Search Results (1,080)

Efficient microbial assimilation of high-concentration ammonium nitrogen and its conversion into value-added bioproducts represent a pivotal yet underexplored strategy for sustainable nitrogen management. Here, we report a newly isolated Bacillus velezensis strain, GY1, with a robust intrinsic capacity for simultaneous NH₄⁺-N assimilation and γ-polyglutamic acid (γ-PGA) biosynthesis. Under optimized conditions (37 °C, pH 7.0, C/N = 12:1), GY1 achieved 76.5% removal of ammonium nitrogen (400 mg/L) with negligible nitrite accumulation (<0.02 mg/L), indicating assimilation rather than nitrification. Transcriptomic analysis revealed a coordinated metabolic flux wherein the glutamine synthetase - glutamate synthase pathway GS-GOGAT pathway supplies glutamate for γ-PGA synthesis, while polymerization further facilitates ammonium sequestration via electrostatic interactions. GY1 produced up to 612.8 mg/L γ-PGA, and genetic overexpression of capB synchronized these pathways, enhancing both ammonium assimilation (87.4%) and γ-PGA yield (843.9 mg/L). Notably, this metabolic coupling remained resilient in complex substrates, achieving 68.8% ammonium removal and 220.7 mg/L γ-PGA production in untreated biogas slurry. Together, these findings establish GY1 as a metabolically robust platform linking nitrogen assimilation with biopolymer synthesis, offering a mechanistic framework for circular nitrogen economies. Full article

Low-concentration methane emissions from landfills, manure management, wastewater treatment, and ventilation streams are difficult to mitigate using conventional capture and oxidation because of high air-to-fuel ratios, variable flows, and unfavorable economics. Methanotrophic bioreactors provide an aerobic biological route to oxidize methane at ambient conditions and, in selected cases, enable valorization into biomass and bioproducts. This review synthesizes methanotrophic reactor technologies for dilute methane, emphasizing the design and operational constraints that control performance. We classify systems into (i) fixed-film gas–solid configurations (biofilters, biocovers, biotrickling filters, and bioscrubbers), (ii) suspended-growth gas–liquid reactors (stirred tanks, bubble columns, and loop/airlift designs), (iii) membrane-based and intensified contactors that decouple methane and oxygen delivery and enhance mass transfer, and (iv) hybrid and in situ approaches for diffuse sources. This review presents key metrics and discusses how mass transfer, moisture and temperature control, nutrient supply, and microbial ecology interact to define achievable removal. We further summarize recent techno-economic and life-cycle studies to identify dominant cost drivers, particularly air handling and gas–liquid transfer, and the concentration regimes where biological oxidation is competitive with catalytic or thermal alternatives. Full article

Phosphatidylserine (PS), a valuable phospholipid, is widely used in food, pharmaceutical and cosmetic industries. Its enzymatic synthesis, catalyzed by phospholipase D (PLD) via transphosphatidylation under mild conditions, has drawn considerable attention. However, the industrial use of free PLD is limited by poor stability, difficult recovery, and high cost. To address these challenges, a ternary composite carrier—integrating the flexibility of chitosan, the stability of cellulose, and the macroporosity of agarose—was constructed for immobilizing the PLD from Streptomyces antibioticus (saPLD). The resulting saPLD@chitosan–cellulose–agarose biocatalyst demonstrated enhanced immobilization efficiency, catalytic performance, and stability across varying pH and temperatures. After eight consecutive batches of usage, the PS yield of saPLD@chitosan–cellulose–agarose reached over 60% of that from the first batch. Thus, this study established a new method for preparing immobilized saPLD, and developed a robust and promising platform for the efficient and sustainable production of PS. Full article

