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27 pages, 7775 KiB  
Article
Fourier–Bessel Series Expansion and Empirical Wavelet Transform-Based Technique for Discriminating Between PV Array and Line Faults to Enhance Resiliency of Protection in DC Microgrid
by Laxman Solankee, Avinash Rai and Mukesh Kirar
Energies 2025, 18(15), 4171; https://doi.org/10.3390/en18154171 - 6 Aug 2025
Abstract
The growing demand for power and the rising awareness of the need to reduce carbon footprints have led to wider acceptance of photovoltaic (PV)-integrated microgrids. PV-based microgrids have numerous significant advantages over other distributed energy resources; however, creating a dependable protection scheme for [...] Read more.
The growing demand for power and the rising awareness of the need to reduce carbon footprints have led to wider acceptance of photovoltaic (PV)-integrated microgrids. PV-based microgrids have numerous significant advantages over other distributed energy resources; however, creating a dependable protection scheme for the DC microgrid is difficult due to the closely resembling current and voltage profiles of PV array faults and line faults in the DC network. The conventional methods fail to clearly discriminate between them. In this regard, a fault-resilient scheme exploiting the inherent characteristics of Fourier–Bessel Series Expansion and Empirical Wavelet Transform (FBSE-EWT) has been utilized in the present work. In order to enhance the efficacy of the bagging tree-based ensemble classifier, Artificial Gorilla Troop Optimization (AGTO) has been used to tune the hyperparameters. The hybrid protection approach is proposed for accurate fault detection, discrimination between scenarios (source-side fault and line-side fault), and classification of various fault types (pole–pole and pole–ground). The discriminatory attributes derived from voltage and current signals recorded at the DC bus using the hybrid FBSE-EWT have been utilized as an input feature set for the AGTO tuned bagging tree-based ensemble classifier to perform the intended tasks of fault detection and discrimination between source faults (PV array faults) and line faults (DC network). The proposed approach has been found to outperform the decision tree and SVM techniques, demonstrating reliability in terms of discriminating between the PV array faults and the DC line faults and resilience against fluctuations in PV irradiance levels. Full article
(This article belongs to the Section A1: Smart Grids and Microgrids)
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13 pages, 2106 KiB  
Article
Diagnosis of the Multiepitope Protein rMELEISH3 for Canine Visceral Leishmaniasis
by Rita Alaide Leandro Rodrigues, Mariana Teixeira de Faria, Isadora Braga Gandra, Juliana Martins Machado, Ana Alice Maia Gonçalves, Daniel Ferreira Lair, Diana Souza de Oliveira, Lucilene Aparecida Resende, Maykelin Fuentes Zaldívar, Ronaldo Alves Pinto Nagem, Rodolfo Cordeiro Giunchetti, Alexsandro Sobreira Galdino and Eduardo Sergio da Silva
Appl. Sci. 2025, 15(15), 8683; https://doi.org/10.3390/app15158683 (registering DOI) - 6 Aug 2025
Abstract
Canine visceral leishmaniasis (CVL) is a major zoonosis that poses a growing challenge to public health services, as successful disease management requires sensitive, specific, and rapid diagnostic methods capable of identifying infected animals even at a subclinical level. The objective of this study [...] Read more.
Canine visceral leishmaniasis (CVL) is a major zoonosis that poses a growing challenge to public health services, as successful disease management requires sensitive, specific, and rapid diagnostic methods capable of identifying infected animals even at a subclinical level. The objective of this study was to evaluate the performance of the recombinant chimeric protein rMELEISH3 as an antigen in ELISA assays for the robust diagnosis of CVL. The protein was expressed in a bacterial system, purified by affinity chromatography, and evaluated through a series of serological assays using serum samples from dogs infected with Leishmania infantum. ROC curve analysis revealed a diagnostic sensitivity of 96.4%, a specificity of 100%, and an area under the curve of 0.996, indicating excellent discriminatory power. Furthermore, rMELEISH3 was recognized by antibodies present in the serum of dogs with low parasite loads, reinforcing the diagnostic potential of the assay in asymptomatic cases. It is concluded that the use of the recombinant antigen rMELEISH3 could significantly contribute to the improvement of CVL surveillance and control programs in endemic areas of Brazil and other countries, by offering a safe, reproducible and effective alternative to the methods currently recommended for the serological diagnosis of the disease. Full article
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29 pages, 3012 KiB  
Article
Investigating Multi-Omic Signatures of Ethnicity and Dysglycaemia in Asian Chinese and European Caucasian Adults: Cross-Sectional Analysis of the TOFI_Asia Study at 4-Year Follow-Up
by Saif Faraj, Aidan Joblin-Mills, Ivana R. Sequeira-Bisson, Kok Hong Leiu, Tommy Tung, Jessica A. Wallbank, Karl Fraser, Jennifer L. Miles-Chan, Sally D. Poppitt and Michael W. Taylor
Metabolites 2025, 15(8), 522; https://doi.org/10.3390/metabo15080522 - 1 Aug 2025
Viewed by 292
Abstract
Background: Type 2 diabetes (T2D) is a global health epidemic with rising prevalence within Asian populations, particularly amongst individuals with high visceral adiposity and ectopic organ fat, the so-called Thin-Outside, Fat-Inside phenotype. Metabolomic and microbiome shifts may herald T2D onset, presenting potential biomarkers [...] Read more.
