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Search Results (982)

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Keywords = bio-functional activity

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30 pages, 1593 KB  
Review
Dynamic Hydrogels in Breast Tumor Models
by Girdhari Rijal and In-Woo Park
Gels 2025, 11(11), 855; https://doi.org/10.3390/gels11110855 (registering DOI) - 26 Oct 2025
Abstract
Fabricating breast tumor models that mimic the natural breast tissue-like microenvironment (normal or cancerous) both physically and bio-metabolically, despite extended research, is still a challenge. A native-mimicking breast tumor model is the demand since complex biophysiological mechanisms in the native breast tissue hinder [...] Read more.
Fabricating breast tumor models that mimic the natural breast tissue-like microenvironment (normal or cancerous) both physically and bio-metabolically, despite extended research, is still a challenge. A native-mimicking breast tumor model is the demand since complex biophysiological mechanisms in the native breast tissue hinder deciphering the root causes of cancer initiation and progression. Hydrogels, which mimic the natural extracellular matrix (ECM), are increasingly demanded for various biomedical applications, including tissue engineering and tumor modeling. Their biomimetic 3D network structures have demonstrated significant potential to enhance the breast tumor model, treatment, and recovery. Additionally, 3D tumor organoids cultivated within hydrogels maintain the physical and genetic traits of native tumors, offering valuable platforms for personalized medicine and therapy response evaluation. Hydrogels are broadly classified into static and dynamic hydrogels. Static hydrogels, however, are inert to external stimuli and do not actively participate in biological processes or provide scaffolding systems. Dynamic hydrogels, on the other hand, adapt and respond to the surrounding microenvironment or even create new microenvironments according to physiological cues. Dynamic hydrogels typically involve reversible molecular interactions—through covalent or non-covalent bonds—enabling the fabrication of hydrogels tailored to meet the mechanical and physiological properties of target tissues. Although both static and dynamic hydrogels can be advanced by incorporating active nanomaterials, their combinations with dynamic hydrogels provide enhanced functionalities compared to static hydrogels. Further, engineered hydrogels with adipogenic and angiogenic properties support tissue integration and regeneration. Hydrogels also serve as efficient delivery systems for chemotherapeutic and immunotherapeutic agents, enabling localized, sustained release at tumor sites. This approach enhances therapeutic efficacy while minimizing systemic side effects, supporting ongoing research into hydrogel-based breast cancer therapies and reconstructive solutions. This review summarizes the roles of dynamic hydrogels in breast tumor models. Furthermore, this paper discusses the advantages of integrating nanoparticles with dynamic hydrogels for drug delivery, cancer treatment, and other biomedical applications, alongside the challenges and future perspectives. Full article
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20 pages, 6325 KB  
Article
Activation of Inflammatory and Apoptosis Pathways on Human Gingival Fibroblasts Exposed to Dental Resin Composites
by Francesco De Angelis, Edoardo Sorrentino, Antonella Mazzone, Ylenia Della Rocca, Jacopo Pizzicannella, Oriana Trubiani, Giovanna Iezzi, Camillo D’Arcangelo, Guya Diletta Marconi and Francesca Diomede
Polymers 2025, 17(20), 2779; https://doi.org/10.3390/polym17202779 - 17 Oct 2025
Viewed by 326
Abstract
The use of dental composite resins has significantly increased over recent years, thanks to their esthetics and mechanical features, despite some doubts being raised about their biocompatibility. Residual methacrylate can be eluted from bulk composites, and its amount may significantly increase over time, [...] Read more.
