we applied elements of a systematic review to identify and evaluate the most influential contributions in the scientific field of oil spill simulations. Our analysis revealed a steady and accelerating growth of research activity over the past five decades, with a particularly notable expansion in the last two. The field has also experienced a marked increase in collaborative practices, including a rise in international co-authorship and multi-authored contributions, reflecting a more global and interdisciplinary research landscape. We cataloged the key modeling frameworks that have shaped the field from established systems such as OSCAR, OIL-MAP/SIMAP, and GNOME to emerging hybrid and Lagrangian approaches. Hydrodynamic models were consistently central, often integrated with biogeochemical, wave, atmospheric, and oil-spill-specific modules. Environmental variables such as wind, ocean currents, and temperature were frequently used to drive model behavior. Geographically, research has concentrated on ecologically and economically sensitive coastal and marine regions. We conclude that future progress will rely on the real-time integration of high-resolution environmental data streams, the development of machine-learning-based surrogate models to accelerate computations, and the incorporation of advanced biodegradation and weathering mechanisms supported by experimental data. These advancements are expected to enhance the accuracy, responsiveness, and operational value of oil spill modeling tools, supporting environmental monitoring and emergency response. Full article
(This article belongs to the Special Issue Advanced Remote Sensing for Coastal System Monitoring and Management)
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30 pages, 1142 KiB  
Review
Beyond the Backbone: A Quantitative Review of Deep-Learning Architectures for Tropical Cyclone Track Forecasting
by He Huang, Difei Deng, Liang Hu, Yawen Chen and Nan Sun
Remote Sens. 2025, 17(15), 2675; https://doi.org/10.3390/rs17152675 - 2 Aug 2025
Viewed by 202
Abstract
Accurate forecasting of tropical cyclone (TC) tracks is critical for disaster preparedness and risk mitigation. While traditional numerical weather prediction (NWP) systems have long served as the backbone of operational forecasting, they face limitations in computational cost and sensitivity to initial conditions. In [...] Read more.
Accurate forecasting of tropical cyclone (TC) tracks is critical for disaster preparedness and risk mitigation. While traditional numerical weather prediction (NWP) systems have long served as the backbone of operational forecasting, they face limitations in computational cost and sensitivity to initial conditions. In recent years, deep learning (DL) has emerged as a promising alternative, offering data-driven modeling capabilities for capturing nonlinear spatiotemporal patterns. This paper presents a comprehensive review of DL-based approaches for TC track forecasting. We categorize all DL-based TC tracking models according to the architecture, including recurrent neural networks (RNNs), convolutional neural networks (CNNs), Transformers, graph neural networks (GNNs), generative models, and Fourier-based operators. To enable rigorous performance comparison, we introduce a Unified Geodesic Distance Error (UGDE) metric that standardizes evaluation across diverse studies and lead times. Based on this metric, we conduct a critical comparison of state-of-the-art models and identify key insights into their relative strengths, limitations, and suitable application scenarios. Building on this framework, we conduct a critical cross-model analysis that reveals key trends, performance disparities, and architectural tradeoffs. Our analysis also highlights several persistent challenges, such as long-term forecast degradation, limited physical integration, and generalization to extreme events, pointing toward future directions for developing more robust and operationally viable DL models for TC track forecasting. To support reproducibility and facilitate standardized evaluation, we release an open-source UGDE conversion tool on GitHub. Full article
(This article belongs to the Section AI Remote Sensing)
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14 pages, 1462 KiB  
Article
Theoretical Investigation of the Material Usage During On-Bead Enrichment of Post-Translationally Modified Peptides in Suspension Systems
by Kai Liu, Yuanyu Huang, Thomas Huang, Pengyuan Yang, Jilie Kong, Huali Shen and Quanqing Zhang
Molecules 2025, 30(15), 3245; https://doi.org/10.3390/molecules30153245 - 2 Aug 2025
Viewed by 194
Abstract
Over the past decade, the number and diversity of identified protein post-translational modifications (PTMs) have grown significantly. However, most PTMs occur at relatively low abundance, making selective enrichment of modified peptides essential. To address this, we developed a thermodynamic model describing the free [...] Read more.
