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Search Results (240)

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Keywords = biomineralization processes

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41 pages, 4627 KB  
Review
Research Progress in Chitin/Chitosan-Based Biomass Adhesives: Extraction Processes, Composite and Chemical Modification
by Yizhang Luo, Ziying Zhang, Jiachen Zuo and Libo Zhang
Polymers 2026, 18(3), 337; https://doi.org/10.3390/polym18030337 - 27 Jan 2026
Viewed by 102
Abstract
Traditional fossil-based adhesives, hindered by issues such as formaldehyde emission, dependence on fossil resources, and poor biodegradability, struggle to meet the global demand for low-carbon green development. Biomass-based adhesives have thus emerged as a core alternative. Among them, chitin/chitosan derived from biomass waste [...] Read more.
Traditional fossil-based adhesives, hindered by issues such as formaldehyde emission, dependence on fossil resources, and poor biodegradability, struggle to meet the global demand for low-carbon green development. Biomass-based adhesives have thus emerged as a core alternative. Among them, chitin/chitosan derived from biomass waste such as shrimp and crab shells demonstrates significant potential in the adhesive field due to its renewability, controllable structure, biocompatibility, and inherent antibacterial properties. However, mainstream biomass adhesives like soy protein and starch adhesives suffer from poor water resistance and insufficient wet adhesion strength. Pure chitin/chitosan-based adhesive systems also exhibit low wet strength retention. Furthermore, the overall development faces challenges including high extraction costs, insufficient performance synergy, poor industrial compatibility, and a lack of standardized systems. This review follows the framework of “resource–extraction–modification–performance–application–challenges” to systematically summarize relevant research progress. It clarifies the molecular structure and intrinsic advantages of chitin/chitosan, outlines extraction processes such as acid/alkali and enzymatic methods, and characterization techniques including FT-IR and XRD. The review focuses on analyzing modification strategies such as composite modification, chemical modification, biomineralization, and biomimetic design, and verifies the application potential of these adhesives in wood processing, biomedicine, paper-based packaging, and other fields. Research indicates that chitin/chitosan-based adhesives provide an effective pathway for the green transformation of the adhesive industry. Future efforts should concentrate on developing green extraction processes, designing multifunctional integrated systems, and achieving full resource utilization of biomass. Additionally, establishing comprehensive standardized systems and promoting the translation of laboratory research into industrial applications are crucial to driving the industry’s green transition. Full article
(This article belongs to the Section Biobased and Biodegradable Polymers)
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22 pages, 1861 KB  
Article
Differential Expression of S100A Genes in hDPSCs Following Stimulation with Two Hydraulic Calcium Silicate Cements: A Laboratory Investigation
by Holger Jungbluth, Diana Lalaouni, Jochen Winter, Søren Jepsen and Dominik Kraus
J. Funct. Biomater. 2026, 17(1), 55; https://doi.org/10.3390/jfb17010055 - 21 Jan 2026
Viewed by 183
Abstract
Hydraulic calcium silicate cements (HCSCs) are contemporary materials in vital pulp therapy (VPT) and regenerative endodontic therapy (RET) due to their favorable effects on pulpal and periodontal cells, including cell differentiation and hard tissue formation. Recent studies also indicated the involvement of several [...] Read more.