The use of dental composite resins has significantly increased over recent years, thanks to their esthetics and mechanical features, despite some doubts being raised about their biocompatibility. Residual methacrylate can be eluted from bulk composites, and its amount may significantly increase over time, leading to cytotoxic effects that can involve several inflammatory patterns. The aim of this in vitro study was to evaluate the activation of the inflammatory pathway NFκB p65/MyD88/NALP3 and the apoptosis pathway of BCL-2/BAX/Caspase-3 (CASP-3) expression on human gingival fibroblasts (hGFs) after 24 h and 1-week exposure to the eluates of three heat-cured dental composite resins: GrandioSO, VOCO (GR); Enamel Plus HRi Biofunction, Micerium (BF); and Filtek universal restorative, 3M (FU). The results highlighted that NFκB p65/MyD88/NALP3 was activated after resin exposure in a time-dependent manner. Moreover, immunofluorescence and gene expression analyses showed that pro-apoptotic markers CASP-3 and BAX were elevated, while anti-apoptotic protein BCL-2 was suppressed in hGFs after dental resin exposure. The present in vitro study analyzed mechanisms related to cytotoxicity and apoptosis, suggesting ways to limit composite cytotoxicity through advancements in material technology. The activation of inflammation and apoptotic pathways appeared to be material-dependent, and was less pronounced with BF and FU, which could hypothetically indicate them being a safer clinical choice to preserve periodontal health in daily dental practice. Full article
(This article belongs to the Special Issue Advanced Polymeric Materials for Dental Applications III)
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24 pages, 5147 KB  
Article
Potential Distribution and Response to Climate Change in Puccinellia tenuiflora in China Projected Using Optimized MaxEnt Model
by Hao Yang, Xiaoting Wei, Manyin Zhang and Jinxin Zhang
Biology 2025, 14(10), 1426; https://doi.org/10.3390/biology14101426 - 16 Oct 2025
Viewed by 276
Abstract
Global climate change is accelerating and human pressures are intensifying, exerting profound impacts on biodiversity and ecosystem service functions. The accurate prediction of species distributions has thus become a critical research direction in ecological conservation and restoration. This study selected Puccinellia tenuiflora, [...] Read more.
Global climate change is accelerating and human pressures are intensifying, exerting profound impacts on biodiversity and ecosystem service functions. The accurate prediction of species distributions has thus become a critical research direction in ecological conservation and restoration. This study selected Puccinellia tenuiflora, a species distributed across China, as its research subject. Utilizing 169 occurrence records and 10 environmental variables, we applied a parameter-optimized MaxEnt model to simulate the species’ current and future (2050s–2090s) potential suitable habitats under the SSP126, SSP370, and SSP585 scenarios. The results identified the human footprint index (HFI, 43.3%) and temperature seasonality (Bio4, 26.9%) as the dominant factors influencing its distribution. The current suitable area is primarily concentrated in northern China, covering approximately 258.26 × 104 km2. Under all future scenarios, a contraction of suitable habitat is projected, with the most significant reduction observed under SSP585 by the 2090s (a decrease of 56.2%). The distribution centroid is projected to shift northeastward by up to 145.36 km. This study elucidates the response mechanism of P. tenuiflora distribution to climate change and human activities. The projected habitat contraction and spatial displacement highlight the potential vulnerability of this species to future climate change. These findings, derived from a rigorously optimized and spatially validated model, provide a scientific basis for the conservation, reintroduction, and adaptive management of P. tenuiflora under climate change. Full article
(This article belongs to the Section Ecology)
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39 pages, 3509 KB  
Review
Fatty Amines in Detergents and Cosmetics: Current State and Biocircular Perspectives
by Maria-Beatrice Coltelli, Annabel Serpico, Rosa Domenech, Mar Tronch, Carolina Galli, Paolo Sonzini, Clara Escrivà-Cerdán, Sergio Mastroianni, Andrea Lazzeri, Domenico Licursi and Anna Maria Raspolli Galletti
Cosmetics 2025, 12(5), 227; https://doi.org/10.3390/cosmetics12050227 - 15 Oct 2025
Viewed by 641
Abstract
Fatty amines are nitrogen-containing organic compounds synthesized from fatty acids, olefins, or alcohols, typically derived from natural oils or petrochemical sources. These molecules generally feature long hydrophobic alkyl chains ranging from C8 to C22 and can be positively charged on the nitrogen atom, [...] Read more.
Fatty amines are nitrogen-containing organic compounds synthesized from fatty acids, olefins, or alcohols, typically derived from natural oils or petrochemical sources. These molecules generally feature long hydrophobic alkyl chains ranging from C8 to C22 and can be positively charged on the nitrogen atom, which confer pronounced cationic surface activity. This property makes them highly effective as emulsifiers, conditioning agents, antistatic agents, and surfactants, particularly in industrial formulations and personal care products such as shampoos, conditioners, and creams. Historically, the production of fatty amines has relied heavily on petrochemical feedstocks, contributing significantly to greenhouse gas emissions, particularly CO2. In response to growing environmental concerns, there is an increasing shift toward renewable and sustainable raw materials, aligning with the principles of the circular economy. The cosmetics and detergent industries are at the forefront of this transition, actively integrating bio-based ingredients to minimize ecological impact. This review provides a comprehensive overview of the sources, synthetic pathways, and applications of fatty amines. It highlights their functional roles in detergents and cosmetic formulations and explores scientific and technological strategies aimed at enhancing sustainability across the fatty amine supply chain. Full article
(This article belongs to the Special Issue Advanced Cosmetic Sciences: Sustainability in Materials and Processes)
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16 pages, 2155 KB  
Article
Toxicological Evaluation and Antimicrobial Activity of a Natural Thymol–Eucalyptol-Based Mixture
by Boris Lira-Mejía, Luis Barrios-Arpi, Carlos Villaorduña, Tatiana Ancajima, José-Luis Rodríguez, Alejandro Romero, Víctor Puicón and Hugo Patiño
Toxics 2025, 13(10), 875; https://doi.org/10.3390/toxics13100875 - 14 Oct 2025
Viewed by 430
Abstract
Currently, safe alternatives with very low toxicity and good antimicrobial activity are being sought to replace chemical compounds that can be harmful to animal and human health. For this reason, this study evaluated the safety and biofunctional microbiocidal potential of an extract composed [...] Read more.