The management of invasive alien species (IAS) generates large amounts of plant waste biomass that is commonly disposed of by burning or destruction, leading to environmental and economic drawbacks. At the same time, the production of synthetic dyes and pigments used in printing and graphic applications remains a significant source of pollution. In this context, the valorization of IAS biomass as a source of natural colorants represents a sustainable alternative aligned with circular economy principles. Here, biocompounds and natural dyes were extracted from four invasive or non-native plant species—Arundo donax, Phytolacca americana, Tradescantia fluminensis, and Eucalyptus globulus—using five solid–liquid extraction methods: infusion, infusion with heat, thermal agitation, Soxhlet extraction, and ultrasonic-assisted extraction. Extraction efficiency and color preservation were comparatively evaluated. Although Soxhlet extraction provided the highest extraction yield (up to 30.5%), infusion with heat proved to be the most suitable method for preserving color integrity and minimizing oxidation. Liquid dyes obtained by the selected extraction method were converted into solid pigments through a lake pigment precipitation process using aluminum potassium sulfate and sodium bicarbonate. The resulting pigments were characterized in terms of chemical composition, particle size, and chromatic properties, and subsequently formulated into oil-based inks using linseed oil as binder. Scanning electron microscopy revealed pigment particle sizes ranging from approximately 2.1 to 8.3 µm, depending on the plant source, and confirmed adequate ink penetration and distribution on commercial printmaking paper. The obtained pigments exhibited color tones ranging from yellow to brown and grey, mainly associated with the phenolic and tannin content of the original biomass. Printing tests demonstrated the suitability of the developed inks for manual printmaking techniques, highlighting the potential of IAS-derived pigments as sustainable alternatives for artistic and printing applications. Full article

In this work, we present the scale-up of a batch anaerobic fermentation system for the production of succinic acid from glycerol using A. succinogenes. The system has been successfully scaled up from an initial bioreactor working volume of 1 L (laboratory scale) to a working volume of 100 L (pilot scale). At the same time, we have developed a hybrid model, combining the intrinsic kinetics of the microbial growth, with a computational fluid dynamics model (CFD) of the bioreactor. The proposed model is able to predict the productivity drop, usually observed while scaling up a bioprocess. In our process, this is a result of the limitations on the mass transfer of CO₂ between the gas and the liquid phase of the system. The model is successfully used to predict the amount of aeration needed in order to achieve increased succinic acid productivity. Using the model, the final succinic acid increased by 4.3%, and the succinic acid productivity increased by 8.5%, while the fermentation by-products decreased by approxiamtely 3% each. Full article

The tomato processing industry is among the most widespread food industries worldwide, generating residues that pose an important issue due to their abundance and the rising negative environmental impacts associated with waste. This paper summarizes potential products that can be obtained from these sources, with a focus on the production of a specific biopolymer, cutin, which has great potential as a food packaging material. It emphasizes the development of an integration proposal model for the biorefinery process of tomato pomace, in line with the zero-waste concept, by performing comparative techno-economic analysis (TEA) of two processing scenarios: (1) a biorefinery pathway that valorizes tomato pomace utilization by producing cutin and (2) an integrated process designed for the simultaneous production of cutin and phenolic antioxidants. The study identifies current research gaps and outlines strategic directions for potential integration pathways that can enhance not only the economic viability and profitability of the process but also its environmental benefits through more complete. The techno-economic analysis model for cutin extraction showed an internal rate of return (IRR) of only 2%, which is five times lower than the IRR achieved in our integrated model for cutin and phenolic compounds. Additionally, the payback time in the integrated approach improved significantly from 9.56 to 5.7 years. This paper assesses the potential of tomato pomace as a sustainable source for the production of high-value bioproducts that can economically justify investments in sustainable bioprocessing technologies and reduce waste through an integrated approach. Full article

Growing global energy demand and concerns over climate change and fossil fuel depletion have increased interest in sustainable bioproducts such as ethanol. Unlike first-generation (1G) ethanol derived from food crops (e.g., corn), second-generation (2G) ethanol is produced from lignocellulosic biomass, an abundant non-food resource that addresses key sustainability concerns. Consolidated bioprocessing (CBP) integrates enzyme production, hydrolysis, and fermentation into a single step, using either microbial consortia or engineered microorganisms, thereby simplifying the process and potentially reducing costs compared with separate hydrolysis and fermentation (SHF) and simultaneous saccharification and fermentation (SSF). However, CBP systems are complex due to dynamic interactions among microbial communities, metabolic pathways, and process conditions. Addressing this complexity requires modeling approaches that capture nonlinear relationships and support robust process optimization. Machine learning (ML)-based models offer data-driven tools to represent complex bioprocess dynamics, improve predictive accuracy, and optimize bioproduct formation, thereby supporting progress toward commercial viability. Although CBP can be applied to a range of bioproducts, this review primarily focuses on lignocellulosic ethanol and closely related biofuels. The review provides a comprehensive overview of key CBP processes, the current state of CBP modeling, major limitations, and the emerging role of ML in addressing modeling challenges. It summarizes recent modeling techniques for CBP, including polynomial models and response surface methodologies, and discusses regression and neural network approaches in detail. Both first-principles and data-driven modeling strategies are considered, highlighting advances that can improve the scalability and efficiency of CBP for bioproduction. Overall, this review offers perspectives on modeling-enabled pathways for utilizing low-cost lignocellulosic biomass in sustainable bioprocessing. Full article