Background: Type 2 diabetes (T2D) is a global health epidemic with rising prevalence within Asian populations, particularly amongst individuals with high visceral adiposity and ectopic organ fat, the so-called Thin-Outside, Fat-Inside phenotype. Metabolomic and microbiome shifts may herald T2D onset, presenting potential biomarkers and mechanistic insight into metabolic dysregulation. However, multi-omics datasets across ethnicities remain limited. Methods: We performed cross-sectional multi-omics analyses on 171 adults (99 Asian Chinese, 72 European Caucasian) from the New Zealand-based TOFI_Asia cohort at 4-years follow-up. Paired plasma and faecal samples were analysed using untargeted metabolomic profiling (polar/lipid fractions) and shotgun metagenomic sequencing, respectively. Sparse multi-block partial least squares regression and discriminant analysis (DIABLO) unveiled signatures associated with ethnicity, glycaemic status, and sex. Results: Ethnicity-based DIABLO modelling achieved a balanced error rate of 0.22, correctly classifying 76.54% of test samples. Polar metabolites had the highest discriminatory power (AUC = 0.96), with trigonelline enriched in European Caucasians and carnitine in Asian Chinese. Lipid profiles highlighted ethnicity-specific signatures: Asian Chinese showed enrichment of polyunsaturated triglycerides (TG.16:0_18:2_22:6, TG.18:1_18:2_22:6) and ether-linked phospholipids, while European Caucasians exhibited higher levels of saturated species (TG.16:0_16:0_14:1, TG.15:0_15:0_17:1). The bacteria Bifidobacterium pseudocatenulatum, Erysipelatoclostridium ramosum, and Enterocloster bolteae characterised Asian Chinese participants, while Oscillibacter sp. and Clostridium innocuum characterised European Caucasians. Cross-omic correlations highlighted negative correlations of Phocaeicola vulgatus with amino acids (r = −0.84 to −0.76), while E. ramosum and C. innocuum positively correlated with long-chain triglycerides (r = 0.55–0.62). Conclusions: Ethnicity drove robust multi-omic differentiation, revealing distinctive metabolic and microbial profiles potentially underlying the differential T2D risk between Asian Chinese and European Caucasians. Full article
(This article belongs to the Section Endocrinology and Clinical Metabolic Research)
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15 pages, 1321 KiB  
Article
The Role of Inflammatory Biomarkers in Predicting Postoperative Fever Following Flexible Ureteroscopy
by Rasha Ahmed, Omnia Hamdy, Atallah Alatawi, A. Alhowidi, Nael Al-Dahshan, Ahmad Nouraldin Alkadah, Siddique Adnan, Abdullah Mahmoud Alali, Yazeed Hamdan O. Alwabisi, Saleh Alruwaili, Muteb Bandar Binmohaiya, Amany Ahmed Soliman and Mohamed Elbakary
Medicina 2025, 61(8), 1366; https://doi.org/10.3390/medicina61081366 - 28 Jul 2025
Viewed by 259
Abstract
Background and Objectives: Flexible ureteroscopic surgery is a common minimally invasive procedure utilized for the management of various urological conditions. While effective, postoperative complications such as fever can occur, necessitating the identification of reliable biomarkers for early detection and management. In this [...] Read more.
