Search Results (353)

Anaerobic germination (AG) is a pivotal trait for successful direct-seeded rice cultivation, encompassing rainfed and irrigated conditions. Elite rice cultivars are often vulnerable to flooding during germination, resulting in poor crop establishment. This drawback has led to the exploration of AG-tolerant rice landraces, which offer valuable insights into the genetic underpinnings of AG tolerance. Over the years, substantial progress has been made in identifying significant quantitative trait loci (QTLs) associated with AG tolerance, forming the basis for targeted breeding efforts. However, the intricate gene regulatory network governing AG tolerance remains enigmatic. This comprehensive review presents recent advances in understanding the physiological and genetic mechanisms underlying AG tolerance. It focuses on their practical implications in breeding elite rice cultivars tailored for direct-seeding systems. Full article

Durum wheat, the world’s second most cultivated wheat species, is a staple crop, critical for global food security, including in Ethiopia where it serves as a center of diversity. However, climate change and genetic erosion threaten its genetic resources, necessitating genomic studies to support conservation and breeding efforts. This study characterized genome-wide diversity, population structure (STRUCTURE, principal coordinate analysis (PCoA), neighbor-joining trees, analysis of molecular variance (AMOVA)), and selection signatures (F_ST, Hardy–Weinberg deviations) in Ethiopian durum wheat by analyzing 376 genotypes (148 accessions) using an Illumina Infinium 25K single nucleotide polymorphism (SNP) array. A set of 7842 high-quality SNPs enabled the assessments, comparing landraces with cultivars and breeding populations. Results revealed moderate genetic diversity (mean polymorphism information content (PIC) = 0.17; gene diversity = 0.20) and identified 26 loci under selection, associated with key traits like grain yield, stress tolerance, and disease resistance. AMOVA revealed 80.1% variation among accessions, with no significant differentiation by altitude, region, or spike density. Landraces formed distinct clusters, harboring unique alleles, while admixture suggested gene flow via informal seed exchange. The findings highlight Ethiopia’s rich durum wheat diversity, emphasizing landraces as reservoirs of adaptive alleles for breeding. This study provides genomic insights to guide conservation and the development of climate-resilient cultivars, supporting sustainable wheat production globally. Full article

Drought stress is a critical abiotic constraint on agricultural productivity, particularly affecting crops like pepper (Capsicum annuum L.), which are highly susceptible to water deficits due to their physiological characteristics. The present study investigated the impact of a 40% reduction in irrigation on yield, macronutrient concentrations, and fruit quality across several pepper genotypes. The cultivars evaluated included two landraces, namely ‘JO109’ and ‘JO204’ (Capsicum annuum var. grossum), as well as the California cultivar ‘Yolo Wonder’ and the commercial F1 hybrid ‘Sammy RZ’, which served as controls. The experiment was conducted at the greenhouse facilities of the Laboratory of Vegetable Production, Agricultural University of Athens. Under reduced irrigation, most of the cultivars studied exhibited a decline in yield, which was attributed to a decrease in fruit number in ‘Yolo Wonder’ and a reduction in fruit weight in both ‘JO204’ and ‘Sammy’. In contrast, the landrace ‘JO109’ exhibited consistent yields under both growing conditions, a response likely attributed to elevated K concentration in the leaves and lower Na accumulation in the fruit, indicating enhanced tolerance to water deficit. A decline in leaf K concentration was observed in response to drought stress, while concomitantly increased concentrations of Na, Ca and Mg were recorded. Among fruit macronutrients, only Ca showed a significant decrease under reduced irrigation. Furthermore, fruit firmness (FF), titratable acidity (TA) and total soluble solids content (TSSC) exhibited higher levels under drought stress, particularly in ‘JO109’, while TA remained unaltered. These findings highlight the potential of landraces such as ‘JO109’ to be utilized in breeding programs aimed at enhancing resilience, while maintaining pepper fruit quality under limited water availability. Full article

