Search Results (2,485)

Growth regulatory factors (GRFs) are sequence-specific DNA-binding transcription factors that play pivotal roles in regulating plant growth and development, and in enhancing plant tolerance to biotic and abiotic stresses. Although genome-wide structural and evolutionary studies have mapped and analyzed GRF genes in different plant species, knowledge of their characteristics and functions in sunflower (Helianthus annuus) remains limited. In this study, we used bioinformatics analyses and transgenic experiments to systematically analyze the structure and function of these genes. A total of 17 HaGRF genes were identified and classified into four distinct clades, with members of the same clade sharing conserved exon-intron structures and domain architectures. All HaGRFs were predicted to localize to the nucleus, which was experimentally verified for HaGRF2c, HaGRF3, and HaGRF8c. Transcriptome analysis demonstrated tissue-specific expression and stress-responsive profiles among the HaGRF genes. Quantitative real-time PCR revealed that several HaGRF genes were significantly induced under polyethylene glycol and NaCl stress. Additionally, ectopic expression of HaGRF2c in Arabidopsis enhanced growth and conferred greater drought tolerance, supporting its dual functions in regulating growth and in adapting to stress. In summary, this research elucidates the evolutionary relationships, conserved structural characteristics, expression patterns, and roles of the HaGRF gene family in sunflowers. These findings not only deepen our understanding of the biological functions of GRF transcription factors in sunflowers but also provide valuable candidate genes for improving yield and stress resistance in H. annuus. Full article

Epichloë is a genus of endophytic fungi that forms systemic, vertically transmitted, and asymptomatic mutualistic associations with grasses in the subfamily Pooideae. These symbioses are non-pathogenic and are of considerable importance in agronomic and livestock systems due to their roles in enhancing host fitness under biotic and abiotic stress. Several studies have reported associations between Epichloë endophytes and species of the genus Bromus, a taxonomically complex group characterized by varying ploidy levels and frequent hybridization. Among its sections, Bromopsis includes the highest number of species naturally colonized by Epichloë fungi, while sections Bromus and Ceratochloa show lower infection rates. In South America, endophytes such as E. pampeana, E. tembladerae, E. typhina, and morphotypes of Neotyphodium spp. have been documented in species including B. auleticus, B. brachyanthera, and B. setifolius, where they appear to contribute to stress resilience. Although most findings originate from Argentina, significant knowledge gaps remain regarding the diversity and distribution of these endophytes in native Bromus species across the continent. This review synthesizes the current understanding of Epichloë–Bromus interactions, emphasizing their ecological and agronomic relevance, particularly in South America. Key factors influencing the establishment of these symbioses are examined, and future research directions are proposed to advance the study of these associations. Full article

Tomato (Solanum lycopersicum) is the most important vegetable crop globally; however, its production is often hindered by soil-borne biotic and abiotic stresses. The use of rootstocks provides an effective strategy to mitigate these soil-related challenges. Hence, the development of new rootstock cultivars remains crucial to meet the demands of rapidly changing environmental conditions. Wild tomato species represent valuable genetic resources for rootstock improvement and are increasingly utilized in rootstock breeding programs. Nevertheless, the genetic mechanisms, particularly quantitative trait loci (QTL), underlying rootstock–scion interaction, remain poorly understood. In this study, 38 introgression lines (ILs) derived from S. lycopersicoides were used as rootstock and grafted with the commercial cultivar ‘Torry F₁’ to evaluate their effects on morphological and fruit quality traits under greenhouse conditions. The evaluations included assessments of morphological and fruit quality traits for QTL analysis. A total of 19 QTLs were identified, associated with 11 traits such as yield, antioxidant capacity, flavonoid content, and fruit color parameters (L*, a*, b*, C*, h°), with the phenotypic variance explained ranging from 12% to 61%. Of these QTLs, seven favorable alleles originated from S. lycopersicoides, notably including a major yield-associated locus (Fy5.1). In addition, the identification of a QTL for scion stem thickness (Tsc3.1) highlights the genetic contribution of the rootstock to scion development. This study represents the first evaluation of the rootstock potential of S. lycopersicoides ILs and provides novel insights into the genetic basis of rootstock–scion interaction in tomato. The identified QTLs offer valuable information for future breeding efforts aimed at developing improved rootstock cultivars for sustainable tomato production. Full article