Background and Objectives: Flexible ureteroscopic surgery is a common minimally invasive procedure utilized for the management of various urological conditions. While effective, postoperative complications such as fever can occur, necessitating the identification of reliable biomarkers for early detection and management. In this study, we specifically evaluated the predictive performance of three preoperative hematologic indices: the neutrophil-to-lymphocyte ratio (NLR), platelet-to-lymphocyte ratio (PLR), and systemic immune–inflammation index (SII). Materials and Methods: By systematically comparing these biomarkers through receiver operating characteristic (ROC) curve analysis and logistic regression modeling, we aimed to identify the most accurate predictor of postoperative fever development. Our cohort included patients who developed postoperative fever, many of whom exhibited normal WBC counts, allowing us to evaluate the discriminatory power of alternative inflammatory biomarkers. Results: Among the 150 patients, 32 developed postoperative fever. Conventional WBC counts did not predict fever, with 91% of feverish individuals having normal WBC values. In the ROC curve analysis, NLR outperformed SII (AUC 0.847, cutoff 796) and PLR (AUC 0.743, cutoff 106), with an AUC of 0.996 at 2.96. A combined logistic model achieved 100% sensitivity and 91% specificity (AUC = 0.996). Conclusions: This study addresses a critical gap in perioperative monitoring by validating readily available complete blood count-derived ratios as clinically meaningful predictors of postoperative inflammatory responses. Full article
(This article belongs to the Section Urology & Nephrology)
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24 pages, 1990 KiB  
Article
Metabolomic Analysis of Breast Cancer in Colombian Patients: Exploring Molecular Signatures in Different Subtypes and Stages
by Lizeth León-Carreño, Daniel Pardo-Rodriguez, Andrea Del Pilar Hernandez-Rodriguez, Juliana Ramírez-Prieto, Gabriela López-Molina, Ana G. Claros, Daniela Cortes-Guerra, Julian Alberto-Camargo, Wilson Rubiano-Forero, Adrian Sandoval-Hernandez, Mónica P. Cala and Alejandro Ondo-Mendez
Int. J. Mol. Sci. 2025, 26(15), 7230; https://doi.org/10.3390/ijms26157230 - 26 Jul 2025
Viewed by 366
Abstract
Breast cancer (BC) is a neoplasm characterized by high heterogeneity and is influenced by intrinsic molecular subtypes and clinical stage, aspects that remain underexplored in the Colombian population. This study aimed to characterize metabolic alterations associated with subtypes and disease progression in a [...] Read more.
Breast cancer (BC) is a neoplasm characterized by high heterogeneity and is influenced by intrinsic molecular subtypes and clinical stage, aspects that remain underexplored in the Colombian population. This study aimed to characterize metabolic alterations associated with subtypes and disease progression in a group of newly diagnosed, treatment-naive Colombian women using an untargeted metabolomics approach. To improve metabolite coverage, samples were analyzed using LC-QTOF-MS and GC-QTOF-MS, along with amino acid profiling. The Luminal B subtype exhibited elevated levels of long-chain acylcarnitines and higher free fatty acid concentrations than the other subtypes. It also presented elevated levels of carbohydrates and essential glycolytic intermediates, suggesting that this subtype may adopt a hybrid metabolic phenotype characterized by increased glycolytic flux as well as enhanced fatty acid catabolism. Tumor, Node, and Metastasis (TNM) staging analysis revealed progressive metabolic reprogramming of BC. In advanced stages, a sustained increase in phosphatidylcholines and a decrease in lysophosphatidylcholines were observed, reflecting lipid alterations associated with key roles in tumor progression. In early stages (I-II), plasma metabolites with high discriminatory power were identified, such as glutamic acid, ribose, and glycerol, which are associated with dysfunctions in energy and carbohydrate metabolism. These results highlight metabolomics as a promising tool for the early diagnosis, clinical follow-up, and molecular characterization of BC. Full article
(This article belongs to the Special Issue Molecular Crosstalk in Breast Cancer Progression and Therapies)
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19 pages, 5345 KiB  
Article
Identification of Novel Biomarkers in Huntington’s Disease Based on Differential Gene Expression Meta-Analysis and Machine Learning Approach
by Nayan Dash, Md Abul Bashar, Jeonghan Lee and Raju Dash
Appl. Sci. 2025, 15(15), 8286; https://doi.org/10.3390/app15158286 - 25 Jul 2025
Viewed by 199
Abstract
Huntington’s disease (HD) is a severe and progressive neurodegenerative disease for which therapeutic options have so far been confined to symptomatic treatment. Currently, the diagnosis relies on the signs and symptoms shown by patients; however, by that stage, the psychomotor issues have progressed [...] Read more.