The globe artichoke (Cynara cardunculus L. var. scolymus) is a Mediterranean crop valued for its edible capitula and bioactive compounds. Post-harvest residual leaves are among the main by-products of artichoke cultivation and remain largely underutilized. This study reports a comprehensive characterization of the residual leaves of Carciofo di Malegno, an Alpine artichoke landrace. Comparative analysis was conducted against leaves from two commercial cultivars and a commercial herbal tea product. HPLC analysis revealed that Carciofo di Malegno exhibited the lowest levels of secondary metabolites. Cynaropicrin content was 0.52 ± 0.03 mg/g, lower than in the commercial samples, while the phenolic compounds were below the quantification limit. Proximate analysis indicated a distinctive nutritional profile, with significantly higher ash (8.01 ± 0.04%) and crude fiber (35.75 ± 0.29%) contents compared to all reference samples. These findings highlight the potential of Carciofo di Malegno residual leaves as a sustainable source of nutrients for functional food and nutraceutical applications. Their low content of bitter sesquiterpene lactones may enhance palatability, supporting their valorisation within circular economy frameworks. Moreover, their use may contribute to the in situ conservation of this landrace, reinforcing the link between agrobiodiversity preservation and the sustainable exploitation of agricultural by-products. Full article

The fig (Ficus carica L.) is one of the oldest fruit crops cultivated in arid and semi-arid regions, valued for both its nutritional and economic importance; thus, ensuring sustainable fig production under climate change conditions is very important, as water scarcity increasingly affects fruit quality and production. Selecting and preserving resilient varieties among traditional varieties, representing centuries of local adaptation, is a vital strategy for addressing the challenges driven by climate change. In this context, this study assessed the physiological and biochemical parameters of the leaves of four fig landrace varieties (Fassi, Ghouddane, Nabout, and Ounq Hmam) grown in three different Mediterranean transitional zones of northern Morocco (Chefchaouen, Taounate, and Taza), during a single timepoint assessment conducted in late August 2023. The combined effects of location, variety, and their interactions on chlorophyll fluorescence (F_v/F_m), Soil Plant Analysis Development (SPAD) index, total chlorophyll content (ChlT), canopy temperature depression (CTD), proline content, protein content, total soluble sugar (TSS), hydrogen peroxide (H₂O₂), and malondialdehyde (MDA) were determined. Significant variation was observed among varieties and locations, with the location effect being observed for proline content, protein content, TSS, CTD, and ChlT, while variety had a stronger influence on SPAD, F_v/F_m, H₂O₂, and MDA. The results showed that Nabout and Ounq Hmam varieties had the greatest photosynthetic efficiency, as indicated by their elevated SPAD index, ChlT, and F_v/F_m values, and showed lower sensitivity to oxidative stress (low proline content, H₂O₂, and MDA levels). In contrast, Ghouddane and Fassi displayed better stress tolerance, presenting higher levels of oxidative stress markers. Among locations, Chefchaouen showed the highest protein, TSS, H₂O₂, and MDA levels, reflecting active stress tolerance mechanisms. These variations were confirmed by principal component analysis, which revealed a clear separation between photosynthetically efficient varieties (Nabout and Ounq Hmam) and stress-tolerant varieties (Ghouddane and Fassi). More than a conventional crop physiology study, this work highlights the adaptive strategies in traditional Mediterranean fig germplasm that could be crucial for climate change adaptation. While our findings are limited to a single season, they offer valuable, practical insights that can inform grower decision-making in the near term, especially when considered alongside local knowledge and additional research. Full article

Common beans (Phaseolus vulgaris L.) are considered a socially and economically important crop, with the biggest growers in India, Myanmar, and Brazil. Traditionally, common beans are also grown in most parts of Europe, including Latvia, where cultivation areas have remained relatively constant since the middle of the last century. This is explained by the plant’s higher thermal requirements compared to peas and faba beans more widely grown here. Despite this, landraces adapted to local conditions have been developed, whose origin and potential relationship with another European common bean germplasm is very limited. Therefore, the study aimed to characterise the morphology of the common bean germplasm collected and grown in Latvia to identify the most valuable material for further crop development and evaluate the local landraces in the European common bean germplasm context. The 28 genotypes representing Latvian landraces and European reference genotypes were phenotyped using 26 traits of bean seeds, pods, leaves, flowers, and stems, which were evaluated according to an internationally applied methodology. Latvian varieties showed phenotypical variability and characteristics that were different from those found in other European regions, showing the significance of the germplasm under study and highlighting the need for conservation. Local varieties (landraces) are reservoirs of unique genetic traits. Their adaptability to local environmental conditions, resistance to pests and diseases, and their potential to enhance nutritional quality make them invaluable resources for in situ conservation efforts and targeted genetic improvement programmes. Emphasising the utilisation of these landraces can contribute to sustainable agriculture, climate resilience, and food security. Full article