Hydraulic calcium silicate cements (HCSCs) are contemporary materials in vital pulp therapy (VPT) and regenerative endodontic therapy (RET) due to their favorable effects on pulpal and periodontal cells, including cell differentiation and hard tissue formation. Recent studies also indicated the involvement of several S100A proteins in inflammatory, differentiation, and mineralization processes of the pulp. The aim of the present study was to investigate the effects of HCSCs on S100A gene expression in human dental pulp stem cells (hDPSCs). Human DPSCs were isolated and characterized by multi-lineage stem-cell markers and differentiation protocols. In stimulation experiments hDPSCs were exposed to ProRoot®MTA, Biodentine®, IL-1β, and dexamethasone. Cell viability was determined by XTT assay. IL-6 and IL-8 mRNA expression was measured to analyze proinflammatory response. In addition, odontogenic differentiation and biomineralization assays were conducted (DSPP- and ALP-mRNA expression, ALP activity, and Alizarin Red staining). Differential expression of 13 S100A genes was examined using qPCR. Low concentrations of HCSCs enhanced the proliferation of hDPSCs, whereas higher concentrations exhibited cytotoxic effects. HCSCs induced a pro-inflammatory response and led to odontogenic differentiation and biomineralization. This was accompanied by significant alterations in the expression levels of various S100A genes. ProRoot®MTA and Biodentine® significantly affect the expression of several S100A genes in hDPSCs, supporting their role in inflammation, differentiation, and mineralization. These findings indicate a link between the effects of HCSCs on human pulp cells during VPT or RET and S100A proteins. Full article
(This article belongs to the Section Dental Biomaterials)
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36 pages, 3844 KB  
Review
Bioinspired Improvement of Lignocellulosic Bio-Based Materials Against Fire and Fungi—A Comprehensive Review
by Jovale Vincent Tongco and Armando G. McDonald
Bioresour. Bioprod. 2026, 2(1), 3; https://doi.org/10.3390/bioresourbioprod2010003 - 16 Jan 2026
Viewed by 334
Abstract
Lignocellulosic bio-based materials, such as wood, biocomposites, and natural fibers, exhibit desirable structural properties. This comprehensive review emphasizes the foundational and latest advancements in bioinspired improvement strategies, such as direct mineralization, biomineralization, lignocellulosic nanomaterials, protein-based treatments, and metal-chelating processes. Significant focus was placed [...] Read more.
Lignocellulosic bio-based materials, such as wood, biocomposites, and natural fibers, exhibit desirable structural properties. This comprehensive review emphasizes the foundational and latest advancements in bioinspired improvement strategies, such as direct mineralization, biomineralization, lignocellulosic nanomaterials, protein-based treatments, and metal-chelating processes. Significant focus was placed on biomimetics, emulating natural protective mechanisms, with discussions on relevant topics including hierarchical mineral deposition, free-radical formation and quenching, and selective metal ion binding, and relating them to lignocellulosic bio-based material property improvements, particularly against fire and fungi. This review evaluates the effectiveness of different bioinspired processes: mineralized and biomineralized composites improve thermal stability, nanocellulose and lignin nanoparticles provide physical, thermal, and chemical barriers, proteins offer biochemical inhibition and mineral templating, and chelators interfere with fungal oxidative pathways while simultaneously improving fire retardancy through selective binding with metal ions. Synergistic approaches integrating various mechanisms could potentially lead to long-lasting and multifunctional protection. This review also highlights the research gaps, challenges, and potential for future applications. Full article
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17 pages, 1005 KB  
Article
Microbial Community Profiling of Concrete
by Caroline Danner, Julien Charest, Carlijn Borghuis, Philipp Aschenbrenner, Jakob Lederer, Robert L. Mach and Astrid R. Mach-Aigner
Microorganisms 2026, 14(1), 131; https://doi.org/10.3390/microorganisms14010131 - 7 Jan 2026
Viewed by 233
Abstract
Concrete is the most widely used construction material worldwide, yet its production and disposal pose significant environmental challenges due to high carbon emissions and limited recyclability. While microbial colonization of concrete is often associated with structural deterioration, recent research has highlighted the potential [...] Read more.