Huntington’s disease (HD) is a severe and progressive neurodegenerative disease for which therapeutic options have so far been confined to symptomatic treatment. Currently, the diagnosis relies on the signs and symptoms shown by patients; however, by that stage, the psychomotor issues have progressed to a point where reversal of the condition is unattainable. Although numerous clinical trials have been actively investigating therapeutic agents aimed at preventing the onset of disease or slowing down the disease progression, there has been a constant need for reliable biomarkers to assess neurodegeneration, monitor disease progression, and assess the efficacy of treatments accurately. Therefore, to discover the key biomarkers associated with the progression of HD, we employed bioinformatics and machine learning (ML) to create a robust pipeline that integrated differentially expressed gene (DEG) analysis with ML to select potential biomarkers. We performed a meta-analysis to identify DEGs using three Gene Expression Omnibus (GEO) microarray datasets from different platforms related to HD-affected brain tissue, applying both relaxed and strict criteria to identify differentially expressed genes. Subsequently, focusing only on genes identified through the inclusive threshold, we employed 19 diverse ML techniques to explore the common genes that contributed to the top three selected ML algorithms and the shared genes that had an impact on the ML algorithms and were observed in the meta-analysis using the stringent condition were selected. Additionally, a receiver operating characteristic (ROC) analysis was conducted on external datasets to validate the discriminatory power of the identified genes. Based on the results of an inverse variance weighted meta-analysis of the AUCs across both human and mouse cohorts, GABRD and PHACTR1 were identified as the most robust candidates and were selected as key biomarkers for HD. Our comprehensive methodology, which integrates DEG meta-analysis with ML techniques, enabled a systematic prioritization of these biomarkers, providing valuable insights into their biological significance and potential for further validation in clinical research. Full article
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22 pages, 2461 KiB  
Article
Environmental Drivers of Phytoplankton Structure in a Semi-Arid Reservoir
by Fangze Zi, Tianjian Song, Wenxia Cai, Jiaxuan Liu, Yanwu Ma, Xuyuan Lin, Xinhong Zhao, Bolin Hu, Daoquan Ren, Yong Song and Shengao Chen
Biology 2025, 14(8), 914; https://doi.org/10.3390/biology14080914 - 22 Jul 2025
Viewed by 310
Abstract
Artificial reservoirs in arid regions provide unique ecological environments for studying the spatial and functional dynamics of plankton communities under the combined stressors of climate change and anthropogenic activities. This study conducted a systematic investigation of the phytoplankton community structure and its environmental [...] Read more.
Artificial reservoirs in arid regions provide unique ecological environments for studying the spatial and functional dynamics of plankton communities under the combined stressors of climate change and anthropogenic activities. This study conducted a systematic investigation of the phytoplankton community structure and its environmental drivers in 17 artificial reservoirs in the Ili region of Xinjiang in August and October 2024. The Ili region is located in the temperate continental arid zone of northwestern China. A total of 209 phytoplankton species were identified, with Bacillariophyta, Chlorophyta, and Cyanobacteria comprising over 92% of the community, indicating an oligarchic dominance pattern. The decoupling between numerical dominance (diatoms) and biomass dominance (cyanobacteria) revealed functional differentiation and ecological complementarity among major taxa. Through multivariate analyses, including Mantel tests, principal component analysis (PCA), and redundancy analysis (RDA), we found that phytoplankton community structures at different ecological levels responded distinctly to environmental gradients. Oxidation-reduction potential (ORP), dissolved oxygen (DO), and mineralization parameters (EC, TDS) were key drivers of morphological operational taxonomic unit (MOTU). In contrast, dominant species (SP) were more responsive to salinity and pH. A seasonal analysis demonstrated significant shifts in correlation structures between summer and autumn, reflecting the regulatory influence of the climate on redox conditions and nutrient solubility. Machine learning using the random forest model effectively identified core taxa (e.g., MOTU1 and SP1) with strong discriminatory power, confirming their potential as bioindicators for water quality assessments and the early warning of ecological shifts. These core taxa exhibited wide spatial distribution and stable dominance, while localized dominant species showed high sensitivity to site-specific environmental conditions. Our findings underscore the need to integrate taxonomic resolution with functional and spatial analyses to reveal ecological response mechanisms in arid-zone reservoirs. This study provides a scientific foundation for environmental monitoring, water resource management, and resilience assessments in climate-sensitive freshwater ecosystems. Full article
(This article belongs to the Special Issue Wetland Ecosystems (2nd Edition))
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24 pages, 1334 KiB  
Article
Evaluation of the Global White Lupin Collection Reveals Significant Associations Between Homologous FLOWERING LOCUS T Indels and Flowering Time, Providing Validated Markers for Tracking Spring Ecotypes Within a Large Gene Pool
by Wojciech Bielski, Anna Surma, Michał Książkiewicz and Sandra Rychel-Bielska
Int. J. Mol. Sci. 2025, 26(14), 6858; https://doi.org/10.3390/ijms26146858 - 17 Jul 2025
Viewed by 226
Abstract
FLOWERING LOCUS T (FT) is a key integrator of flowering pathways. White lupin, a grain legume, encodes four FT homologs: LalbFTa1, LalbFTa2, LalbFTc1, and LalbFTc2. Widespread distribution of white lupin implies diverse phenological adaptations to contrasting ecosystems. [...] Read more.
