Search Results (30)

Variety characterization is crucial in the seed trade, particularly for protecting variety rights. However, the identification of roselle (Hibiscus sabdariffa L.) varieties, known for their beneficial effects on human health and high processing potential, has traditionally relied on morphological traits due to limited genetic information. To investigate genetic polymorphisms of roselle germplasms and to develop breeder-accessible genotyping tools, this study first phenotyped a roselle collection from diverse geographical origins for the selection of core varieties, and then utilized double-digest restriction-associated DNA sequencing (ddRAD-seq) to identify 53,746 single nucleotide polymorphisms (SNPs) across 17 core varieties. Cluster analysis of the SNP data effectively grouped varieties with similar genetic backgrounds. From this genetic information, we selected nine SNPs as a toolkit to simplify core variety discrimination. These SNPs were then converted into breeder-friendly kompetitive allele-specific PCR (KASP) markers, facilitating the classification of an additional 54 roselle accessions. In conclusion, this research contributes novel insights into the genetic relationships among roselle varieties, and establishes a robust framework utilizing ddRAD-seq and KASP markers for improved genetic resource identification and application in breeding programs. Full article

In China, PBR (Plant Breeder’s Right) applications of chrysanthemum rank first among all of the applications of ornamental crops in China due to the plant’s significant ornamental, edible, and medicinal values. However, issues of variety infringement and disputes have become increasingly prominent, and traditional molecular markers are difficult to use due to the high heterozygosity and complex ploidy of chrysanthemum. Our study explored the availability of MNP (Multiple Nucleotide Polymorphism) markers in this regard. In total, 30 representative varieties of five types were selected for the screening of MNPs, and another 136 varieties were selected for validation of the screened MNPs. Based on ddRAD-seq (Double Digest Restriction site-associated DNA sequencing) of the 30 varieties, 26,147 SNPs were screened for genetic analysis，and 487 MNPs were screened with a length from 139 to 274 bp, an average of 6.6 SNPs individually, and a repeatability rate of 99.73%. Among the 487 MNPs, 473 MNP markers were found to cover all 27 chromosomes of chrysanthemum. Performance of our MNPs in the 136 varieties was similar to those in the 30 varieties, where the average Ho (observed heterozygosity) was 71.48%, and the average DP (discriminative power) was 82.77%, preliminarily indicating the stability of the 487 MNPs. On the other hand, clustering results based on the 487 MNPs were also generally consistent with those based on the 26,147 SNPs, as well as those based on phenotypic traits, and initial grouping, likewise, further indicating the robust capability of our MNPs in variety discrimination, which is similar to their correspondence with numerous SNPs. Therefore, our MNP markers have great potential in the accurate and rapid identification of chrysanthemum varieties, and, accordingly, in fostering breeding innovation and promoting chrysanthemum marketing. Full article

The interplay between intellectual property rights for new plant varieties and public interests, particularly farmers’ rights, is critically examined within the context of global agricultural practices and Sustainable Development Goals (SDGs). According to the Agreement on Trade-Related Aspects of Intellectual Property Rights (TRIPS), World Trade Organization (WTO) members shall establish a mechanism to grant effective protection to new plant varieties. There are two typical compliance mechanisms with TRIPS: the model developed by the International Convention for the Protection of New Varieties of Plants (UPOV Convention) and India’s sui generis system. A comparison from the sustainable development perspective is conducted through the textual analysis of the regulations of each model. The results show that the UPOV Convention cannot advance the achievement of Sustainable Development Goals and might have adverse effects. Conversely, India’s sui generis system represents a more balanced approach, addressing the needs of the farmers, the community, and environmental protection alongside those of breeders and benefitting sustainable development. The conclusion advocates for revising the UPOV Convention to incorporate broader concerns, including farmers’ rights and environmental sustainability, to ensure a more equitable approach to the protection of plant varieties. Full article

Farming is a major sector required for any nation to become self-sustainable. Quality seeds heavily influence the effectiveness of farming. Seeds cultivated by breeders pass through several entities in order to reach farmers. The existing seed supply chain is opaque and intractable, which not only hinders the growth of crops but also makes the life of a farmer miserable. Blockchain has been widely employed to enable fair and secure transactions between farmers and buyers, but concerns related to transparency and traceability in the seed supply chain, counterfeit seeds, middlemen involvement, and inefficient processes in the agricultural ecosystem have not received enough attention. To address these concerns, a blockchain-based solution is proposed that brings breeders, farmers, warehouse owners, transporters, and food corporations to a single platform to enhance transparency, traceability, and trust among trust-less parties. A smart contract updates the status of seeds from a breeder from $submitted$ to $approved$. Then, a non-fungible token (NFT) corresponding to approved seeds is minted for the breeder, which records the date of cultivation and its owner (breeder). The NFT enables farmers to keep track of seeds right from the date of their cultivation and their owner, which helps them to make better decisions about picking seeds from the correct owner. Farmers directly interact with warehouses to purchase seeds, which removes the need for middlemen and improves the trust among trust-less entities. Furthermore, a tender for the transportation of seeds is auctioned on the basis of the priority location $lo{c}_p$, Score, and bid_amount of every transporter, which provides a fair chance to every transporter to restrict the monopoly of a single transporter. The proposed system achieves immutability, decentralization, and efficiency inherently from the blockchain. We implemented the proposed scheme and deployed it on the Ethereum network. Smart contracts deployed over the Ethereum network interact with React-based web pages. The analysis and results of the proposed model indicate that it is viable and secure, as well as superior to the current seed supply chain system. Full article

