Search Results (5,202)

Dehydration response element binding proteins (DREBs) have been identified as major regulators of cold acclimatization in many angiosperms. Cold stress is one of the primary abiotic stresses affecting kiwifruit growth and development. However, kiwifruit is currently one of the most widely consumed fruits worldwide because of its high nutritional value. 5-Aminolevulinic acid (5-ALA) is a nonprotein amino acid known for its distinct promotional effects on plant resistance, growth, and development. However, studies on the function of the kiwifruit DREB gene in alleviating low-temperature stress in its seedlings via exogenous 5-ALA have not been reported. Therefore, in this study, we performed a genome-wide identification of DREB gene family members in kiwifruit and analyzed the regulatory effects of exogenous 5-ALA on kiwifruit DREB genes under low-temperature stress. A total of 193 DREB genes were identified on 29 chromosomes. Phylogenetic analysis classified these genes into six subfamilies. Although there were some differences in cis-elements among subfamilies, all of them contained more biotic or abiotic stresses and hormone-related cis-acting elements. GO and KEGG enrichment analyses revealed that AcDREB plays an essential role in hormone signaling, metabolic processes, and the response to adverse stress. Under low-temperature stress, the application of exogenous 5-ALA inhibited the accumulation of APX and DHAR, promoted an increase in chlorophyll, and increased the accumulation of enzymes and substances such as 5-ALA, MDHAR, GR, ASA, GAH, and GSSH, thereby accelerating ROS scavenging and increasing the cold hardiness of kiwifruits. Functional analysis revealed that 46 differentially expressed DREB genes, especially those encoding AcDREB69, AcDREB92, and AcDREB148, which are involved in ethylene signaling and defense signaling, and, after the transcription of downstream target genes is activated, are involved in the regulation of low-temperature-stressed kiwifruits by exogenous 5-ALA, thus improving the cold tolerance of kiwifruits. Notably, AcDREB69, AcDREB92, and AcDREB148 could serve as key genes for cold tolerance. This study is the first to investigate the function of AcDREB genes involved in the role of exogenous 5-ALA in regulating low-temperature stress, revealing the regulatory mechanism by which DREB is involved in the ability of exogenous 5-ALA to alleviate low-temperature stress. Full article

Plants are constantly exposed to various environmental challenges, such as drought, flooding, heavy metal toxicity, and pathogen attacks. To cope with these stresses, they employ several adaptive strategies. This review highlights the potential of plant-derived smoke (PDS) solution as a natural biostimulant for improving plant health and resilience, contributing to both crop productivity and ecological restoration under abiotic and biotic stress conditions. Mitigating effects of PDS solution against various stresses were observed at morphological, physiological, and molecular levels in plants. PDS solution application involves strengthening the cell membrane by minimizing electrolyte leakage, which enhances cell membrane stability and stomatal conductance. The increased reactive-oxygen species were managed by the activation of the antioxidant system including ascorbate peroxidase, superoxide dismutase, and catalase to meet oxidative damage caused by challenging conditions imposed by flooding, drought, and heavy metal stress. PDS solution along with other by-products of fire, such as charred organic matter and ash, can enrich the soil by slightly increasing its pH and improving nutrient availability. Additionally, some studies indicated that PDS solution may influence phytohormonal pathways, particularly auxins and gibberellic acids, which can contribute to root development and enhance symbiotic interactions with soil microbes, including mycorrhizal fungi. These combined effects may support overall plant growth, though the extent of PDS contribution may vary depending on species and environmental conditions. This boost in plant growth contributes to protecting the plants against pathogens, which shows the role of PDS in enduring biotic stress. Collectively, PDS solution mitigates stress tolerance in plants via multifaceted changes, including the regulation of physico-chemical responses, enhancement of the antioxidant system, modulation of heavy metal speciation, and key adjustments of photosynthesis, respiration, cell membrane transport, and the antioxidant system at genomic/proteomic levels. This review focuses on the role of PDS solution in fortifying plants against environmental stresses. It is suggested that PDS solution, which already has been determined to be a biostimulant, has potential for the revival of plant growth and soil ecosystem under abiotic and biotic stresses. Full article