FLOWERING LOCUS T (FT) is a key integrator of flowering pathways. White lupin, a grain legume, encodes four FT homologs: LalbFTa1, LalbFTa2, LalbFTc1, and LalbFTc2. Widespread distribution of white lupin implies diverse phenological adaptations to contrasting ecosystems. Recent studies highlighted associations between FT indels and flowering regulation. Therefore, we surveyed the global white lupin collection for the presence of such indels and potential links to phenology. A panel of 626 white lupin genotypes, representing several European and African agro-climates, was phenotyped under a long-day photoperiod in a two-year study, showing up to 80 days of flowering time difference between early landraces from Eastern Mediterranean and late accessions from France, Madeira, the Canaries, Greece, Italy, and the Azores. As many as seventeen indel variants were identified for LalbFTc1, twelve for LalbFTa2, nine for LalbFTa1, and four for LalbFTc2, yielding roughly three hundred allelic combinations. Significant correlations with phenology were confirmed for one LalbFTa1 indel and twelve LalbFTc1 indels. A large, highly correlated LalbFTc1 indel was revealed to be conserved among all domesticated Old World lupins, carrying all FTc1-promoter candidate binding sites of the same major floral repressor, AGAMOUS-LIKE 15. A small LalbFTa1 indel, providing additional contribution to earliness, showed homology between white and yellow lupins. LalbFTc1 indel-based PCR markers revealed high discriminatory power towards early (PR_42a and PR_71b) or late (PR_58c, PR_36b, PR_80, and PR_60b) flowering. Full article
(This article belongs to the Special Issue Developing Methods and Molecular Basis in Plant Biotechnology)
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16 pages, 1070 KiB  
Article
Validation of the HFA-ICOS Score for Carfilzomib-Induced Cardiotoxicity in Multiple Myeloma: A Real-Life Perspective Study
by Anna Astarita, Giulia Mingrone, Lorenzo Airale, Anna Colomba, Cinzia Catarinella, Marco Cesareo, Fabrizio Vallelonga, Arianna Paladino, Giulia Bruno, Dario Leone, Francesca Gay, Sara Bringhen, Franco Veglio and Alberto Milan
Cancers 2025, 17(14), 2353; https://doi.org/10.3390/cancers17142353 - 15 Jul 2025
Viewed by 289
Abstract
Background: Despite the inference about the cardiotoxicity induced by Carfilzomib, no validated risk prediction models for adverse cardiovascular events in a real-life population are available. Objectives: The aim of this study was to evaluate the performance of the risk stratification score for Carfilzomib-induced [...] Read more.
Background: Despite the inference about the cardiotoxicity induced by Carfilzomib, no validated risk prediction models for adverse cardiovascular events in a real-life population are available. Objectives: The aim of this study was to evaluate the performance of the risk stratification score for Carfilzomib-induced cardiotoxicity of the Heart Failure Association of the European Society of Cardiology and the International Cardio-Oncology Society (HFA-ICOS) in patients with multiple myeloma (MM). Methods: This is a prospective, real-world study including MM patients consecutively enrolled prior to starting Carfilzomib, divided into levels of risk according to the HFA-ICOS proforma. Results: Of 169 patients, 11.8% were classified as ‘low risk’, 38.5% as ‘medium risk’, 45.6% as ‘high risk’ and 4.1% as ‘very high risk’ at baseline. A total of 89 (52.7%) patients experienced one of the following events: 36 (21.3%) had at least one cardiovascular event and 77 (45.6%) had almost one hypertension-related event. No significant differences were observed for the incidence of any cardiovascular events between the different levels of risk (p > 0.05), even considering the HFA-ICOS score as a continuous variable. The integration of the score with the baseline systolic blood pressure and pulse wave velocity enhanced the accuracy of the score (AUC 0.557 vs. 0.736). Conclusions: The HFA-ICOS score did not discriminate between patients at low, medium and high risk, showing a limited discriminatory power in predicting the risk of events in our population. The integration of other parameters in the HFA-ICOS score, such as systolic blood pressure and pulse wave velocity, improved the performance of the score. Full article
(This article belongs to the Special Issue Cardio-Oncology: An Emerging Paradigm in Modern Medicine: 2nd Edition)
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26 pages, 3020 KiB  
Article
Data-Driven Loan Default Prediction: A Machine Learning Approach for Enhancing Business Process Management
by Xinyu Zhang, Tianhui Zhang, Lingmin Hou, Xianchen Liu, Zhen Guo, Yuanhao Tian and Yang Liu
Systems 2025, 13(7), 581; https://doi.org/10.3390/systems13070581 - 15 Jul 2025
Viewed by 887
Abstract
Loan default prediction is a critical task for financial institutions, directly influencing risk management, loan approval decisions, and profitability. This study evaluates the effectiveness of machine learning models, specifically XGBoost, Gradient Boosting, Random Forest, and LightGBM, in predicting loan defaults. The research investigates [...] Read more.