Currently, safe alternatives with very low toxicity and good antimicrobial activity are being sought to replace chemical compounds that can be harmful to animal and human health. For this reason, this study evaluated the safety and biofunctional microbiocidal potential of an extract composed of thymol and eucalyptol. Toxicity tests showed low toxicity in both chickens (2000 mg/kg bw) and Artemia salina (EC50 = 2003 mg/L) and Daphnia magna (EC50 = 87 mg/L), indicating a safe usage profile. Oxidative stress biomarkers (nitrite and MDA) and antioxidant enzymes (SOD and catalase) improved in treated chickens at 20 days of age. The hematological and biochemical parameters of the treated birds showed normal values similar to those of the control group chickens, with better protein levels and lower AST levels. Histology of the kidney, intestine, and liver showed no changes in any group, confirming the absence of systemic adverse effects. At the molecular level, an improvement in the expression of tight junction proteins (claudin and occludin) was observed, suggesting a strengthening of the intestinal barrier integrity. Finally, the extract demonstrated an antimicrobial effect (E. coli, C. perfringens, Salmonella sp. and Pseudomonas sp.) comparable to that of organic acids commonly used as food preservatives, positioning it as a promising alternative in applications. Full article
(This article belongs to the Special Issue Mechanisms of Toxicity of Chemical Compounds and Natural Compounds)
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14 pages, 6606 KB  
Article
Bio-Derived Porous Carbon/Nickel Oxide Composite for High-Performance Energy Storage Applications
by Aigerim R. Seitkazinova, Meruyert Nazhipkyzy, Kenes Kudaibergenov, Almagul Issanbekova, Nurgul S. Bergeneva, Alisher Abdisattar and Meiramgul Kyzgarina
J. Compos. Sci. 2025, 9(10), 561; https://doi.org/10.3390/jcs9100561 - 13 Oct 2025
Viewed by 281
Abstract
The development of bio-derived composites represents a sustainable and cost-effective strategy for advanced energy storage applications. In this work, a porous carbon/nickel oxide (NiO) composite was synthesized from orange peel via carbonization at 500 °C followed by KOH activation at 700 °C and [...] Read more.
The development of bio-derived composites represents a sustainable and cost-effective strategy for advanced energy storage applications. In this work, a porous carbon/nickel oxide (NiO) composite was synthesized from orange peel via carbonization at 500 °C followed by KOH activation at 700 °C and subsequent hydrothermal NiO modification. The resulting material exhibited a hierarchical porous structure with a high specific surface area (2120 m2 g−1 for OP_500_700 and 1968 m2 g−1 for NiO-modified OP_500_700_0.1M), with both values being significantly higher than that of the non-activated OP_500 (3.40–18.12 m2 g−1). Electrochemical evaluation revealed that the NiO-functionalized composite achieved a specific capacitance of 306.0 F g−1 at 5 mV s−1 and 281.5 F g−1 at 2 A g−1, surpassing the pristine activated carbon (281.9 F g−1 and 259.6 F g−1, respectively). In addition, both electrodes demonstrated excellent cycling stability, retaining more than 80% capacitance after 5000 charge–discharge cycles at a high current density of 20 A g−1, while the NiO-modified electrode further benefited from a self-activation effect leading to >100% retention. These findings emphasize the synergistic effects of hierarchical porosity and NiO pseudocapacitance, establishing orange peel-derived carbon/NiO composites as scalable and sustainable electrode materials for next-generation supercapacitors. Full article
(This article belongs to the Section Composites Applications)
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13 pages, 10246 KB  
Article
A Model of the Current Geographic Distribution and Predictions of Future Range Shifts of Lentinula edodes in China Under Multiple Climate Change Scenarios
by Wei-Jun Li, Rui-Heng Yang, Ting Guo, Sheng-Jin Wu, Yu Li and Da-Peng Bao
J. Fungi 2025, 11(10), 730; https://doi.org/10.3390/jof11100730 - 10 Oct 2025
Viewed by 639
Abstract
Due to its ecological functions, huge economic benefits, and excellent nutritional and physiological activities, Lentinula edodes is a very popular edible fungus in Asia, especially in China. Changes in the distribution and population of wild L. edodes play an important role in conservation, [...] Read more.