Concrete is the most widely used construction material worldwide, yet its production and disposal pose significant environmental challenges due to high carbon emissions and limited recyclability. While microbial colonization of concrete is often associated with structural deterioration, recent research has highlighted the potential of microorganisms to contribute positively to concrete recycling and self-healing. In this study, we investigated the bacterial and fungal communities inhabiting urban concrete samples using amplicon-based taxonomic profiling targeting the 16S rRNA gene and internal transcribed spacer (ITS) region. Our analyses revealed a diverse assemblage of microbial taxa capable of surviving the extreme physicochemical conditions of concrete. Several taxa were associated with known metabolic functions relevant to concrete degradation, such as acid and sulphate production, as well as biomineralization processes that may support crack repair and surface sealing. These findings suggest that concrete-associated microbiomes may serve as a reservoir of biological functions with potential applications in sustainable construction, including targeted biodegradation for recycling and biogenic mineral formation for structural healing. This work provides a foundation for developing microbial solutions to reduce the environmental footprint of concrete infrastructure. Full article
(This article belongs to the Section Environmental Microbiology)
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37 pages, 4829 KB  
Review
C-Type Lectins from Marine Bivalves: Functional Diversity and Structural Insights
by Ivan Buriak, Daria Lanskikh, Ivan Baklanov, Daniil Kozyrev and Andrei Grinchenko
Mar. Drugs 2026, 24(1), 17; https://doi.org/10.3390/md24010017 - 26 Dec 2025
Viewed by 580
Abstract
C-type lectins (CTLs) are a large family of calcium-dependent carbohydrate-binding proteins that play crucial roles in innate immunity as pattern recognition receptors. Bivalve mollusks possess exceptionally diverse and expanded repertoires of CTLs, yet a systematic review integrating their structural, functional, and regulatory aspects [...] Read more.
C-type lectins (CTLs) are a large family of calcium-dependent carbohydrate-binding proteins that play crucial roles in innate immunity as pattern recognition receptors. Bivalve mollusks possess exceptionally diverse and expanded repertoires of CTLs, yet a systematic review integrating their structural, functional, and regulatory aspects has been lacking. This article provides a comprehensive synthesis of current knowledge on bivalve CTLs, analyzing their biosynthesis, complex tissue-specific expression under both normal and stressed conditions, and their multifaceted roles in immune defense and other physiological processes. Our analysis consolidates data on their diverse domain architectures, phylogenetic relationships, and the variability of key motifs within their carbohydrate-recognition domains. The results demonstrate that bivalve CTLs are not only critical for pathogen recognition, agglutination, and phagocytosis but also involved in processes like nutrition, development, byssus formation and biomineralization. However, a significant finding is that the detailed carbohydrate specificity for most bivalve CTLs remains poorly characterized, often limited to monosaccharide inhibition assays. In conclusion, while the immune role of bivalve CTLs is well-established, this review underscores a critical gap in understanding their fine glycan-binding profiles. Therefore, a shift in the focus of future research towards elucidating their structure and carbohydrate specificity is required for a full understanding of their biological functions and an assessment of their biomedical potential. Full article
(This article belongs to the Special Issue Marine Glycobiology)
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42 pages, 3761 KB  
Review
A Comprehensive Review of Carbon Capture, Storage, and Reduction Strategies Within the Built Environment
by Eyad Abdelsalam Elsayed Hamed, Shoukat Alim Khan, Arslan Yousaf and Muammer Koç
Materials 2025, 18(24), 5646; https://doi.org/10.3390/ma18245646 - 16 Dec 2025
Viewed by 981
Abstract
The built environment (BE) encompasses an enormous volume and substantial material mass. However, structures within it typically serve single, limited functions. Enhancing these structures with multifunctional capabilities holds significant potential for achieving broader sustainability goals and creating impactful environmental benefits. Among these potential [...] Read more.