Loan default prediction is a critical task for financial institutions, directly influencing risk management, loan approval decisions, and profitability. This study evaluates the effectiveness of machine learning models, specifically XGBoost, Gradient Boosting, Random Forest, and LightGBM, in predicting loan defaults. The research investigates the following question: How effective are machine learning models in predicting loan defaults compared to traditional approaches? A structured machine learning pipeline is developed, including data preprocessing, feature engineering, class imbalance handling (SMOTE and class weighting), model training, hyperparameter tuning, and evaluation. Models are assessed using accuracy, F1-score, ROC AUC, precision–recall curves, and confusion matrices. The results show that Gradient Boosting achieves the highest overall classification performance (accuracy = 0.8887, F1-score = 0.8084, recall = 0.8021), making it the most effective model for identifying defaulters. XGBoost exhibits superior discriminatory power with the highest ROC AUC (0.9714). A cost-sensitive threshold-tuning procedure is embedded to align predictions with regulatory loss weights to support audit requirements. Full article
(This article belongs to the Special Issue Data-Driven Methods in Business Process Management)
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23 pages, 3006 KiB  
Article
Machine Learning Framework for Ovarian Cancer Diagnostics Using Plasma Lipidomics and Metabolomics
by Alisa Tokareva, Mariia Iurova, Natalia Starodubtseva, Vitaliy Chagovets, Anastasia Novoselova, Evgenii Kukaev, Vladimir Frankevich and Gennady Sukhikh
Int. J. Mol. Sci. 2025, 26(14), 6630; https://doi.org/10.3390/ijms26146630 - 10 Jul 2025
Viewed by 350
Abstract
Ovarian cancer (OC), the third most common gynecologic malignancy, exhibits distinct metabolic alterations that could enable early detection via liquid biopsy. We developed an advanced machine learning pipeline integrating lipidomics (HPLC-MS, positive/negative ion modes) and NMR-based metabolomics to analyze plasma samples from 229 [...] Read more.
Ovarian cancer (OC), the third most common gynecologic malignancy, exhibits distinct metabolic alterations that could enable early detection via liquid biopsy. We developed an advanced machine learning pipeline integrating lipidomics (HPLC-MS, positive/negative ion modes) and NMR-based metabolomics to analyze plasma samples from 229 subjects, including 103 serous OC patients, 107 benign cases, and 19 healthy controls. By systematically evaluating feature selection methods and machine learning architectures, we identified optimal biomarker combinations for OC detection. Convolutional Neural Network (CNN) model based on Mann–Whitney-selected features demonstrated strong discriminatory power (81% accuracy) in distinguishing malignant from benign cases, while Extreme Gradient Boosting (XGBoost) combined with Support Vector Machine-Recursive Feature Elimination (SVM-RFE) achieved exceptional performance (96% accuracy) in differentiating benign from control samples. For multiclass classification, XGBoost with Kruskal–Wallis-selected features achieved 77% accuracy, while one-versus-one CNN models utilizing Mann–Whitney-selected features attained 78% accuracy, demonstrating optimal performance among tested approaches. The complementary strengths of deep learning and ensemble methods underscore their potential for tailored diagnostic applications. While clinical implementation requires further standardization, these findings provide both a methodological framework for metabolic biomarker discovery and biological insights into OC pathophysiology, paving the way for integrated multi-omics approaches in gynecologic oncology. Full article
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12 pages, 2431 KiB  
Article
Unsupervised Clustering Successfully Predicts Prognosis in NSCLC Brain Metastasis Cohorts
by Emre Uysal, Gorkem Durak, Ayse Kotek Sedef, Ulas Bagci, Tanju Berber, Necla Gurdal and Berna Akkus Yildirim
Diagnostics 2025, 15(14), 1747; https://doi.org/10.3390/diagnostics15141747 - 10 Jul 2025
Viewed by 407
Abstract
Background/Objectives: Current developments in computer-aided systems rely heavily on complex and computationally intensive algorithms. However, even a simple approach can offer a promising solution to reduce the burden on clinicians. Addressing this, we aim to employ unsupervised cluster analysis to identify prognostic [...] Read more.