Numerous insect species exhibiting positive phototaxis are strongly attracted to ultraviolet (UV) light. However, several heteropteran stink bugs, including Nezara viridula (L.) and its congener Nezara antennata Scott, show stronger attraction to traps combining UV and green light than to monochromatic UV light traps. To examine the role of visible light wavelengths in enhancing UV attraction, we evaluated the attractiveness of blue (469 nm), green (523 nm), orange (613 nm), and red (632 nm) light in combination with UV light (396–400 nm), as well as a monochromatic UV light source, under field conditions targeting Nezara bugs. Traps combining UV and blue light captured nearly three times more Nezara bugs than UV-only light traps. Conversely, traps combining orange or red and UV light captured equal to or fewer bugs than monochromatic UV light traps, indicating no enhancement in attraction with these color combinations. Furthermore, monochromatic blue light alone showed very weak attractiveness, indicating that blue light synergistically enhanced the attractiveness of UV light to bugs. Strong attractiveness to traps combining UV and green light was confirmed in the lepidopteran moth Pleuroptya ruralis (Scopoli), suggesting that multiwavelength light sources may be effective in attracting insect species beyond Heteroptera. These findings highlight the value of multiwavelength light traps, particularly traps combining UV and blue light, for improving stink bug monitoring and pest management. Full article

Background: The constant growth in demand for sustainable energy products and the development of the circular economy have created a critical need for an efficient supply chain for biomass. However, the inherent challenges of biomass make its harvesting, collection, storage, and transport difficult, impacting logistical efficiency and the viability of bioenergy and bioproduct production. This study analyzes how combining artificial intelligence (AI) with multimodal transport can optimize and improve efficiency, as well as reduce costs, in biomass logistics. Methods: The study uses a tiered research framework that encompasses the physical domain (biomass limitations), the structural domain (mathematical modeling for multimodal transport), the intelligence domain (AI-based decision making), and the strategic approach. Results: The outcomes indicate that while truck transport is ideal for short distances, integrating rail and water transport through AI-driven optimization reduces costs and greenhouse gas emissions for long-distance travel. AI technologies, such as digital twins and machine learning, improve demand forecasting, real-time routing, and cargo consolidation, leading to enhanced prediction accuracy for transport costs. Conclusions: The integration of AI and multimodal networks builds resilient and sustainable biomass supply chains. However, full implementation requires addressing data fragmentation and investing in digital infrastructure to enable seamless coordination between supply chain stakeholders. Full article

Background: Medicinal plants function as complex holobionts, with their therapeutic potential significantly shaped by the associated microbiome, particularly endophytic fungi. These symbionts engage in a sophisticated “chemical signaling” with their hosts, acting as biotic elicitors that modulate plant secondary metabolism while simultaneously responding to host cues to activate their own cryptic biosynthetic gene clusters (BGCs). This review aims to critically summarize the multi-layered mechanisms driving this metabolic crosstalk and evaluate strategies to harness this symbiotic intelligence for natural product discovery. Methods: A systematic literature survey spanning the last decade was conducted across major databases. The search specifically targeted studies investigating endophytic fungi in medicinal plants, focusing on experimental designs for BGC activation, applications of spatial metabolomics (matrix-assisted laser desorption/ionization mass spectrometry imaging, MALDI-MSI), and the structural elucidation of novel bioactive natural products through co-culture or in planta models. Results: Our analysis reveals that host-derived chemical cues, such as specific root exudates and oxylipins, act as primary triggers to awaken silent fungal BGCs. We collated numerous recently discovered bioactive metabolites—including novel polyketides, highly rearranged terpenoids, and unique alkaloids—demonstrating their potent antimicrobial and cytotoxic properties. Furthermore, a critical evaluation of spatial metabolomics studies demonstrates that metabolic exchange is highly localized at the plant–fungus interface, providing contextual insights that traditional bulk tissue extraction fails to capture. Conclusions: This review bridges the gap between ecological understanding and synthetic biology applications. We conclude that translating the mechanisms of this “chemical signaling” into biotechnological strategies offers a sustainable pathway for the bioproduction of high-value pharmaceuticals, thereby reducing reliance on the wild harvesting of medicinal plants. Full article