The built environment (BE) encompasses an enormous volume and substantial material mass. However, structures within it typically serve single, limited functions. Enhancing these structures with multifunctional capabilities holds significant potential for achieving broader sustainability goals and creating impactful environmental benefits. Among these potential multifunctional applications, carbon capture, reduction, and storage are especially critical, given the current built environment’s substantial contribution of approximately 40% of global energy and CO2 emissions. Keeping this potential in view, this comprehensive review critically evaluates carbon management strategies for the built environment via three interrelated approaches: carbon capture (via photosynthesis, passive concrete carbonation, and microbial biomineralization), carbon storage (employing carbonation curing, mineral carbonation, and valorization of construction and demolition waste), and carbon reduction (integrating industrial waste, alternative binders, and bio-based materials). The review also evaluates the potential of novel direct air-capture materials, assessing their feasibility for integration into construction processes and existing infrastructure. Key findings highlight significant advancements, quantify CO2 absorption potentials across various construction materials, and reveal critical knowledge gaps, thereby providing a strategic roadmap for future research direction toward a low-carbon, climate-resilient built environment. Full article
(This article belongs to the Special Issue Advances in Natural Building and Construction Materials (2nd Edition))
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36 pages, 2395 KB  
Review
Advancements in Carbon Capture, Utilization, and Storage (CCUS): A Comprehensive Review of Technologies and Prospects
by Nisreen Salem, Kamalpreet Kaur Brar, Ali Asgarian, Kulwinder Kaur, Sara Magdouli and Nancy N. Perreault
Clean Technol. 2025, 7(4), 109; https://doi.org/10.3390/cleantechnol7040109 - 4 Dec 2025
Cited by 1 | Viewed by 2026
Abstract
Carbon dioxide (CO2) is the most significant anthropogenic greenhouse gas (GHG), accounting for approximately 81% of total emissions, with methane (CH4), nitrous oxide (N2O), and fluorinated gases contributing the remainder. Rising atmospheric CO2 concentrations, driven primarily [...] Read more.
Carbon dioxide (CO2) is the most significant anthropogenic greenhouse gas (GHG), accounting for approximately 81% of total emissions, with methane (CH4), nitrous oxide (N2O), and fluorinated gases contributing the remainder. Rising atmospheric CO2 concentrations, driven primarily by fossil fuel combustion, industrial processes, and transportation, have surpassed the Earth’s natural sequestration capacity, intensifying climate change impacts. Carbon Capture, Utilization, and Storage (CCUS) offers a portfolio of solutions to mitigate these emissions, encompassing pre-combustion, post-combustion, oxy-fuel combustion, and direct air capture (DAC) technologies. This review synthesizes advancements in CO2 capture materials including liquid absorbents (amines, amino acids, ionic liquids, hydroxides/carbonates), solid adsorbents (metal–organic frameworks, zeolites, carbon-based materials, metal oxides), hybrid sorbents, and emerging hydrogel-based systems and their integration with utilization and storage routes. Special emphasis is given to CO2 mineralization using mine tailings, steel slag, fly ash, and bauxite residue, as well as biological mineralization employing carbonic anhydrase (CA) immobilized in hydrogels. The techno-economic performance of these pathways is compared, highlighting that while high-capacity sorbents offer scalability, hydrogels and biomineralization excel in low-temperature regeneration and integration with waste valorization. Challenges remain in cost reduction, material stability under industrial flue gas conditions, and integration with renewable energy systems. The review concludes that hybrid, cross-technology CCUS configurations combining complementary capture, utilization, and storage strategies will be essential to meeting 2030 and 2050 climate targets. Full article
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38 pages, 1493 KB  
Review
From Mineral Salts to Smart Hybrids: Coagulation–Flocculation at the Nexus of Water, Energy, and Resources—A Critical Review
by Faiçal El Ouadrhiri, Ebraheem Abdu Musad Saleh and Amal Lahkimi
Processes 2025, 13(11), 3405; https://doi.org/10.3390/pr13113405 - 23 Oct 2025
Cited by 1 | Viewed by 2721
Abstract
Coagulation–flocculation, historically reliant on simple inorganic salts, has evolved into a technically sophisticated process that is central to the removal of turbidity, suspended solids, organic matter, and an expanding array of micropollutants from complex wastewaters. This review synthesizes six decades of research, charting [...] Read more.