Plants exposed to combined abiotic and biotic stresses often exhibit complex physiological responses that cannot be predicted from single stress factors. In this study, we evaluated the interactive effects of temperature stress and Erwinia amylovora infection on pear (Pyrus pyrifolia) leaves under five temperature conditions (10, 15, 25, 30, and 35 °C) with or without pathogen inoculation, using chlorophyll fluorescence analysis and RGB imaging over a 7-day period. Photosynthetic performance remained optimal at 25 °C under single temperature conditions, whereas pathogen inoculation alone caused PSII damage and reduced energy dissipation. Under combined stress, PSII responses exhibited temperature-dependent patterns: at 10, 15 °C, photoprotective mechanisms were partially maintained; at 25, 30 °C, severe structural and functional damage occurred; and at 35 °C, pathogen activity was suppressed while partial recovery of PSII was observed. By integrating chlorophyll fluorescence analysis with a linear mixed-effect model (LMM), distinct patterns of sensitivity were identified among fluorescence parameters, with ΦNO responding to single stress factors, and Fm, Fv, Fp, Fv/Fo, and qL showing significant three-way interactions. These findings highlight temperature-dependent strategies of pear leaves to cope with fire blight and emphasize the utility of chlorophyll fluorescence analysis for evaluating photosynthetic resilience. From an applied perspective, chlorophyll fluorescence could serve as a rapid, non-destructive tool for screening pear cultivars with enhanced tolerance to bacterial fire blight, contributing to more efficient orchard management strategies. Full article

RNA methylation, particularly N6-methyladenosine (m⁶A) and 5-methylcytosine (m⁵C), functions as a pivotal post-transcriptional regulatory mechanism and plays a central role in plant growth, development, and stress responses. This review provides a systematic summary of recent advances in RNA methylation research in cucurbit crops. To date, high-throughput technologies such as MeRIP-seq and nanopore direct RNA sequencing have enabled the preliminary construction of RNA methylation landscapes in cucurbit species, revealing their potential regulatory roles in key agronomic traits, including fruit development, responses to biotic and abiotic stresses, and disease resistance. Nevertheless, this field remains in its early stages for cucurbit crops and faces several major challenges: First, mechanistic understanding is still limited, with insufficient knowledge regarding the composition and biological functions of the core protein families involved in methylation dynamics—namely, “writers,” “erasers,” and “readers.” Second, functional validation remains inadequate, as direct evidence linking specific RNA methylation events to downstream gene regulation and phenotypic outcomes is largely lacking. Third, resources are scarce; compared to model species such as Arabidopsis thaliana and rice, cucurbit crops possess limited species-specific genetic data and genetic engineering tools (e.g., CRISPR/Cas9-based gene editing systems), which significantly hampers comprehensive functional studies. To overcome these limitations, future research should prioritize the development and application of more sensitive detection methods, integrate multi-omics datasets—including transcriptomic and methylomic profiles—to reconstruct regulatory networks, and conduct rigorous functional assays to establish causal relationships between RNA methylation modifications and phenotypic variation. The ultimate objective is to fully elucidate the biological significance of RNA methylation in cucurbit plants and harness its potential for crop improvement through genetic and biotechnological approaches. Full article

Polyploid crops such as wheat, Brassica, and cotton are critical in the global agricultural and economic system. However, their productivity is threatened increasingly by biotic stresses such as disease, and abiotic stresses such as heat, both exacerbated by climate change. Understanding the molecular basis of stress responses in these crops is crucial but remains challenging due to their complex genetic makeup—characterized by large sizes, multiple genomes, and limited annotation resources. Proteomics is a powerful approach to elucidate molecular mechanisms, enabling the identification of stress-responsive proteins; cellular localization; physiological, biochemical, and metabolic pathways; protein–protein interaction; and post-translational modifications. It also sheds light on the evolutionary consequences of genome duplication and hybridization. Breeders can improve stress tolerance and yield traits by characterizing the proteome of polyploid crops. Functional and subcellular proteomics, and identification and introgression of stress-responsive protein biomarkers, are promising for crop improvement. Nevertheless, several challenges remain, including inefficient protein extraction methods, limited organelle-specific data, insufficient protein annotations, low proteoform coverage, reproducibility, and a lack of target-specific antibodies. This review explores the genomic complexity of three key allopolyploid crops (wheat, oilseed Brassica, and cotton), summarizes recent proteomic insights into heat stress and pathogen response, and discusses current challenges and future directions for advancing proteomics in polyploid crop improvement through proteomics. Full article