Due to its ecological functions, huge economic benefits, and excellent nutritional and physiological activities, Lentinula edodes is a very popular edible fungus in Asia, especially in China. Changes in the distribution and population of wild L. edodes play an important role in conservation, variety improvements, and breeding. This investigation detected wild L. edodes in 28 provinces and municipalities in China, encompassing approximately 300 regions and natural reserves. MaxEnt analysis of 53 effective distribution locations indicated that host plants, Bio19 (precipitation in the coldest quarter), Bio10 (mean temperature of the warmest quarter), and Bio17 (precipitation in the driest quarter) made the most critical contributions to this model. The areas of suitable and highly suitable habitats were 55.386 × 104 km2 and 88.493 × 104 km2, respectively. Under four climate change scenarios, the L. edodes distribution was predicted to decrease and the suitable habitat area shifted to the north and west of China. The decrease in highly suitable habitat area ranged from 21.155% in the 2070s under the ssp1-2.6 scenario to 90.522% in the 2050s under the ssp3-7.5 scenario. This sharp reduction in habitat areas suggests that we should take measures to prevent the deterioration of the environment and climate and thus to ensure the survival of L. edodes. Full article
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17 pages, 6472 KB  
Article
High-Mountain Tuber Products Improve Selectively the Development and Detoxifying Capacity of Lactobacilli Strains as an Innovative Culture Strategy
by Cecilia Hebe Orphèe, María Inés Mercado, Fernando Eloy Argañaraz Martínez, Mario Eduardo Arena and Elena Cartagena
Fermentation 2025, 11(10), 576; https://doi.org/10.3390/fermentation11100576 - 6 Oct 2025
Viewed by 526
Abstract
The study provides valuable insights into the sustainable utilization of edible tuber peels from the high mountains of the Argentinian Puna, which constitutes promising reserves of bioactive phenolic compounds with the potential to enhance the biofunctional properties of lactic acid bacteria. Thirty-two extracts [...] Read more.
The study provides valuable insights into the sustainable utilization of edible tuber peels from the high mountains of the Argentinian Puna, which constitutes promising reserves of bioactive phenolic compounds with the potential to enhance the biofunctional properties of lactic acid bacteria. Thirty-two extracts derived from peels of different varieties of tubers, such as Oxalis tuberosa Mol., Ullucus tuberosus Caldas, and Solanum tuberosum L. were incorporated into lactobacilli cultures and individually evaluated. These selectively enhance the development of the probiotic strain Lactiplantibacillus plantarum ATCC 10241 and of Lacticaseibacillus paracasei CO1-LVP105 from ovine origin, without promoting the growth of a pathogenic bacteria set (Escherichia coli O157:H12 and ATCC 35218, Salmonella enterica serovar Typhimurium ATCC 14028, and S. corvalis SF2 and S. cerro SF16), in small amounts. To determine the main phenolic group concentrated in the phytoextracts, a bio-guided study was conducted. The most significant results were obtained by O. tuberosa phytochemicals added to the culture medium at 50 µg/mL, yielding promising increases in biofilm formation (78% for Lp. plantarum and 43% for L. paracasei) and biosurfactant activity (112% for CO1-LVP105 strain). These adaptive strategies developed by bacteria possess key biotechnological significance. Furthermore, the bio-detoxification capacity of phenol and o-phenyl phenol, particularly of the novel strain CO1-LVP105, along with its mode of action and genetic identification, is described for the first time to our knowledge. In conclusion, lactobacilli strains have potential as fermentation starters and natural products, recovered from O. tuberosa peels, and added into culture media contribute to multiple bacterial biotechnological applications in both health and the environment. Full article
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25 pages, 5732 KB  
Article
1-Carboxy-2-phenylethan-1-aminium Iodide 2-Azaniumyl-3-phenylpropanoate Crystals: Properties and Its Biochar-Based Application for Iodine Enrichment of Parsley
by Aitugan Sabitov, Seitzhan Turganbay, Almagul Kerimkulova, Yerlan Doszhanov, Karina Saurykova, Meiram Atamanov, Arman Zhumazhanov and Didar Bolatova
Appl. Sci. 2025, 15(19), 10752; https://doi.org/10.3390/app151910752 - 6 Oct 2025
Viewed by 357
Abstract
Iodine deficiency remains a significant nutritional problem, which stimulates the search for sustainable approaches to biofortification of vegetable crops. The aim of the work was to develop a “smart” bio-iodine fertilizer based on the organoiodide complex 1-carboxy-2-phenylethan-1-aminium iodide 2-azaniumyl-3-phenylpropanoate (PPI) and highly porous [...] Read more.