Background/Objectives: Current developments in computer-aided systems rely heavily on complex and computationally intensive algorithms. However, even a simple approach can offer a promising solution to reduce the burden on clinicians. Addressing this, we aim to employ unsupervised cluster analysis to identify prognostic subgroups of non-small-cell lung cancer (NSCLC) patients with brain metastasis (BM). Simple-yet-effective algorithms designed to identify similar group characteristics will assist clinicians in categorizing patients effectively. Methods: We retrospectively collected data from 95 NSCLC patients with BM treated at two oncology centers. To identify clinically distinct subgroups, two types of unsupervised clustering methods—two-step clustering (TSC) and hierarchical cluster analysis (HCA)—were applied to the baseline clinical data. Patients were categorized into prognostic classes according to the Diagnosis-Specific Graded Prognostic Assessment (DS-GPA). Survival curves for the clusters and DS-GPA classes were generated using Kaplan–Meier analysis, and the differences were assessed with the log-rank test. The discriminative ability of three categorical variables on survival was compared using the concordance index (C-index). Results: The mean age of the patients was 61.8 ± 0.9 years, and the majority (77.9%) were men. Extracranial metastasis was present in 71.6% of the patients, with most (63.2%) having a single BM. The DS-GPA classification significantly divided the patients into prognostic classes (p < 0.001). Furthermore, statistical significance was observed between clusters created by TSC (p < 0.001) and HCA (p < 0.001). HCA showed the highest discriminatory power (C-index = 0.721), followed by the DS-GPA (C-index = 0.709) and TSC (C-index = 0.650). Conclusions: Our findings demonstrated that the TSC and HCA models were comparable in prognostic performance to the DS-GPA index in NSCLC patients with BM. These results suggest that unsupervised clustering may offer a data-driven perspective on patient stratification, though further validation is needed to clarify its role in prognostic modeling. Full article
(This article belongs to the Special Issue Artificial Intelligence Approaches for Medical Diagnostics in the USA)
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12 pages, 836 KiB  
Article
Antimicrobial Resistance Patterns of Staphylococcus aureus Cultured from the Healthy Horses’ Nostrils Sampled in Distant Regions of Brazil
by Mauro M. S. Saraiva, Heitor Leocádio de Souza Rodrigues, Valdinete Pereira Benevides, Candice Maria Cardoso Gomes de Leon, Silvana C. L. Santos, Danilo T. Stipp, Patricia E. N. Givisiez, Rafael F. C. Vieira and Celso J. B. Oliveira
Antibiotics 2025, 14(7), 693; https://doi.org/10.3390/antibiotics14070693 - 9 Jul 2025
Viewed by 409
Abstract
Staphylococcus aureus (S. aureus) is a major cause of opportunistic infections in humans and animals, leading to severe systemic diseases. The rise of MDR strains associated with animal carriage poses significant health challenges, underscoring the need to investigate animal-derived S. aureus [...] Read more.
Staphylococcus aureus (S. aureus) is a major cause of opportunistic infections in humans and animals, leading to severe systemic diseases. The rise of MDR strains associated with animal carriage poses significant health challenges, underscoring the need to investigate animal-derived S. aureus. Objectives: This study examined the genotypic relatedness and phenotypic profiles of antimicrobial resistance in S. aureus, previously sampled from nostril swabs of healthy horses from two geographically distant Brazilian states (Northeast and South), separated by over 3700 km. The study also sought to confirm the presence of methicillin-resistant (MRSA) and borderline oxacillin-resistant (BORSA) strains and to characterize the isolates through molecular typing using PCR. Methods: Among 123 screened staphylococci, 21 isolates were confirmed as S. aureus via biochemical tests and PCR targeting species-specific genes (femA, nuc, coa). Results: REP-PCR analysis generated genotypic profiles, revealing four antimicrobial resistance patterns, with MDR observed in ten isolates. Six isolates exhibited cefoxitin resistance, suggesting methicillin resistance, despite the absence of the mecA gene. REP-PCR demonstrated high discriminatory power, grouping the isolates into five major clusters. Conclusions: The genotyping indicated no clustering by geographical origin, highlighting significant genetic diversity among S. aureus strains colonizing horses’ nostrils in Brazil. These findings highlight the widespread and varied nature of S. aureus among horses, contributing to a deeper understanding of its epidemiology and resistance profiles in animals across diverse regions. Ultimately, this genetic diversity can pose a public health risk that the epidemiological surveillance services must investigate. Full article
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13 pages, 567 KiB  
Article
Correlation Between Dental Health and Aesthetic Components of Malocclusion in Junior High and High School Students: An Epidemiological Study Using Item Response Theory
by Hiromi Sato, Yudai Shimpo, Toshiko Sekiya, Haruna Rikitake, Minami Seki, Satoshi Wada, Yoshiaki Nomura and Hiroshi Tomonari
J. Clin. Med. 2025, 14(13), 4802; https://doi.org/10.3390/jcm14134802 - 7 Jul 2025
Viewed by 395
Abstract
Background: The Index of Orthodontic Treatment Need (IOTN) is widely used to assess the need for orthodontic treatment. IOTN consists of the Dental Health Component (DHC) and the Aesthetic Component (AC), evaluating malocclusion morphologically and aesthetically, respectively. However, the discriminatory power of individual [...] Read more.