This study investigates the biodeterioration of mosaic surfaces in a semi-confined archaeological environment along the Phlegraean coast (Baiae, Italy), focusing on the interaction between salt efflorescence and phototrophic biofilms. A multi-analytical approach was employed, integrating in situ observations with ex situ analyses, including SEM/EDS, FTIR spectroscopy, and metabarcoding (16S and 18S rRNA), to characterize both abiotic and biotic alteration patterns. Results highlight subtle traces of spatial differentiation: samples from the more exposed sector showed a more consistent colonization by halotolerant and halophilic taxa, particularly among Halobacteria and Rubrobacter, along with abundant sodium, chloride, and sulfate signals suggestive of active salt crystallization. Protected areas exhibit a comparable presence of salts with less diverse halophilic communities that vary along a vertical gradient of light exposure. The integration of chemical and biological data supports a model in which salt stress and biofilm development are co-dependent and synergistic in driving surface degradation. These findings emphasize the need for context-specific conservation strategies that account for the combined action of environmental salinity and microbial communities on historical materials. Full article

The cultivated potato (Solanum tuberosum L.) is a globally important crop with a narrow genetic pool, making it vulnerable to biotic and abiotic stresses. The present study analyzed the relative content of the nuclear, mitochondrial, and plastid genomes and their contributions to agronomic traits in 30 diploid interspecific potato hybrids with diverse cytoplasmic types and pedigrees. The nuclear genome size (2C-value) was estimated using flow cytometry, while the organelle DNA content and cytoplasm types were determined by quantitative polymerase chain reaction (qPCR) and multiplex PCR, respectively. The genome size of individual diploid genotypes remained stable across cultivation conditions, such as in vitro or greenhouse environments. Significant variation was observed in genome size, organelle content, and cytoplasmic types, which were associated with differences in pollen fertility and starch content. Kendall’s correlation analysis revealed a strong positive correlation between the content of plastid and mitochondrial DNA, and between starch content and chip colour after cold storage. Principal component analysis (PCA) demonstrated that variation in plastid and mitochondrial DNA content explained differences among genotypes, with nuclear DNA content contributing independently. Notably, cytoplasmic male sterility was observed in some T-type cytoplasm genotypes, thus highlighting the role of nuclear–cytoplasmic interactions. The results obtained demonstrate that organelle genome composition exerts a significant influence on agronomic traits and offer valuable insights into the potential for the enhancement of potato breeding programmes through the analysis of cytoplasm and nuclear genomes. Full article

The present research aimed to design innovative wheat cultivation systems that are less resource-intensive, promote biodiversity, and show greater resilience to both biotic and abiotic stress. It was focused on the cultivation and characterization of two evolutionary populations (EPs) of common wheat, namely EP_Floriddia and EP_Li Rosi, grown in Italy, over two growing seasons. The EPs were cultivated in organic management under legume or wheat precessions. Physico-chemical analyses included thousand kernel weight (TKW), test weight (TW), and ash content. Location and genotype mostly influenced TKW; TW, instead, was affected only by year. Wholemeal flour from each sample was assessed for protein content (PC), total starch (TS), total antioxidant capacity (TAC), and total dietary fiber (TDF). Protein content was higher on leguminous precessions than on wheat; the opposite behavior was observed for TS. The growing season predominantly impacted on TAC and TDF values. Technological and rheological parameters such as alveograph W and P/L value, SDS sedimentation test, farinograph quality, gluten index, and falling number revealed EP_Li Rosi as the best for baking aptitude, although both EPs were characterized by weak gluten. These findings support the use of EPs under legume precession as an agroecological approach to pursue agrifood biodiversity, quality, and sustainability. Full article