Meeting the rising demand for staple grains now requires cultivars that combine high yield, enhanced nutritional value, and strong chemical resilience. Blue-kernel landraces from central Mexico are rich in anthocyanins yet remain highly susceptible to post-emergence herbicides, whereas modern hybrids detoxify these compounds through cytochrome P450 (CYP450) enzymes. We crossed the anthocyanin-rich variety Polimaize with a CYP450-tolerant hybrid and evaluated the two parents and their F₁ segregants (designated “White” and “Yellow”) under greenhouse applications of mesotrione (75 g a.i. ha⁻¹), nicosulfuron (30 g a.i. ha⁻¹), and their mixture. Across 160 plants, the hybrid retained 95% of control dry matter and showed ≤7% foliar injury under all treatments, whereas Polimaize lost 28% biomass and exhibited 36% injury after nicosulfuron. The Yellow class matched hybrid performance while maintaining a blue pericarp and a β-carotene-rich endosperm, demonstrating that nutritional and agronomic traits can be stacked. The White class displayed heterosis-driven compensatory growth, exceeding its untreated biomass by 60% with nicosulfuron and by 82% with the mixture despite transient bleaching. Chlorophyll and carotenoid fluorescence revealed rapid, zeaxanthin-linked photoprotection in all tolerant genotypes, consistent with accelerated CYP450-mediated detoxification. These findings show that broad-spectrum herbicide tolerance can be introgressed into pigment-rich germplasm through conventional breeding, providing a non-transgenic path to herbicide-ready, anthocyanin-rich maize. The strategy preserves local biodiversity while delivering cultivars suited to intensive, weed-competitive agriculture and offers a template for integrating metabolic resilience into other native crops. Full article

As a globally important leguminous crop, soybean (Glycine max L.) serves as a vital source of edible oils and proteins for humans and livestock. Oils in leaves can help crops combat fungal infections, adapt to temperature changes via fatty acid modulation, and support resource recycling during leaf senescence. However, accumulating oils in leaves is a fundamental challenge due to the need to balance the inherently competing photosynthesis and fatty acid biosynthesis processes within chloroplasts. RETICULATA-RELATED (RER), known to regulate chloroplast function and plastid metabolism in Arabidopsis, plays an essential role in leaf development. Here, 14 non-redundant GmRER genes were identified in soybean and phylogenetically classified into four subclades. Most Arabidopsis RER genes were evolutionarily preserved as gene duplicates in soybean, except for GmRER5 and GmRER6. RNA secondary structures spanning the coding sequences (CDSs), the 5′- and 3′- untranslated regions (UTRs) of GmRERs, displayed exceptional structural plasticity in CDSs, while exhibiting limited conservation in UTRs. In contrast, protein structures retained conserved folds, underscoring evolutionary constraints on functional domains despite transcriptional plasticity. Notably, GmRER4a and GmRER4b represented an exceptional case of high similarity in both protein and RNA structures. Expression profiling across fourteen tissues and three abiotic stress conditions revealed a dynamic shift in expression levels between leaf-predominant and root-enriched GmRER paralogs after stress treatments. A comparative transcriptome analysis of six soybean landraces further revealed transcriptional polymorphism in the GmRER family, which was associated with the expression patterns of lipid biosynthesis regulators. Our comprehensive characterization of GmRERs may offer potential targets for soybean breeding optimization in overall plant oil production. Full article