Coagulation–flocculation, historically reliant on simple inorganic salts, has evolved into a technically sophisticated process that is central to the removal of turbidity, suspended solids, organic matter, and an expanding array of micropollutants from complex wastewaters. This review synthesizes six decades of research, charting the transition from classical aluminum and iron salts to high-performance polymeric, biosourced, and hybrid coagulants, and examines their comparative efficiency across multiple performance indicators—turbidity removal (>95%), COD/BOD reduction (up to 90%), and heavy metal abatement (>90%). Emphasis is placed on recent innovations, including magnetic composites, bio–mineral hybrids, and functionalized nanostructures, which integrate multiple mechanisms—charge neutralization, sweep flocculation, polymer bridging, and targeted adsorption—within a single formulation. Beyond performance, the review highlights persistent scientific gaps: incomplete understanding of molecular-scale interactions between coagulants and emerging contaminants such as microplastics, per- and polyfluoroalkyl substances (PFAS), and engineered nanoparticles; limited real-time analysis of flocculation kinetics and floc structural evolution; and the absence of predictive, mechanistically grounded models linking influent chemistry, coagulant properties, and operational parameters. Addressing these knowledge gaps is essential for transitioning from empirical dosing strategies to fully optimized, data-driven control. The integration of advanced coagulation into modular treatment trains, coupled with IoT-enabled sensors, zeta potential monitoring, and AI-based control algorithms, offers the potential to create “Coagulation 4.0” systems—adaptive, efficient, and embedded within circular economy frameworks. In this paradigm, treatment objectives extend beyond regulatory compliance to include resource recovery from coagulation sludge (nutrients, rare metals, construction materials) and substantial reductions in chemical and energy footprints. By uniting advances in material science, process engineering, and real-time control, coagulation–flocculation can retain its central role in water treatment while redefining its contribution to sustainability. In the systems envisioned here, every floc becomes both a vehicle for contaminant removal and a functional carrier in the broader water–energy–resource nexus. Full article
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24 pages, 1738 KB  
Review
Biomineralization Mediated by Iron-Oxidizing Microorganisms: Implication for the Immobilization and Transformation of Heavy Metals in AMD
by Siyu Li, Chengcheng Li, Xubo Gao, Mengyun Zhu, Huihui Li and Xue Wang
Minerals 2025, 15(8), 868; https://doi.org/10.3390/min15080868 - 17 Aug 2025
Cited by 1 | Viewed by 2132
Abstract
Iron, an essential element for virtually all known organisms, serves not only as a micronutrient but also as an energy source for bacteria. Iron-oxidizing microorganisms mediate Fe(II) oxidation under diverse redox conditions, yielding amorphous iron (hydr)oxides or crystalline iron minerals. This globally significant [...] Read more.
Iron, an essential element for virtually all known organisms, serves not only as a micronutrient but also as an energy source for bacteria. Iron-oxidizing microorganisms mediate Fe(II) oxidation under diverse redox conditions, yielding amorphous iron (hydr)oxides or crystalline iron minerals. This globally significant biogeochemical process drives modern iron cycling across terrestrial and aquatic ecosystems. The resulting biomineralization not only produces secondary minerals but also effectively immobilizes heavy metals, offering a sustainable strategy for environmental remediation. This review systematically examines (1) the biogeochemical mechanisms and mineralogical signatures of Fe(II) oxidation by four distinct iron oxidizers: acidophilic aerobes (e.g., Acidithiobacillus), neutrophilic microaerophiles (e.g., Gallionella), nitrate-reducing anaerobes (e.g., Acidovorax), and anoxygenic phototrophs (e.g., Rhodobacter); (2) research advances in heavy metal immobilization by biogenic iron minerals: adsorption, coprecipitation, and structural incorporation; and (3) the impact of pH, temperature, organic matter, and coexisting ions on Fe(II) oxidation efficiency and iron mineral formation by iron-oxidizing bacteria. By characterizing iron-oxidizing bacterial species and their functional processes under varying pH and redox conditions, this study provides critical insights into microbial behaviors driving the evolution of acid mine drainage (AMD). Full article
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18 pages, 19925 KB  
Article
The Precipitation of Calcium Carbonate in the Presence of Macromolecules Isolated from Corals
by Jasminka Kontrec, Nives Matijaković Mlinarić, Damir Kralj, Giuseppe Falini, Atiđa Selmani, Stefano Goffredo and Branka Njegić Džakula
Colloids Interfaces 2025, 9(4), 50; https://doi.org/10.3390/colloids9040050 - 15 Aug 2025
Viewed by 1475
Abstract
This study investigated the CaCO3 spontaneous precipitation in the presence of soluble organic macromolecules (SOMs) extracted from the skeleton of Mediterranean colonial coral species, symbiotic Cladocora caespitosa (SOM-CCA) and asymbiotic Astroides calycularis (SOM-ACL). This approach was used as a model to explore [...] Read more.