Fusarium head blight (FHB) is a major threat to wheat production that is caused by toxigenic species of the Fusarium graminearum complex. This study aimed to investigate the biochemical and molecular defense responses of Brazilian wheat genotypes (BRS 194, BRS Parrudo, and Frontana) with contrasting FHB susceptibilities following inoculation with F. graminearum (deoxynivalenol producer) and F. meridionale (nivalenol producer). Temporal patterns of antioxidant enzymes, defense-related enzymes, and gene expression (ABC-Transporter and Ca²⁺-ATPase) were analyzed from 12 to 96 h after inoculation. The ANOVA results revealed significant effects of genotypes, inoculation, and time after inoculation on most of the evaluated enzymatic activities. Frontana exhibited high basal activity for most enzymes, and after inoculation, the enzyme activity was higher than in other genotypes. BRS 194 presented delayed and fragmented activation patterns, particularly under DON-producing pathogen infection. According to the transcriptome results, inoculation with the NIV-producing pathogen upregulated both genes, reaching up to an 18-fold increase. BRS 194 showed an upregulated transcript pattern from the early hours after inoculation. Frontana showed increased transcript levels, reaching 12-fold, under DON-producing pathogen infection. These findings show that biochemical and molecular responses varied depending on genotype and the chemotype of the Fusarium isolate, highlighting the importance of early, coordinated defense activation in FHB resistance. Full article

Insects, the most diverse group of animals on Earth, have historically evolved under strong environmental selective pressures, particularly fluctuations in atmospheric oxygen and temperature. During the Anthropocene, rapid climate change, pollution, and habitat alteration now impose new and compounded stresses, accelerating insect decline at unprecedented rates. Here, we present a conceptual framework comparing ancient environmental drivers of insect physiology, size, and diversity with modern anthropogenic stressors. This perspective reveals how contemporary pressures such as pesticide-induced hypoxia, climate-driven size alterations, and habitat fragmentation resemble and intensify ancient evolutionary constraints. We further highlight the disruption of key ecological services and the emergence of novel biotic pressures, including intensified competition and predation. Recent advances in trait-based modeling, environmental DNA analysis, remote sensing, and AI-powered monitoring offer promising avenues for assessing these complex interactions. Integrating these modern tools with historical evolutionary insights is essential for improving risk assessments, informing conservation strategies, and mitigating the cascading effects of insect diversity loss on ecosystems. Full article

Chili peppers, a staple spice in global cuisine, hold substantial economic value due to their diverse pungency levels and distinctive aromatic profiles. In addition to their sensory attributes, Capsicum fruits exhibit notable morphological diversity and potential health benefits. While contemporary Capsicum breeding efforts have focused on the yield, shelf life, and resistance to biotic and abiotic stresses, comparatively less emphasis has been placed on the fruit quality and flavor traits increasingly valued by consumers seeking novel flavors and functional foods. We evaluated seven underutilized Capsicum landraces collected from Peru, Myanmar, and Japan and conducted an integrative analysis of their morphological traits, nutritional composition, pungency, and volatile compounds. Our findings highlight C. chinense from Myanmar and Peru as a particularly diverse species, encompassing accessions with mild to very highly pungent, elevated antioxidant content, and significant contributions to fruity aromatic notes. These findings support the development of flavor-driven chili-pepper-based food products with enhanced nutritional value and tailored pungency. Our identification of beneficial alleles also offers opportunities for interspecific breeding to produce novel cultivars aligned with evolving consumer preferences, thereby supporting the commercialization of traditional varieties, conserving genetic resources, and expanding the market potential of new cultivars. Full article

Chili (Capsicum sp.) is a high-value crop cultivated by farmers, but its production is vulnerable to weather extremes (such as irregular rainfall, high temperatures, and storms), pest and disease outbreaks, and spatially fragmented cultivation, resulting in unstable yields and income. Remote sensing (RS) and geographic information systems (GIS) offer promising tools for the timely, spatially explicit monitoring of chili crops. Despite growing interest in agricultural applications of these technologies, no systematic review has yet synthesized how RS and GIS have been used in chili production. This systematic review addresses this gap by evaluating existing literature on methodological approaches and thematic trends in the use of RS and GIS in chili crop monitoring and management. Following Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines a comprehensive literature search was conducted using predefined keywords across Scopus, Web of Science, and Google Scholar. Sixty-five peer-reviewed articles published through January 2025 were identified and grouped into different thematic areas: crop mapping, biotic stress, abiotic stress, land suitability, crop health, soil and fertilizer management, and others. The findings indicate RS predominantly serves as the primary analytical method (82% of studies), while GIS primarily supports spatial integration and visualization. Key research gaps identified include limitations in spatial resolution, insufficient integration of intelligent predictive models, and limited scalability for smallholder farming contexts. The review highlights the need for future research incorporating high-resolution RS data, advanced modelling techniques, and spatial decision-support frameworks. These insights aim to guide researchers, agronomists, and policymakers toward enhanced precision monitoring and digital innovation in chili crop production. Full article