Breast cancer continues to be a major challenge in global health, in part due to significant inequalities in access to costly diagnostic and therapeutic technologies based on antibodies. Their manufacturing requires complex and expensive bioproduction systems, resulting in limited availability of these tools—essential for early detection and targeted treatment—in many regions, particularly in Latin America. This gap has highlighted the need for cost-effective and scalable theranostic alternatives, increasing interest in aptamers. Obtained through SELEX technology, aptamers are synthetic DNA or RNA oligomers that fold into functional structures. Among their advantages are high affinity for their target, low immunogenicity, and chemical synthesis, which assures reproducible production. Aptamers have expanded the landscape of diagnostic platforms through the development of sensitive aptasensors, liquid biopsy strategies, and imaging systems based on nanomedicines. They also contribute to targeted therapy by recognizing cancer biomarkers selectively and enabling controlled drug delivery. This review presents a critical summary of advances in aptamer-based theranostics for breast cancer, addressing molecular mechanisms, structural folding, selective ligand binding, and nanomaterial interfacing. We also discuss applications in extracellular vesicle capture, cancer stem cell detection, and therapeutic conjugates, emphasizing their advantages and limitations relative to approaches based on antibodies. Overall, current advances show aptamers as emerging tools capable of democratizing precision oncology, particularly in regions where access to advanced technologies remains limited. Full article

Lignocellulose biomass (LB) has gained interest as a second-generation renewable feedstock for producing bio-based products within a circular economy framework. Hemp hurds, a byproduct of industrial hemp processing, are one of the LB feedstocks that have gained attraction. This study examines the physicochemical properties of hemp hurds to evaluate their suitability as substrates for bioproduct synthesis. The chemical analysis of hemp hurds showed that the polysaccharide content is 53.4%, lignin is 20.8%, extractives are 15%, and ash is 4.35%. The moisture content is 6.34%, and the density is 1.0016 g/mL, indicating low porosity and a small surface area, which limits enzyme access to cellulose. Structural analysis using X-ray diffraction (XRD) indicated a crystallinity index of 40.20%, and the Fourier Transform Infrared Spectrophotometer (FTIR) confirmed the characteristic peaks representing cellulose, hemicellulose, and lignin at 3332 cm⁻¹, 1734 cm⁻¹, and 1510 cm⁻¹, respectively. The Scanning Electron Microscope (SEM) revealed a tightly packed surface with smooth, low porosity, whereas the Thermogravimetric Analyser (TGA) indicated decomposition in phases for hemicellulose, cellulose, and lignin. The structural and chemical findings of hemp hurds characterisation suggest that they are a suitable raw material for producing various bio-based materials. Full article