This study investigated the CaCO3 spontaneous precipitation in the presence of soluble organic macromolecules (SOMs) extracted from the skeleton of Mediterranean colonial coral species, symbiotic Cladocora caespitosa (SOM-CCA) and asymbiotic Astroides calycularis (SOM-ACL). This approach was used as a model to explore biomineralization processes in marine organisms. The research was conducted in systems without or with the addition of Mg2+ (Mg/Ca molar ratio was 5:1) and/or SOMs (concentration range was 0.5–4 ppm). In the model system (system without Mg2+ or SOMs), only vaterite spherulites precipitated, while in the system with added Mg2+, only aragonite irregular aggregates were observed. Although the addition of SOMs did not influence the polymorphic composition of the CaCO3 precipitates, it led to noticeable changes in induction time and morphology of CaCO3 crystals, and these effects were stronger in the presence of SOM-ACL. By comparing systems containing both Mg2+ and SOM with the model system as well as with systems where Mg2+ or SOMs were added individually, the dominant role of Mg2+ in the aragonite formation was observed. However, the combined effect of Mg2+ and both SOMs enhanced the inhibition of CaCO3 precipitation. This inhibitory effect was particularly enhanced in the system combining Mg2+ and SOM-ACL. Full article
(This article belongs to the Special Issue Ten Years Without Nikola Kallay)
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15 pages, 8425 KB  
Article
The Biocorrosion of a Rare Earth Magnesium Alloy in Artificial Seawater Containing Chlorella vulgaris
by Xinran Yao, Qi Fu, Guang-Ling Song and Kai Wang
Materials 2025, 18(15), 3698; https://doi.org/10.3390/ma18153698 - 6 Aug 2025
Viewed by 715
Abstract
In the medical field, magnesium (Mg) alloys have been widely used due to their excellent antibacterial properties and biodegradability. However, in the marine environment, the antibacterial effect may be greatly attenuated, and consequently, microorganisms in the ocean are likely to adhere to the [...] Read more.
In the medical field, magnesium (Mg) alloys have been widely used due to their excellent antibacterial properties and biodegradability. However, in the marine environment, the antibacterial effect may be greatly attenuated, and consequently, microorganisms in the ocean are likely to adhere to the surface of Mg alloys, resulting in biocorrosion damage, which is really troublesome in the maritime industry and can even be disastrous to the navy. Currently, there is a lack of research on the biocorrosion of Mg alloys that may find important applications in marine engineering. In this paper, the biocorrosion mechanism of the Mg alloy Mg-3Nd-2Gd-Zn-Zr caused by Chlorella vulgaris (C. vulgaris), a typical marine microalga, was studied. The results showed that the biomineralization process in the artificial seawater containing a low concentration of C. vulgaris cells was accelerated compared with that in the abiotic artificial seawater, leading to the deposition of CaCO3 on the surface to inhibit the localized corrosion of the Mg alloy, whereas a high concentration of C. vulgaris cells produced a high content of organic acids at some sites through photosynthesis to significantly accelerate the surface film rupture at some sites and severe localized corrosion there, but meanwhile, it resulted in the formation of a more protective biomineralized film in the other areas to greatly alleviate the corrosion. The contradictory biocorrosion behaviors on the Mg-3Nd-2Gd-Zn-Zr alloy induced by C. vulgaris were finally explained by a mechanism proposed in the paper. Full article
(This article belongs to the Section Corrosion)
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16 pages, 5609 KB  
Review
Research Progress in the Remediation of Arsenic- and Cadmium-Contaminated Groundwater Mediated by Iron and Manganese Biomineralization
by Feixing Li, Jixiang Cai, Xinxin Zhao, Hui Liu, Fanfan Ju and Youwen Li
Catalysts 2025, 15(6), 570; https://doi.org/10.3390/catal15060570 - 9 Jun 2025
Cited by 3 | Viewed by 2483
Abstract
Arsenic (As) and cadmium (Cd) contamination in groundwater poses significant risks to human health and environmental sustainability. Iron–manganese minerals and associated microorganisms in subsurface environments exhibit remarkable potential for immobilizing and transforming toxic metal(loid)s through adsorption, redox reactions, and co-precipitation. This study integrates [...] Read more.