Lycium barbarum is a traditional medicinal and edible plant species in China, exhibiting notable salt tolerance that enables cultivation in salt-affected soils. However, intensifying soil salinization has rendered severe salt stress a critical limiting factor for its fruit yield and quality. Universal stress proteins (USPs) serve as crucial regulators for plant abiotic stress responses through developmental process modulation. Nevertheless, the characteristics and functional divergence of USP gene family members remain unexplored in L. barbarum. Here, we performed genome-wide identification and characterization of the USP gene family in L. barbarum, revealing 52 members unevenly distributed across all 12 chromosomes. Phylogenetic analysis classified these LbUSP members into four distinct groups, demonstrating the integration of the conserved USP domain and diverse motifs within each group. Collinearity analysis indicated a stronger synteny of LbUSPs with orthologs in Solanum lycopersicum than with other species (Arabidopsis thaliana, Vitis vinifera, and Oryza sativa), demonstrating that gene duplication coupled with functional conservation represented the primary mechanism underlying USP family expansion in L. barbarum. In silico promoter screening detected abundant cis-acting elements associated with abiotic/biotic stress responses (MYB and MYC binding sites), phytohormone regulation (ABRE motif), and growth/development processes (Box-4 and G-box). Transcriptome sequencing and RT-qPCR validation revealed tissue-specific differential expression patterns of LbUSP8, LbUSP11, LbUSP12, LbUSP23, and LbUSP25 in roots and stems under salt stress, identifying them as prime candidates for mediating salt resistance in L. barbarum. Our findings establish a foundation for the functional characterization of LbUSPs and molecular breeding of salt-tolerant L. barbarum cultivars. Full article

Background/Objectives: RAB11 (RABA) is a type of RAB GTPase. RAB GTPases are key components of membrane trafficking mechanisms, Rab11 is implicated in a variety of biological developmental processes and responses to biotic and abiotic stresses. Nevertheless, the role of Rab11 in the defense mechanisms of cotton against Verticillium dahliae (V. dahliae) remains to be elucidated. Methods: In the present study, by analyzing the transcriptome data of Gossypium hirsutum (G. hirsutum) infected with V. dahliae, in combination with gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses, the research focused on endocytosis. Further, through bioinformatics approaches, the endocytosis-related gene Rab11 was identified. We conducted a genome-wide identification and analysis of Rab11 in G. hirsutum. In addition, by integrating transcription factor (TF) prediction, prediction of protein–protein interactions (PPI) and quantitative real-time polymerase chain reaction (qRT-PCR), the gene expression of Rab11 at different infection periods of V. dahliae (0, 24 and 72 hpi) were analyzed and validated. Results: The analysis of transcriptome data revealed that the endocytosis pathway is implicated in the stress response of cotton to V. dahliae. Additionally, three Rab11 genes were identified as being involved in this stress response. Phylogenetic analysis revealed that the 65 genes in the Rab11 family could be divided into four subgroups, each with similar gene structures and conserved motif patterns. Conclusions: The downregulation of Rab11 in G. hirsutum is closely linked to its defense against V. dahliae. TF prediction coupled with PPI offers a roadmap for dissecting the signaling pathways, functional validation, and network construction of the three GhRab11 genes. Full article

Histone methylation plays important roles in plant development and adaptation to multiple stresses. SET domain group (SDG) proteins are identified as plant histone lysine methyltransferases in Arabidopsis and other crops. However, the SDG gene family and its functional roles in tomato remain unknown. In this research, 48 tomato SDG (SlSDG) gene family members were identified, and their chromosomal locations and conserved motifs were determined. According to phylogenetic analysis, the SlSDGs are divided into seven groups, which is consistent with Arabidopsis and rice. Promoter analysis indicated that the SlSDGs may be associated with biotic and abiotic stress responses. The expression pattern of SlSDGs illustrates that heat and cold stress significantly influence the transcript abundance of SDG14/19/21/23/48. The results of a VIGS assay showed that silencing SlSDG19 and SlSDG48 decreases tomato heat tolerance, while silencing SlSDG14 improves the heat tolerance of tomato plants. The analysis of downstream regulating genes indicated that heat shock proteins (HSPs), especially HSP70 and HSP90, act as critical effectors. Similarly, the experimental assay and expression analysis suggest that SDG21 and SDG23 positively and negatively regulate tomato cold tolerance through the CBF-COR pathway, respectively. These findings clarify the function of tomato SDG proteins and provide insight for the genetic improvement of tomato for temperature stress tolerance. Full article