The valorization of agro-industrial residues through fermentation processes represents a sustainable approach to producing high-value bioproducts, such as microbial organic acids and fermentation-derived anti-browning agents, including kojic acid and kojic acid-rich fermented extracts. In this study, melon waste (non-commercial-quality or damaged fruit) was evaluated as an alternative carbon source (whole fruit) for kojic acid (KA) production by Aspergillus oryzae (ATCC 10124) under submerged fermentation. The effects of process variables such as pH, temperature, and nitrogen and carbon availability on KA synthesis were analyzed, and biomass growth and product formation were described using logistic and Luedeking–Piret kinetic models. Under optimal conditions (pH 5.5, 36 °C, 2.5 g/L melon dry matter, 2.5 g/L yeast extract, 100 rpm), KA production reached 1.64 g/L at a final time of 120 h. Kinetic analysis showed moderate fungal growth (μ_max = 0.058 h⁻¹; X_max = 0.81 g/L), with KA formation following a mixed growth-associated pattern as described by the Luedeking–Piret model (α = 1.26 g KA/g X; β = 0.024 h⁻¹), indicating sustained production during the stationary phase. The KA-rich fermented extract was subsequently applied as an anti-browning treatment on spineless prickly pear (Opuntia ficus-indica) cladodes. Short immersion times (0.5–1.0 min) in a 2 g/L KA solution significantly preserved luminosity (L*) and limited total color change (ΔE ≤ 5) during 4 days of storage at 28 °C, compared with water-treated controls, which exhibited accelerated darkening (ΔE ≈ 9–15). Prolonged immersion times induced tissue damage and color deterioration, indicating an optimal exposure window. These results demonstrate the feasibility of valorizing melon waste to obtain a KA-rich extract and support its potential application as a natural anti-browning agent in fresh-cut vegetables within a circular agrifood framework. Full article

Phaeodactylum tricornutum is one of the most well-characterized microalgae and serves as a pivotal model diatom in global carbon fixation and the mediation of biogeochemical cycling of essential nutrients. Over the past few decades, the availability of a complete genome assembly, coupled with the development of robust DNA manipulation tools and efficient DNA delivery methodologies, has established P. tricornutum as a promising photosynthetic chassis for the sustainable bioproduction of high-value compounds, including fucoxanthin and eicosapentaenoic acid (EPA). This review systematically summarizes the research progress in the strain improvement toolkit of P. tricornutum, encompassing both genetic and non-genetic engineering strategies. It elaborates on the types and applications of its representative bioactive products, as well as the molecular mechanisms underlying key synthetic pathways. Additionally, this work synthesizes the research findings on the optimization of critical cultivation conditions (e.g., light, temperature, and nutrient composition) that modulate the growth and product synthesis of P. tricornutum. On this basis, the challenges encountered by P. tricornutum in industrial applications are proposed for further discussion, aiming to provide a reference for in-depth exploration of related research directions and facilitate the expansion of its application scope in the field of biomanufacturing. Full article

Helianthus tuberosus L. tubers are the primary part utilized by humans for bioenergy and bioproduct production. Therefore, achieving high tuber yield is a core issue in Jerusalem artichoke cultivation and management. In this study, red-skinned Jerusalem artichoke was used as an experimental material. Under field conditions from 2022 to 2023, different root-cutting treatments were established to investigate their effects on Jerusalem artichoke biomass, photosynthetic characteristics, and rhizosphere (non-rhizosphere) soil nutrient content, aiming to provide a theoretical basis for high-yield cultivation of Jerusalem artichoke. During the vegetative growth stage (70–75 days after planting), a “vertical cutting method” was applied; centered on the plant, vertical cuts were made through the horizontal root system at radii of 20 cm, 30 cm, 40 cm, and 50 cm to implement root-cutting treatments. The total biomass, underground biomass, tuber yield and root/shoot ratio of Jerusalem artichoke increased by 11.59–25.97%, 15.77–46.33%, 7.69–49.09% and 11.72–62.69%, respectively. The tuber yield was greatest under D1 (20 cm) (0.94 kg·plant⁻¹ and 0.98 kg·plant⁻¹). On the 7th and 15th days after root breakage, the photosynthetic characteristics and transpiration rate of the Jerusalem artichoke gradually increased with increasing root-cutting radius and were lower than those of the control. On the 21st day after the root-cutting treatment, the photosynthetic characteristics and transpiration rate of the Jerusalem artichoke plants gradually decreased with increasing root-cutting radius and were greater than those of the control plants. The water use efficiency of Jerusalem artichoke increased with increasing root-cutting radius. The contents of C, N, P, available phosphorus, alkali-hydrolyzed nitrogen, nitrate nitrogen showed that proper root-cutting can increase tuber yield of Jerusalem artichoke and improve rhizosphere soil nutrients. Full article