Forest trees are beleaguered by the ever-increasing onslaught of invasive pests and pathogens, with some species in danger of functional extinction. Recent successes in developing resistant populations using traditional tree breeding assures that some of the affected species will persist in future forests. However, the sheer number of threatened species requires increases in breeding efficiency. The time is right to consider how the use of genomic resources might aid breeding efforts in the next 20 years. Any operational benefit of genomic resources will be minimal without closer collaboration between tree breeders, forest managers, and genomic researchers. We reflect here on what attributes were responsible for the success of traditional resistance breeding programs and whether advances in genomics can realistically accelerate breeding. We conclude that the use of genomics to directly advance resistance breeding efforts in the next 20 years will be limited. Major obstacles will include factors such as the undomesticated nature of most tree species, the quantitative genetic nature of resistance in many species, and the lack of adequate funding to accelerate and more fully develop genomic resources. Despite these limitations, genomic tools have potential to help increase our understanding of the nature of resistance, and the genetic variability in the host, which can aid in the deployment of resistant populations and may assist in marker-assisted selection, particularly for major gene resistance. Full article

Plant breeders develop competitive, high-yielding, resistant crop varieties that can cope with the challenges of biotic stresses and tolerate abiotic stresses, resulting in nutritious food for consumers worldwide. To achieve this, plant breeders need continuous and easy access to plant genetic resources (PGR) for trait screening, to generate new diversity that can be built into newly improved varieties. International agreements such as the Convention on Biological Diversity (CBD), the International Treaty on Plant Genetic Resources for Food and Agriculture (ITPGRFA) and the Nagoya Protocol recognised the sovereign rights of countries over their genetic resources. Under the CBD/Nagoya Protocol, countries are free to establish specific national legislations regulating germplasm access and benefit-sharing to be negotiated bilaterally. Consequently, access to PGR became increasingly restricted and cumbersome, resulting in a decrease in germplasm exchange. The ITPGRFA attempted to ease this situation by establishing a globally harmonised multilateral system (MLS). Unfortunately, the MLS is (still) restricted to a limited number of food and forage crops, with very few vegetable crops. Easy and continuous access to genetic diversity combined with equitable and fair sharing of derived benefits is a prerequisite to breeding new varieties. Facilitated access contributes to sustainable crop production and food and nutrition security; therefore, access to and, consequently, use of PGRFA needs to be improved. Thus, the authors recommend, among others, expanding the scope of the ITPGRFA to include all PGRFA and making them and all related information accessible under a Standard Material Transfer Agreement (SMTA) combined, if necessary, with a subscription system or a seed sales tax. Such a transparent, functional and efficient system would erase legal uncertainties and minimise transaction costs for conservers, curators and users of genetic resources, thus aiding plant breeders to fulfil their mission. Full article

Chrysanthemums represent the second most important cut flower after rose on the global commercial market. The phenomenal importance and global popularity of chrysanthemums have attracted breeders’ attention, resulting in the release of vast numbers of cultivars. Identifying these cultivars is crucial to protecting breeders’ intellectual property rights and improving the efficiency of breeding. Distinguishing chrysanthemum genotypes based on their morphological characteristics is challenging as they vary highly within this group, hence requiring the use of efficient molecular markers. In this study, we evaluated the genetic diversity of 57 spray-type chrysanthemum cultivars bearing white, ivory, and cream-colored flowers. A total of six loci were evaluated regarding their polymorphism efficiency across the tested cultivars. Allele numbers ranged from 2 to 6, with a mean of 3.5 alleles per locus. The average polymorphism information content (PIC) was 0.53 for six SSR markers. Cluster analysis of genetic relationships using the UPGMA method showed a genetic distance of 0.31 to 1.00, and the 57 white variants of chrysanthemum cultivars were characterized using the tested SSR markers. However, two sets of cultivars, namely, Pure Angel–Neba and Ladost–White wing, exhibited total genetic similarity and hence could not be discriminated. These results provide efficient SSR markers that can be used to identify chrysanthemum cultivars (and assess their genetic relationships) that cannot be discriminated based on phenotype. Full article