Arsenic (As) and cadmium (Cd) contamination in groundwater poses significant risks to human health and environmental sustainability. Iron–manganese minerals and associated microorganisms in subsurface environments exhibit remarkable potential for immobilizing and transforming toxic metal(loid)s through adsorption, redox reactions, and co-precipitation. This study integrates bibliometric analysis with mechanistic review strategies to systematically evaluate the roles of iron–manganese biomineralization in As/Cd stabilization. Bibliometric insights identify emerging research trends, including the application of biogenic oxides and microbial redox cycles in groundwater remediation. Mechanistic analysis reveals how microbial–mineral interactions regulate As/Cd sequestration, emphasizing the influence of environmental factors such as pH, redox conditions, and microbial metabolic pathways. Case studies demonstrate the viability of in situ remediation technologies leveraging these biogeochemical processes, though challenges persist in achieving consistent field-scale performance and long-term stability. Future efforts should prioritize optimizing microbial consortia, advancing real-time monitoring systems, and integrating biogeochemical strategies with engineered barriers. By synthesizing quantitative trends and mechanistic principles, this work provides actionable frameworks for enhancing natural attenuation and designing sustainable remediation systems for metal-contaminated groundwater. Full article
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23 pages, 1546 KB  
Review
From Microbes to Molecules: Synthetic Biology Approaches for Advanced Materials Design
by Roshini Ramachandran, Frank Macabenta, Grace Bettencourt and Shulammite Feng
BioChem 2025, 5(2), 12; https://doi.org/10.3390/biochem5020012 - 28 May 2025
Cited by 2 | Viewed by 3630
Abstract
Traditional materials synthesis often involves energy-intensive processes with significant waste generation and limited control over material properties. This review examines synthetic biology as a sustainable alternative for designing advanced materials with enhanced precision and versatility. It explores microbial biomineralization, detailing how microorganisms influence [...] Read more.
Traditional materials synthesis often involves energy-intensive processes with significant waste generation and limited control over material properties. This review examines synthetic biology as a sustainable alternative for designing advanced materials with enhanced precision and versatility. It explores microbial biomineralization, detailing how microorganisms influence the formation of mineral deposits and participate in key biogeochemical cycles. It highlights recent research advancements in using a wide variety of microorganisms for the synthesis of inorganic materials such as metal and metal oxide nanoparticles, quantum dots, magnetic nanoparticles, and thin films. The review also discusses the production and properties of various biopolymers. Important factors that can influence the size, morphology, and uniformity of these biomaterials are covered in detail. Emphasis is placed on advancements utilizing synthetic biology tools, such as protein engineering and genome editing, and recent research for creating smart and responsive materials. Considering the present limitations of synthetic biology, challenges related to scale-up, yield, and uniformity are discussed, and suggestions for future research are detailed. Full article
(This article belongs to the Special Issue Feature Papers in BioChem, 2nd Edition)
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23 pages, 9402 KB  
Review
Coupling of Intracellular Calcium Homeostasis and Formation and Secretion of Matrix Vesicles: Their Role in the Mechanism of Biomineralization
by Azzurra Margiotta
Cells 2025, 14(10), 733; https://doi.org/10.3390/cells14100733 - 17 May 2025
Cited by 4 | Viewed by 2789
Abstract
The human bone is a dynamic, highly vascularized tissue composed of 60–70% minerals, which include mainly calcium phosphate (CaP) in the form of hydroxyapatite (HA) crystals, 30% organic matrix composed of type I collagen fibers, and less than 5% water and lipids. The [...] Read more.