Historical landrace collections, such as the Watkins Wheat Collection, harbor immense genetic diversity that holds the potential to transform our understanding of crop resilience and adaptation. This study employs a novel integrative phenotyping approach to dissect regional adaptation and nitrogen stress resilience in Watkins wheat landraces under contrasting nitrogen regimes. By leveraging a multidimensional framework, including stress indices, geographic analyses, and multivariate clustering, this work identifies 48 landraces with contrasting responses to nitrogen limitation. High-performing genotypes, such as WATDE0013 and WATDE0020, exhibited superior biomass partitioning under stress, reflecting historical adaptation to low-input agroecosystems spanning Europe, Asia, and North Africa. These findings emphasize the value of phenotypic plasticity in nitrogen use efficiency (NUE) improvement. In contrast, low-performing accessions, such as WATDE1055, highlighted vulnerabilities to nitrogen limitation, illustrating the importance of comprehensive phenotypic screening for gene-bank prioritization. Regional adaptation patterns, elucidated through geographic analyses, uncovered stress-resilient genotypes clustered in historically marginal agricultural regions, revealing adaptive traits shaped by environmental selection pressures. Principal component analysis (PCA) and hierarchical clustering delineated five distinct phenotypic groups, enhancing our understanding of evolutionary trajectories within this collection. This integrative approach transcends traditional phenotyping methods by linking phenotype, genotype, and geographic context to uncover nuanced adaptive traits. By bridging gene bank conservation with a systems-level understanding of crop evolution, this study provides actionable insights and a robust framework for breeding climate-resilient wheat varieties. These findings underscore the critical role of preserving genetic diversity in landraces to address global challenges in nitrogen stress and climate resilience. Full article

Pearl millet is a cereal crop vital for food security in Africa and Asia. It is widely adapted for dual-purpose production, providing grain for human consumption and fodder for livestock, particularly during dry seasons. This study aimed to evaluate three dual-purpose pearl millet genotypes from Namibia and South Africa while exploring prospects for future production practices. Growth analysis is essential for quantitatively assessing crop growth, development, and production. A growth analysis study was conducted by collecting and evaluating weather data, water use efficiency, and crop growth parameters that are valuable for modelling, allowing for observing and quantifying strengths and weaknesses between varieties for food and fodder or as dual-purpose varieties. The analysis focused on water use, plant height, fractional radiation interception, panicle number, tiller number, flowering date, stem diameter, panicle length, dry matter distribution, harvest index, grain yield, and panicle diameter, under well-watered, supplementary irrigation, and rainfed conditions. The landrace achieved a higher yield under well-watered conditions than the hybrid and improved varieties. The hybrid pearl millet produced a greater fodder yield than the improved short variety in well-watered and water-limited treatments. The improved variety suits grain production, whereas the landrace and hybrid are more suitable for dual-purpose production. The landrace performed well in rainfed and irrigated situations across the three seasons. The landrace (Kantana) recorded the highest grain yield (1.01 kg m⁻²), followed by the hybrid (Agrigreen) (0.97 kg m⁻²), while the improved variety (Kangara) had the lowest grain yield (0.74 kg m⁻²). Full article

The higher adaptation of landraces to local agroclimatic conditions resulting from natural and moderate artificial selection by farmers within specific environments makes them a crucial source of alleles and genotypes for cultivation and breeding programs. Unlike modern cultivars, which have been developed under more intense artificial selective pressures, landraces exhibit a broader genetic base that has been documented in landrace collections for many crops. This review provides an overview of the importance of genetic resource valorisation in legume species, focusing on cultivated species of the Lupinus genus, particularly white lupin (Lupinus albus). On the one hand, legumes, including Lupins, are considered a crucial alternative source of protein within the framework of more sustainable agriculture. On the other hand, they are often neglected species in terms of breeding efforts, despite receiving increasing attention in recent years. Here, we also report on the latest advances in the development of genomic tools, such as the novel pangenome of white lupin and the identification of markers and loci for target adaptation traits, such as tolerance to alkaline soils, which can effectively support the breeding of Lupinus albus, especially for the introgression of desirable alleles from locally adapted varieties. Full article

Garlic, an asexually propagated crop, exhibits significant variation in its commercial traits and bioactive compounds. Despite its horticultural significance, the genetic pool available for breeding strategies is limited. This study aimed to assess the existing diversity within a popular garlic landrace from the region of “Nea Vissa”, Evros, Greece, focusing on phenotypic, biochemical, and molecular variation. In particular, bulb morphology, nutritional content, and organosulfur profiles were evaluated, along with genetic characterization using simple sequence repeat (SSR) markers to analyze intra-specific genetic variation. Our results revealed three distinct genetic clusters with moderate to low intra-varietal diversity. Morphological and biochemical characterization showed significant intra-specific diversity in both bulb morphology and nutritional content. Solid-phase microextraction (SPME) coupled with gas chromatography–mass spectrometry (GC–MS) analysis identified key volatile compounds, including allyl methyl disulfide and trisulfide, 1,2-dithiacyclopentene, cis-1-propenyl propyl disulfide, and cis-1-propenyl methyl disulfide in high abundances, suggesting that these were the predominant compounds characterizing the population. Our findings could be implemented to further enhance key phytonutrients in the local garlic population through breeding programs, targeting clones with high nutritional value and improved flavor and supporting germplasm conservation and utilization. Full article