Over the past decade, the number and diversity of identified protein post-translational modifications (PTMs) have grown significantly. However, most PTMs occur at relatively low abundance, making selective enrichment of modified peptides essential. To address this, we developed a thermodynamic model describing the free beads enrichment in suspension enrichment process and derived a theoretical relationship between material dosage and analyte recovery. The model predicts a non-linear trend, with enrichment efficiency increasing up to an optimal dosage and declining thereafter—a pattern confirmed by experimental data. We validated the model using centrifugation-based enrichment for glycosylated peptides and magnetic-based enrichment for phosphorylated peptides. In both cases, the results aligned with theoretical predictions. Additionally, the optimal dosage varied among peptides with the same modification type, highlighting the importance of tailoring enrichment strategies. This study provides a solid theoretical and experimental basis for optimizing PTMs enrichment and advancing more sensitive, accurate, and efficient mass spectrometry-based proteomic workflows. Full article
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17 pages, 1195 KiB  
Article
Phytochemical Profiling, Antioxidant Capacity, and α-Amylase/α-Glucosidase Inhibitory Effects of 29 Faba Bean (Vicia faba L.) Varieties from China
by Ying Li, Zhihua Wang, Chengkai Mei, Wenqi Sun, Xingxing Yuan, Jing Wang and Wuyang Huang
Biology 2025, 14(8), 982; https://doi.org/10.3390/biology14080982 (registering DOI) - 2 Aug 2025
Viewed by 226
Abstract
Faba bean (Vicia faba L.), a nutrient-rich legume beneficial to human health, is valued for its high L-3,4-dihydroxyphenylalanine (L-DOPA) and phenolic content. This study investigated phytochemical diversity and bioactivity across 29 Chinese faba bean varieties. Phenolics were profiled using ultrahigh-performance liquid chromatography [...] Read more.
Faba bean (Vicia faba L.), a nutrient-rich legume beneficial to human health, is valued for its high L-3,4-dihydroxyphenylalanine (L-DOPA) and phenolic content. This study investigated phytochemical diversity and bioactivity across 29 Chinese faba bean varieties. Phenolics were profiled using ultrahigh-performance liquid chromatography with quadrupole time-of-flight mass spectrometry (UPLC-QTOF-MS) and quantified via high-performance liquid chromatography (HPLC). Antioxidant capacity was evaluated, including DPPH (2,2-diphenyl-1-picrylhydrazyl), ABTS (2,2-azinobis (3-ethylbenzothiazoline-6-sulfonic acid)) radical scavenging activity, and ferric reducing antioxidant power (FRAP), along with α-amylase/α-glucosidase inhibitory effects. Twenty-five phenolics were identified, including L-DOPA (11.96–17.93 mg/g, >70% of total content), seven phenolic acids, and seventeen flavonoids. L-DOPA showed potent enzyme inhibition (IC50 values of 22.45 μM for α-amylase and 16.66 μM for α-glucosidase) but demonstrated limited antioxidant effects. Lincan 13 (Gansu) exhibited the strongest antioxidant activity (DPPH, 16.32 μmol trolox/g; ABTS, 5.85 μmol trolox/g; FRAP, 21.38 mmol Fe2+/g), which correlated with it having the highest flavonoid content (40.51 mg rutin/g), while Yican 4 (Yunnan) showed the strongest α-amylase inhibition (43.33%). Correlation analysis confirmed flavonoids as the primary antioxidants, and principal component analysis (PCA) revealed geographical trends (e.g., Jiangsu varieties were particularly phenolic-rich). These findings highlight faba beans’ potential as functional foods and guide genotype selection in targeted breeding programs aimed at enhancing health benefits. Full article
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55 pages, 4017 KiB  
Review
Sonchus Species of the Mediterranean Region: From Wild Food to Horticultural Innovation—Exploring Taxonomy, Cultivation, and Health Benefits
by Adrián Ruiz-Rocamora, Concepción Obón, Segundo Ríos, Francisco Alcaraz and Diego Rivera
Horticulturae 2025, 11(8), 893; https://doi.org/10.3390/horticulturae11080893 (registering DOI) - 1 Aug 2025
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Abstract
The genus Sonchus (Asteraceae) comprises 98 species, including 17 predominantly herbaceous taxa native to the Mediterranean region. These plants have long been utilized as traditional wild food sources due to their high nutritional value, as they are rich in vitamins A, C, and [...] Read more.
The genus Sonchus (Asteraceae) comprises 98 species, including 17 predominantly herbaceous taxa native to the Mediterranean region. These plants have long been utilized as traditional wild food sources due to their high nutritional value, as they are rich in vitamins A, C, and K, essential minerals, and bioactive compounds with antioxidant and anti-inflammatory properties. This review aims to provide a comprehensive synthesis of the taxonomy, geographic distribution, phytochemical composition, traditional uses, historical significance, and pharmacological properties of Sonchus species. A systematic literature search was conducted using PubMed, Scopus, Web of Science, and Google Scholar, focusing on studies from 1980 to 2024. Inclusion and exclusion criteria were applied, and methodological quality was assessed using standardized tools. A bibliometric analysis of 440 publications (from 1856 to 2025) reveals evolving research trends, with S. oleraceus, S. arvensis, and S. asper being the most extensively studied species. The review provides detailed taxonomic insights into 17 species and 14 subspecies, emphasizing their ecological adaptations and biogeographical patterns. Additionally, it highlights the cultural and medicinal relevance of Sonchus since antiquity while underscoring the threats posed by environmental degradation and changing dietary habits. Sonchus oleraceus and S. tenerrimus dominate the culinary applications of the genus, likely due to favorable taste, wide accessibility, and longstanding cultural importance. The comprehensive nutritional profile of Sonchus species positions these plants as valuable contributors to dietary diversity and food security. Finally, the study identifies current knowledge gaps and proposes future research directions to support the conservation and sustainable utilization of Sonchus species. Full article
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