Unmanned aerial vehicles (UAVs) with multispectral sensors are transforming precision viticulture by enabling detailed monitoring of vineyard variability. Vegetation indices such as NDVI, NDRE, GNDVI, and SAVI are widely applied to estimate vine vigor, canopy structure, and water status. Beyond agronomic traits, UAV-derived indices can inform grape composition, including sugar content (°Brix), total phenolics, anthocyanins, titratable acidity, berry weight, and yield variables measurable in the field or laboratory to validate spectral predictions. Strengths of UAV approaches include high spatial resolution, rapid data acquisition, and flexibility across vineyard blocks, while limitations involve index saturation in dense canopies (e.g., Merlot, Cabernet Sauvignon), environmental sensitivity, and calibration requirements across varieties and phenological cycles. Integrating UAV data with ground-based measurements (leaf sampling, yield mapping, proximal or thermal sensors) improves model accuracy and stress detection. Abiotic stresses (water deficit, nutrient deficiency) can be distinguished from biotic factors (pest and fungal infections), supporting timely interventions. Compared to manned aircraft or satellite platforms, UAVs offer cost-effective, high-resolution imagery for precision vineyard management. Future directions include combining UAV indices with machine learning and data fusion to predict grape maturity and wine quality, enhancing decision-making in sustainable viticulture and precision enology. Full article

Leguminous plants are critical global crops for food security, animal feed, and ecological sustainability due to their ability to establish nitrogen-fixing symbioses with rhizobia and their high nutritional value. Autophagy, a highly conserved eukaryotic catabolic process, mediates the degradation and recycling of cytoplasmic components through the fusion of autophagosome with vacuole/lysosome and plays essential roles in plant growth, stress adaptation, and cellular homeostasis. This review systematically summarizes current knowledge of autophagy in both Arabidopsis and leguminous plants. We first outline the conserved molecular machinery of autophagy, focusing on core autophagy-related (ATG) genes in Arabidopsis and key legume species such as Glycine max, Arachis hypogaea, Pisum sativum, Cicer arietinum, and Medicago truncatula. Furthermore, the review dissects the intricate molecular regulatory networks controlling autophagy, with an emphasis on the roles of phytohormones, transcription factors, and epigenetic modifications. We then highlight the multifaceted physiological functions of autophagy in these plants. Additionally, a preliminary analysis of the ATG8 gene family in peanut indicates that its members may be involved in seed development, biological nitrogen fixation, and drought resistance. Finally, it highlights key unresolved challenges in legume autophagy research and proposes future research directions. This review aims to provide a comprehensive theoretical framework for understanding the unique regulatory mechanisms of autophagy in legumes and to provide insights for molecular breeding aimed at developing stress-resilient, high-yielding, and high-quality legume cultivars. Full article

Salinity is one of the key threats to food security and sustainability. To make saline soils productive again, we need to develop salt-tolerant crop varieties. Developing salt-tolerant wheat requires a detailed understanding of the molecular mechanisms underlying salt stress responses. In this study, we analyzed the Chinese Spring genome and identified 559 putative NAC transcription factors (TFs), which are recognized as key regulators of both abiotic and biotic stress. Protein family analysis revealed four distinct domain architectures, with more than 95% of the proteins containing a single NAC domain, consistent with their conserved regulatory role. Through in silico analyses, four salt stress-responsive TFs, NAC_1D, NAC_2D, NAC_4A, and NAC_5A, were highlighted, sharing nine of 13 DNA-binding residues. Promoter analysis of their putative target genes identified seven candidates, which, together with the NAC TFs, were subjected to RT-qPCR expression analysis in BARI Gom-25 plants exposed to 100 mM NaCl. The expression data revealed contrasting regulatory patterns between NAC TFs and their target genes. For example, Hsp70 was strongly upregulated in both shoots and roots, despite opposite patterns of NAC_1D expression between tissues. Similarly, bZIP expression mirrored the downregulation of NAC_2D, whereas HKT8 expression remained stable under salt stress. NAC_4A showed a root-specific pattern suggestive of positive regulation of a Non-specific serine/threonine protein kinase, while NAC_5A upregulation corresponded with downregulation of Plant cadmium resistance 2. Collectively, these results provide functional insights into four NAC TFs and identify potential molecular targets for improving wheat salt tolerance. By targeting key tolerance genes at the DNA level offers greater precision and can significantly reduce breeding time. Full article