Tartary buckwheat is an important medicinal and edible crop known for its significant health benefits to humans. While numerous Tartary buckwheat germplasm resources have been collected in China, the genetic diversity and core germplasm resources remain largely unclear. The aim of this work was to analyze the genetic variability and construct a core germplasm collection of Tartary buckwheat. Fifteen highly polymorphic SSR markers were used to investigate 659 Tartary buckwheat accessions. A total of 142 alleles were marked, with an average of 9.47 alleles per locus. Genetic variability analysis revealed that these collected accessions exhibit high genetic diversity and can be classified into seven subgroups. Among wild, landrace, and improved accessions, the wild accession showed the highest genetic diversity, while no significant genetic variation was observed between the landrace and improved accessions. Based on genetic diversity and population structure analyses, a core germplasm collection containing 165 accessions (47 wild, 92 landrace, and 26 improved) was constructed, ensuring high genetic diversity and good representation. This study not only highlighted the genetic differences among Tartary buckwheat accessions, but also provided insights into the population structure and the development of a core germplasm collection. It provided important references for the conservation of genetic diversity and the genetic improvement of Tartary buckwheat. Full article

Quinoa (Chenopodium quinoa, Amaranthaceae) is a pseudocereal native to the Andes of South America that contains high protein content and adequate nutrient levels. Peru possesses an abundant morphological diversity of quinoas and is among the top producers and exporters worldwide of this precious crop. However, knowledge about the genetic and population components of quinoa from the Peruvian Andes is still limited. Here, we used 13 microsatellite markers to determine the genetic diversity and population structure of 105 landraces of quinoa cultivated in 11 provinces of Ayacucho, the southern Peruvian Andes. A total of 285 bands were manually scored, generating a 105 × 285 presence/absence data set. Principal coordinate analysis, similar to a dendrogram using the UPGMA clustering algorithm, showed that quinoa from Ayacucho is grouped into three clusters without a clear geographic component. Estimation of the genetic diversity indices was conducted considering the three populations (C1: south 1, C2: south 2, C3: north) determined by STRUCTURE analysis, showing mean expected heterozygosity was 0.08, which may be attributed to high rates of inbreeding and genetic drift, as Ayacucho suffered decades of sociopolitical violence, promoting the migration of farmers. The highest population divergence (F_ST) was exhibited for C2 and C3 (0.03), whereas the lowest was for C1 and C3 (0.02). Analysis of molecular variance revealed the greatest variation within populations (80.07%) and indicated that variability between populations is 19.93%. Microsatellite markers were effective; however, more studies of the genetic components of quinoa from other Peruvian Andean localities are still needed. We expect that this work will help pave the way towards the development of modern breeding programs of quinoa in Peru, with accurate strategies for the conservation of this nutritious crop. Full article

In Mesoamerica, maize is one of the most important food crops, with México being the center of its origin, domestication, and diversity. The state of Chiapas in southern Mexico is one of the areas with the highest maize landrace diversity. However, information on its genetic diversity, conservation status, and the potential use of maize landraces throughout the entire Chiapas region is lacking. One region where local farmers use and preserve a wide diversity of maize landraces is the Zoque region. Until now, however, the genetic diversity of these maize landraces has not been studied. The aim of this study was to analyze the diversity and genetic structure of maize cultivated in the Zoque region, from Chiapas, Mexico, by using 17 landraces and 48 ISSR loci. The analysis revealed two genetic groups based on geographical origin. The genetic diversity level was moderate (Hbay = 0.29 and I = 0.36) and distributed mainly within landraces (70%). The maize landrace blanco belongs to the Tuxpeño race and Bacalito blanco belongs to the Olotillo race from the Miguel Hidalgo municipality have greater diversity values (Hbay = 0.36, I = 0.45 and Hbay = 0.35, I = 0.45, respectively). The results indicated that the maize landraces cultivated in the Zoque region, Chiapas, Mexico, constitute a valuable genetic resource that can be used for genetic improvement and in conservation programs. Full article