Periphytic algae, as representative aquatic epiphytic communities, play a vital role in the material cycling and energy flow in rivers. Through physiological processes such as photosynthetic carbon fixation and nutrient absorption, they perform essential ecological functions in water self-purification, maintenance of primary productivity, and microhabitat formation. This study investigates the interaction mechanisms between these highly flexible organisms and the hydrodynamic environment, thereby addressing the limitations of traditional hydraulic theories developed for rigid vegetation. By incorporating the coupled effects of biological flexibility and water flow, an innovative nonlinear resistance model with velocity-dependent response is developed. Building upon this model, a coupled governing equation that integrates water flow dynamics, periphytic algae morphology, and layered Reynolds stress is formulated. An analytical solution for the vertical velocity distribution is subsequently derived using analytical methods. Through Particle Image Velocimetry (PIV) measurements conducted under varying flow velocity conditions in an experimental tank, followed by comprehensive error analysis, the accuracy and applicability of the model were verified. The results demonstrate strong agreement between predicted and measured values, with the coefficient of determination R² greater than 0.94, thereby highlighting the model’s predictive capacity in capturing flow velocity distributions influenced by periphytic algae. The findings provide theoretical support for advancing the understanding of ecological hydrodynamics and establish mechanical and theoretical foundations for river water environment management and vegetation restoration. Future research will build upon the established nonlinear resistance model to investigate the dynamic coupling mechanisms between multi-species periphytic algae communities and turbulence-induced pulsations, aiming to enhance the predictive modelling of biotic–hydrodynamic feedback processes in aquatic ecosystems. Full article

Breeding performance encompasses offspring production, their survival rate, fertility, overall reproductive outcome, timing of reproduction, and breeding frequency. It varies in raptor species, being affected by different biotic, abiotic, and anthropogenic factors. The Lesser Spotted Eagle is a monogamous, long-lived, slowly reproducing raptor, characterized by site-fidelity and strongly territorial behavior. In this study, we examined data collected over a 10-year period, highlighting the eagles’ main breeding parameters, analyzing whether any of them demonstrated significant trends or spatial or temporal differences over the study period. We also searched for a strict correlation between species breeding density and breeding performance. We found out that the mean occupancy rate of the territories marginally decreased β² = −0.64 ± 0.27, p = 0.047, as this process was clearly visible in Sakar Mnt. (β² = −0.66 ± 0.27, p = 0.038), where in 2022, only 67% of the monitored territories were occupied. The overall mean productivity, breeding success, and breeding frequency did not indicate any trend over the years (p > 0.05). Of all tested breeding parameters, occupancy rate (β² = 0.29 ± 0.14, p = 0.04) and breeding success (β² = −0.12 ± 0.06, p = 0.04) varied yearly, while productivity (β² = 0.25 ± 0.12, p = 0.03) and breeding frequency (β² = 0.27 ± 0.12, p = 0.03) were influenced by density. None of the tested indicators demonstrated significant regional differences, which indicated a temporally determinate, but spatially consistent pattern of breeding performance of the species in this part of its distribution. Recently, the landscape pattern in the south-eastern part of the country was marked by spectacular habitat loss, driven by human activities and natural phenomena, with entire biodiversity facing an uncertain future. Prompt action and urgent decisions are needed to prevent the negative consequences of these imminent threats to the species. Conservation efforts should be focused on the restoration of breeding and foraging habitats. Further research on the response of eagles to the effect of natural (fires) and anthropogenic (habitat transformation) factors, as well as the relationship between breeding performance and different drivers of reproduction, such as diet, weather, habitat features, and presence of intra- and interspecific competitors, would be of crucial significance. Full article

Drones have been widely used in precision agriculture to capture high-resolution images of crops, providing farmers with advanced insights into crop health, growth patterns, nutrient deficiencies, and pest infestations. Although several machine and deep learning models have been proposed for plant stress and disease detection, their performance regarding accuracy and computational time still requires improvement, particularly under limited data. Therefore, this paper aims to address these challenges by conducting a comparative analysis of three State-of-the-Art object detection deep learning models: YOLOv8, RetinaNet, and Faster R-CNN, and their variants to identify the model with the best performance. To evaluate the models, the research uses a real-world dataset from potato farms containing images of healthy and stressed plants, with stress resulting from biotic and abiotic factors. The models are evaluated under limited conditions with original data of size 360 images and expanded conditions with augmented data of size 1560 images. The results show that YOLOv8 variants outperform the other models by achieving larger mAP@50 values and lower inference times on both the original and augmented datasets. The YOLOv8 variants achieve mAP@50 ranging from 0.798 to 0.861 and inference times ranging from 11.8 ms to 134.3 ms, while RetinaNet variants achieve mAP@50 ranging from 0.587 to 0.628 and inference times ranging from 118.7 ms to 158.8 ms, and Faster R-CNN variants achieve mAP@50 ranging from 0.587 to 0.628 and inference times ranging from 265 ms to 288 ms. These findings highlight YOLOv8’s robustness, speed, and suitability for real-time aerial crop monitoring, particularly in data-constrained environments. Full article