Cladophora glomerata is a species of green algae from the Cladophoraceae family belonging to the class Ulvophyceae. This filamentous macroalga is generally associated with freshwater habitats, especially in nutrient-rich ecosystems. It produces high biomass and occupies large areas of freshwater. The robust filaments of Cladophora glomerata form dense mats that are easy to harvest. It is also rich in proteins, macro- and micronutrients, and other bioactive compounds. Therefore, its biomass could be used in various fields of sustainable agriculture, for example, promoting plant growth and yield, purifying soil, improving crop properties against biotic and abiotic stress, or it could be used in husbandry as a feed supplement. It is also becoming increasingly attractive for use in sustainable farming. This review provides an update with the latest information on the use of freshwater Cladophora glomerata in sustainable farming and suggests the most promising fields of research. Full article

Northern corn leaf blight is a major fungal disease hindering maize production worldwide. Among the various strategies of disease management, the deployment of host plant resistance is the most economic means to mitigate the yield losses, as it is cost-effective and durable. In this study, we performed the genome-wide association study (GWAS) analysis in a set of 336 maize inbred lines. The experimental material was evaluated for northern corn leaf blight disease response across two seasons during the rainy seasons of 2023 and 2024. The ANOVA results and estimates of genetic variability parameters indicated the existence of a substantial amount of genetic variability. High heritability and high genetic advance as percent mean suggested the presence of additive genetic effects in controlling the disease response. GWAS analysis was performed employing GLM, MLM, CMLM, MLMM, FarmCPU and BLINK. The results from GWAS identified 74 marker associations from GLM and FarmCPU models. The QTN S1_7356398, located on chromosome 1, identified from the GLM model, explained 12.12 percent of phenotypic variation. Another QTN S2_51098833 located on chromosome 2, identified from the FarmCPU model, explained 6.14 percent variation. Remaining associations explained lesser PVE, suggesting the quantitative inheritance of NCLB resistance. Candidate gene identification was performed by keeping B73 as a reference genome. The identified QTNs from the current study were found to be located in annotated genes with functional domains implicated in defence mechanisms in maize and other crops. Many candidate genes, including chitinase, putative serine/threonine protein kinase, and aldehyde oxygenase, were identified and found to play a crucial role in plant defence mechanisms against several biotic and abiotic stresses. Full article

In an era of global warming, sustainable agriculture, which emphasises the conservation of biodiversity and the rational use of natural resources, is growing in importance. One of the key elements is to increase the genetic diversity of crops through the use of crop wild relatives (CWRs) and local varieties, which provide a source of genes for resistance to biotic and abiotic stresses. Modern agricultural systems are characterised by low biodiversity, which increases the susceptibility of plants to diseases and pests. Growing mixtures of varieties, both intra- and interspecific, is a practical strategy to increase plant resistance, stabilise yields and reduce pathogen pressure. This manuscript has a review character and synthesises the current literature on the use of CWRs, local varieties, and variety mixtures in sustainable agriculture. The main research question of the study is to what extent plant genetic resources, including CWRs and local varieties, as well as the cultivation of variety mixtures, can promote plant resistance, stabilise yields and contribute to sustainable agriculture under climate change. The objectives of the study are to assess the role of genetic resources and variety mixtures in maintaining biodiversity and yield stability, and to analyse the potential of CWRs and local varieties in enhancing plant resistance. Additionally, the study investigates the impact of variety mixtures in reducing disease and pest development, and identifies barriers to the use of genetic resources in breeding along with strategies to overcome them. The study takes an interdisciplinary approach including literature and gene bank data analysis (in situ and ex situ), field trials of cultivar mixtures under different environmental conditions, genetic and molecular analysis of CWRs, the use of modern genome editing techniques (CRISPR/Cas9) and assessment of ecological mechanisms of mixed crops such as barrier effect, and induced resistance and complementarity. In addition, the study considers collaboration with participatory and evolutionary breeding programmes (EPBs/PPBs) to adapt local varieties to specific environmental conditions. The results of the study indicate that the integration of plant genetic resources with the practice of cultivating variety mixtures creates a synergistic model that enhances plant resilience and stabilises yields. This approach also promotes agroecosystem conservation, contributing to sustainable agriculture under climate change. Full article