A 3-year-old Chihuahua was presented because of exercise intolerance, respiratory distress, and syncopal episodes. At the age of 10 weeks, the dog was diagnosed with a congenital small left-to-right shunting ventricular septal defect and a mild right ventricular outflow tract obstruction via echocardiography. At that time, the dog was asymptomatic, but the breeder’s veterinarian heard a murmur. Both cardiac defects were judged to be clinically non-relevant at that time. However, at 3 years of age, echocardiography revealed a severe right ventricular obstruction, known as a double-chambered right ventricle, along with right-to-left shunting via the ventricular septal defect. Because of chronic hypoxemia due to the right-to-left shunting, erythrocytosis developed. Flow reversal via the shunt was caused by a progressively worsening right ventricular obstruction leading to a supra-systemic right ventricular systolic pressure. Because of the poor prognosis, the dog was euthanized, and the heart was submitted for post-mortem examination. Gross pathologic findings revealed the close proximity of the right ventricular obstructive lesion to the ventricular septal defect. Histopathology revealed localized muscular hypertrophy and severe endocardial fibrosis. The suspected pathogenesis of the progressive obstruction was infiltrative myocardial fibrosis due to turbulent blood flow from the left-to-right shunting ventricular septal defect, as described in humans. Full article

The beef cattle industry is an important part of herbivorous animal husbandry and an important industry to enrich the dietary structure of residents and promote the income of farmers and herdsmen. The cow is an important foundation to support the healthy development of the beef cattle industry, which is related to the stability of cattle sources and the sustainable development of the industry. However, in recent years, the shortage of cows in our country has led to the shortage of cattle resources and the high price of calves, which has restricted the further development of our beef cattle industry. In order to explore the factors that affect the decision-making behavior behind cow breeding and to find the right policy to mobilize the enthusiasm for cow breeding, based on the field survey of five provinces (cities and regions), including Inner Mongolia Autonomous Region and Ningxia Hui Autonomous Region, this paper conducts an empirical analysis through the Logit ISM model. The results show that market expectation is the surface factor that directly affects the decision-making behavior of cow breeding. The influencing factors of the middle layer are policy propaganda, policy subsidies, breeding years, and feeding methods. The deep root factors are the age of the breeder, the amount of loan, and whether to plant feed crops. Based on this, this paper proposes that we should actively promote the importance of cow breeding, strengthen policy support for cow breeding, formulate scientific and reasonable subsidy policies for cows, innovate financial support methods to solve the problem of fund shortage of farmers, and develop forage resources and reduce the breeding cost of cows. Full article

In an effort to protect intellectual property beyond patent and plant breeders’ rights and as a marketing tool to increase and maintain sales, the creation and trademarking of brand names for fruit is growing and gaining importance in the fruit industry. New fruit varietals, especially from long-lived tree fruits and vines, take many years of research to develop and bring to market. Differentiating what is essentially a commodity product is difficult, especially given bulk sales and packaging limitations. A distinctive brand name can be a powerful method of differentiating a new fruit from its competitors. To the best of our knowledge there has not been any study examining the process of brand name creation for fruits. This English language literature review examines the brand name creation process overall. A step-by-step process is discussed and situated in the context of fruits. Research on the overall process is dated: We propose a new preliminary research step to improve the process and discuss the need for future research on the role of the Internet and social media in the naming process. An overview of trademark considerations is provided. Knowledge of this process will assist breeders and marketers with brand name creation whether achieved internally or through an external agency or combination thereof. Full article

The chrysanthemum is one of the most economically important ornamental plants in the Asteraceae family. Unfortunately, the efficacy of breeding through the traditional crossing in this species is highly limited due to inefficient seed setting. Therefore, this study aimed to investigate the effect of parental components and crossing frequency on the set and germination of chrysanthemum seeds. For this purpose, seven chrysanthemum cultivars were used as parental components in 10 crossing combinations. The crossing was performed either once or twice a week, for three successive weeks, starting from November. Next, the obtained chrysanthemum seeds were collected, sown in pots in a greenhouse, and seedling growth was observed. The efficacy of the seed set, germination rate, and plant development was evaluated. The plants of the F₁ generation were brought to flowering and evaluated phenotypically in the three successive vegetative propagation cycles. Both the arrangement of parental components and pollination frequency affected the production of seeds. More seeds were obtained if pollination was performed twice a week and if the ‘Wda’ cultivar was used as the maternal component. Approximately 50–100% of the seeds were able to germinate in the greenhouse, depending on the parental components, which also affected the developmental pace of the seedlings. Nearly all of the seedlings (80–100%) developed into properly growing plants. Out of 10 parental combinations tested, 7 produced the F₁ offspring. The obtained plants varied in the shape, size, and color of their flowers. A total of eight new phenotypes were found, among which six new cultivars granted plant breeders’ rights, so far. The present research expands knowledge on how effective crossing should be performed. Full article