Dirigent proteins (DIR) are involved in lignan biosynthesis, stress responses, and disease resistance in plants. However, systematic characterization of the DIR gene family in watermelon (Citrullus lanatus) remains limited. Here, we identified 22 ClDIR genes in watermelon using bioinformatics methods, designated ClDIR1 to ClDIR22, which were unevenly distributed across eight chromosomes and classified into three subfamilies (DIR-a, DIR-b/d, DIR-e) based on phylogenetic analysis, with DIR-b/d being the largest. Synteny analysis revealed that tandem duplication primarily drove ClDIR family expansion, and collinear relationships with Arabidopsis, rice, and cucurbit species indicated evolutionary conservation. Cis-acting element analysis showed abundant stress- and hormone-responsive elements in ClDIR promoters, suggesting roles in stress regulation. Tissue-specific expression analysis demonstrated distinct patterns, with most genes highly expressed in roots. Expression profiling under 16 abiotic and biotic stresses showed 18 ClDIR genes responded to stress, with ClDIR8 differentially expressed across all conditions. qRT-PCR validation of six key genes (ClDIR5, ClDIR8, ClDIR9, ClDIR12, ClDIR16, ClDIR22) confirmed their expression patterns under high-temperature, drought, salt, and low-temperature stresses, showing a high degree of consistency with transcriptome data. Subcellular localization indicated ClDIR8 is peroxisome-localized. Yeast two-hybrid (Y2H) and bimolecular fluorescence complementation (BiFC) assays validated two ClDIR8-interacting proteins, Cla97C02G049920 (encoding peroxidase) and Cla97C08G152180 (encoding catalase). These findings provide insights into ClDIR genes in watermelon, highlighting ClDIR8 as a key stress-responsive candidate for further functional studies and breeding. Full article

Calcium-dependent protein kinases (CDPKs) are unique serine/threonine kinases that play significant roles in response to environmental stresses in plants. In this study, we comprehensively characterized the CDPK gene family in the apple cultivar ‘Hanfu’ at the genome-wide level, and 38 MdCDPKs were identified. They were unevenly distributed across 14 chromosomes. Based on phylogenetic analysis, the MdCDPKs were classified into four subfamilies. Conserved domain analysis indicated that MdCDPKs contain the catalytic kinase domain and the Ca²⁺ binding domain. During Colletotrichum gloeosporioides infection, the expression level of MdCDPK24 was significantly upregulated. Subsequently, MdCDPK24 was fused to GFP to generate the MdCDPK24-GFP construct, and confocal microscopy imaging confirmed its cytoplasmic localization in Nicotiana benthamiana leaves. Using agrobacterium-mediated transformation, we generated the overexpression of MdCDPK24 transgenic calli. MdCDPK24-overexpressing calli demonstrated significantly reduced disease severity against C. gloeosporioides infection, indicating its positive role in apple bitter rot resistance. The analysis of the CDPK gene family in the apple cultivar ‘Hanfu’ provides a new insight into the identification of CDPK genes involved in biotic stress. MdCDPK24 represents a promising candidate for genetic manipulation to enhance apple bitter rot resistance. Full article

Polyploidisation is a very common phenomenon in the plant kingdom and plays a key role in plant evolution and breeding. It promotes speciation and the extension of biodiversity. It is estimated that approximately 47% of flowering plant species are polyploids, derived from two or more diploid ancestral species. In natural populations, the predominant methods of whole-genome multiplication are somatic cell polyploidisation, meiotic cell polyploidisation, or endoreduplication. The formation and maintenance of polyploidy is accompanied by a series of epigenetic and gene expression changes, leading to alterations in the structural, physiological, and biochemical characteristics of polyploids relative to diploids. This article provides information on the mechanisms of formation of natural and synthetic polyploids. It presents a number of examples of the effects of polyploidisation on the composition and content of secondary metabolites of polyploids, providing evidence of the importance of the phenomenon in plant adaptation to the environment, improvement of wild species, and crops. It aims to gather and systematise knowledge on the effects of polyploidisation on plant physiological traits, including stomatal conductance (Gs), transpiration rate (Tr), light saturation point (LSP), as well as the most important photosynthetic parameters determining biomass accumulation. The text also presents the latest findings on the adaptation of polyploids to biotic and abiotic stresses and explains the basic mechanisms of epigenetic changes determining resistance to selected stress factors. Full article