The human bone is a dynamic, highly vascularized tissue composed of 60–70% minerals, which include mainly calcium phosphate (CaP) in the form of hydroxyapatite (HA) crystals, 30% organic matrix composed of type I collagen fibers, and less than 5% water and lipids. The crystals are formed inside the matrix vesicles (MVs) and are then released in the organic collagen-based fibrous matrix. Extracellular matrix (ECM) formation and mineralization processes, named osteogenesis, are associated with human mesenchymal stem cells (hMSCs) undergoing differentiation into osteoblasts (osteoblastogenesis). Osteogenesis is regulated by multiple intracellular signaling and genetic pathways and by environmental factors. Calcium flow is finely regulated and plays a key role in both osteoblastogenesis and osteogenesis. The formation and accumulation of CaP, the biogenesis of MVs, their secretion, and the deposition of HA crystals to fill the organic bone matrix are the fundamental events in the biomineralization process. In this paper, I will describe and discuss the recent findings and hypothesis on the molecular mechanism regulating this process. Full article
(This article belongs to the Special Issue Signaling Regulation of Bone and Tooth Development)
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18 pages, 12290 KB  
Article
Structural Pattern Analysis in Patella vulgata Shells Using Raman Imaging
by María Gabriela Fernández-Manteca, Borja García García, Celia Gómez-Galdós, Jesús Mirapeix, Rosa Arniz-Mateos, Asier García-Escárzaga, Igor Gutiérrez-Zugasti, José Francisco Algorri, José Miguel López-Higuera, Alain A. Ocampo-Sosa, Luis Rodríguez-Cobo and Adolfo Cobo
Appl. Sci. 2025, 15(9), 5180; https://doi.org/10.3390/app15095180 - 7 May 2025
Cited by 1 | Viewed by 1402
Abstract
Patella vulgata shells preserve geochemical and structural variations that can provide insights into past environmental conditions. Their composition, primarily calcium carbonate with organic residues from the biomineralization process, is influenced by external factors, such as sea surface temperature. Raman spectroscopy has emerged as [...] Read more.
Patella vulgata shells preserve geochemical and structural variations that can provide insights into past environmental conditions. Their composition, primarily calcium carbonate with organic residues from the biomineralization process, is influenced by external factors, such as sea surface temperature. Raman spectroscopy has emerged as a rapid, non-destructive tool for studying biogenic carbonates, enabling the identification of crystalline phases, organic components, and ion distribution. In this study, Raman imaging was applied to six shell sections of P. vulgata live-collected from Langre Beach in Cantabria, Spain. Spectral data were acquired using a Raman probe with a 532 nm excitation laser, providing high-resolution mapping of structural and compositional features. The analysis revealed spatial variations in mineralogy, organic matrix distribution, and ion incorporation in the calcium carbonate lattice, suggesting patterns originating during shell formation. Notably, the results suggest a consistent relationship between the organic and mineral components of the shells, with carotenoid distribution and carbonate ion substitution in the calcium carbonate lattice following similar growth patterns. These findings highlight the potential of Raman spectroscopy for studying biomineralization processes and the environmental records preserved in marine mollusk shells. Full article
(This article belongs to the Special Issue Novel Laser-Based Spectroscopic Techniques and Applications)
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