Categorical data derived from qualitative classifications or countable quantitative data are common in biological scientific work and crop breeding. Categorical data analyses are important for drawing correct inferences from experiments. However, categorical data can introduce unique issues in data analysis. This paper discusses common problems arising from categorical variable analysis and modeling, demonstrates the issues or risks of misapplying analysis, and suggests approaches to address data analysis challenges using two data sets from alfalfa breeding programs. For each data set, we present several analysis methods, e.g., simple t-test, analysis of variance (ANOVA), split plot analysis, generalized linear model (glm), generalized linear mixed model (glmm) using R with R markdown, and with the standard statistical analysis software SAS/JMP. The goal is to demonstrate good analysis practices for categorical data by comparing the potential ‘bad’ analyses with better ones, avoiding too much reliance on reaching a significant p-value of 0.05, and navigating the morass of ever-increasing numbers of potential R functions. The three main aspects of this research focus on choosing the right data distribution to use, using the correct error terms for hypothesis test p-values including the right type of sum of the squares (Type I, II, and III), and proper statistical models for categorical data analysis. Our results show the importance of good statistical analysis practice to help agronomists, breeders, and other researchers apply appropriate statistical approaches to draw more accurate conclusions from their data. Full article

Bacterial leaf streak (BLS) caused by bacterium Xanthomonas oryzae pv. oryzicola (Xoc) is one of the most prominent rice diseases. BLS causes a significant reduction in paddy yields. However, there are limited studies and a lack of information regarding the mechanisms and cells affected on leaf tissues severed from this disease. Therefore, in this study, sensitive paddy variety IR24 was inoculated against BLS, and the pathogen colonised mesophyll cells and some bundle sheath cells. The infection spreads rapidly towards the base and apex of the leaf, but rather slowly to the left and right sides of the leaf veins. Another experiment was performed to unravel anatomical characteristics in sensitive paddy varieties (TN1, IR24, IR5) and resistant paddy varieties (IR26, Dular, IR36) against BLS. Susceptible paddy varieties have less thick midrib and leaf lamina, a high number of bundle sheath cells at primary vascular tissue (midrib), one layer of sclerenchyma cells at the secondary vein, and more than two metaxylems at the primary vein. Resistant paddy varieties, on the other hand, consist of a relatively thickened midrib and leaf lamina, fewer bundle sheath cells at the primary vascular tissue (midrib), more than one sclerenchyma layers at the secondary vein, and two metaxylems at the primary vein. This study contributes new knowledge in identifying the level of infection in paddy fields, and helps breeders in producing resistant paddies to this disease. Full article

In Vinciane Despret’s book, What Would Animals Say If We Asked the Right Questions?, she tells stories about animals that surprise us, that challenge our assumptions about the capabilities of animals, and that illustrate how we might best come to know them. Despret engages with the history of animal science and scientific methodology, while also turning her attention to less conventional sources of animal knowledge, such as Youtube videos, domestic animal breeders, and animal caregivers. For Despret, knowing more about animals requires knowing more with them, expanding our knowledge practices beyond conventional scientific models that often emphasize distanced observation, generalization, and laboratory research. Despret highlights relational practices that function through care and curiosity, understanding animals as collaborators, with interests and valuable input. By drawing our attention to anecdotes, amateurs, and anomalies, Despret challenges scientific conventions that dismiss all three, and illuminates fascinating stories about what animals might show us if we “ask the right questions”. Full article

Cultivated oat (Avena sativa L.) is an important cereal crop that has captured interest worldwide due to its nutritional properties and associated health benefits. Despite this interest, oat has lagged behind other cereal crops in genome studies and the development of DNA markers due to its large and complex genome. RNA-Seq technology has been widely used for transcriptome analysis, functional gene study, and DNA marker development. In this study, we performed the transcriptome sequencing of 10 oat varieties at the seedling stage using the Illumina platform for the development of DNA markers. In total, 31,187,392~41,304,176 trimmed reads (an average of 34,322,925) were generated from 10 oat varieties. All of the trimmed reads of these varieties were assembled and generated, yielding a total of 128,244 assembled unigenes with an average length of 1071.7 bp and N50 of 1752 bp. According to gene ontology (GO) analysis, 30.7% of unigenes were assigned to the “catalytic activity” of the parent term in the molecular function category. Of the 1273 dCAPS markers developed using 491 genotype-specific SNPs, 30 markers exhibiting polymorphism in 28 oat varieties were finally selected. The transcriptome data of oat varieties could be used for functional studies about the seedling stage of oat and information about sequence variations in DNA marker development. These 30 dCAPS markers will be utilized for oat genetic analysis, cultivar identification, and breeders’ rights protection. Full article