Background: The Index of Orthodontic Treatment Need (IOTN) is widely used to assess the need for orthodontic treatment. IOTN consists of the Dental Health Component (DHC) and the Aesthetic Component (AC), evaluating malocclusion morphologically and aesthetically, respectively. However, the discriminatory power of individual DHC items and their relationship with AC grades remain unclear. Objective: This study aimed to evaluate the effectiveness of individual DHC items in school dental examinations and investigate their contribution to AC grades among junior high and high school students. Methods: A total of 726 students (443 males, 283 females; aged 12–18 years) from Tsurumi University Junior and Senior High School, excluding 168 students undergoing or having completed orthodontic treatment, were included. Nine calibrated orthodontists assessed DHC and AC using IOTN during standardized school examinations. The discriminatory power and information precision of DHC items were evaluated by Item Response Theory (IRT) analysis using three-, two-, or one-parameter logistic models depending on convergence. Correspondence analysis visualized the correlation between DHC and AC grades. Simple linear regression analyzed the contribution of each DHC item to AC grades. Results: Orthodontic treatment need was identified in 21.1% of students. Females showed a higher rate of treatment need than males. Correspondence analysis suggested that aesthetic evaluations were more lenient than morphological evaluations. IRT and regression analysis revealed that crowding (4.d), increased overjet (2.a), and increased overbite (2.f) demonstrated high discriminatory power and significant contributions to AC grades. Conclusions: Among the DHC items, crowding, increased overjet, and increased overbite had higher discriminatory power for malocclusion and contributed more significantly to AC evaluations compared to other items. Full article
(This article belongs to the Section Dentistry, Oral Surgery and Oral Medicine)
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25 pages, 668 KiB  
Article
Bridging the Energy Divide: An Analysis of the Socioeconomic and Technical Factors Influencing Electricity Theft in Kinshasa, DR Congo
by Patrick Kankonde and Pitshou Bokoro
Energies 2025, 18(13), 3566; https://doi.org/10.3390/en18133566 - 7 Jul 2025
Viewed by 383
Abstract
Electricity theft remains a persistent challenge, particularly in developing economies where infrastructure limitations and socioeconomic disparities contribute to illegal connections. This study analyzes the determinants influencing electricity theft in Kinshasa, the Democratic Republic of Congo, using a logistic regression model applied to 385 [...] Read more.
Electricity theft remains a persistent challenge, particularly in developing economies where infrastructure limitations and socioeconomic disparities contribute to illegal connections. This study analyzes the determinants influencing electricity theft in Kinshasa, the Democratic Republic of Congo, using a logistic regression model applied to 385 observations, which includes random bootstrapping sampling for enhanced stability and power analysis validation to confirm the adequacy of the sample size. The model achieved an AUC of 0.86, demonstrating strong discriminatory power, while the Hosmer–Lemeshow test (p = 0.471) confirmed its robust fit. Our findings indicate that electricity supply quality, financial stress, tampering awareness, and billing transparency are key predictors of theft likelihood. Households experiencing unreliable service and economic hardship showed higher theft probability, while those receiving regular invoices and alternative legal energy solutions exhibited lower risk. Lasso regression was implemented to refine predictor selection, ensuring model efficiency. Based on these insights, a multifaceted policy approach—including grid modernization, prepaid billing systems, awareness campaigns, and regulatory enforcement—is recommended to mitigate electricity theft and promote sustainable energy access in urban environments. Full article
(This article belongs to the Section F4: Critical Energy Infrastructure)
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