Iodine deficiency remains a significant nutritional problem, which stimulates the search for sustainable approaches to biofortification of vegetable crops. The aim of the work was to develop a “smart” bio-iodine fertilizer based on the organoiodide complex 1-carboxy-2-phenylethan-1-aminium iodide 2-azaniumyl-3-phenylpropanoate (PPI) and highly porous biochar from agro-waste, assessing its efficiency on the parsley model. PPI was synthesized and characterized (IR/UV spectroscopy, thermal analysis), and biochar was obtained by KOH activation and studied by low-temperature nitrogen adsorption (S_BET) methods, as well as standard physico-chemical characterization. The granulated composition PPI + biochar (BIOF) was tested in pot experiments in comparison with KI and control. The biomass of leaves and roots, iodine and organic nitrogen content, and antioxidant indices (ascorbic acid, total polyphenols, antioxidant activity) were assessed. BIOF provided a significant increase in yield and nutrition: leaf mass reached 86.55 g/plant versus 77.72 g/plant with KI and 65.04 g/plant in the control; root mass—up to 8.25 g/plant (p < 0.05). Iodine content in leaves and roots increased to 11.86 and 13.23 mg/kg (d.w.), respectively, while organic nitrogen levels increased simultaneously (57.37 and 36.63 mg/kg). A significant increase in the antioxidant status was noted (ascorbic acid 36.46 mg/100 g dry weight; antioxidant activity 44.48 mg GA/g; polyphenols 23.79 mg GA/g). The presented data show that the combination of PPI with activated biochar forms an effective platform for controlled supply of iodine to plants, increasing the yield and functional qualities of products; the prospects for implementation are associated with field trials and dosage optimization. Full article
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27 pages, 1664 KB  
Review
Actomyosin-Based Nanodevices for Sensing and Actuation: Bridging Biology and Bioengineering
by Nicolas M. Brunet, Peng Xiong and Prescott Bryant Chase
Biosensors 2025, 15(10), 672; https://doi.org/10.3390/bios15100672 - 4 Oct 2025
Viewed by 850
Abstract
The actomyosin complex—nature’s dynamic engine composed of actin filaments and myosin motors—is emerging as a versatile tool for bio-integrated nanotechnology. This review explores the growing potential of actomyosin-powered systems in biosensing and actuation applications, highlighting their compatibility with physiological conditions, responsiveness to biochemical [...] Read more.
The actomyosin complex—nature’s dynamic engine composed of actin filaments and myosin motors—is emerging as a versatile tool for bio-integrated nanotechnology. This review explores the growing potential of actomyosin-powered systems in biosensing and actuation applications, highlighting their compatibility with physiological conditions, responsiveness to biochemical and physical cues and modular adaptability. We begin with a comparative overview of natural and synthetic nanomachines, positioning actomyosin as a uniquely scalable and biocompatible platform. We then discuss experimental advances in controlling actomyosin activity through ATP, calcium, heat, light and electric fields, as well as their integration into in vitro motility assays, soft robotics and neural interface systems. Emphasis is placed on longstanding efforts to harness actomyosin as a biosensing element—capable of converting chemical or environmental signals into measurable mechanical or electrical outputs that can be used to provide valuable clinical and basic science information such as functional consequences of disease-associated genetic variants in cardiovascular genes. We also highlight engineering challenges such as stability, spatial control and upscaling, and examine speculative future directions, including emotion-responsive nanodevices. By bridging cell biology and bioengineering, actomyosin-based systems offer promising avenues for real-time sensing, diagnostics and therapeutic feedback in next-generation biosensors. Full article
(This article belongs to the Special Issue Biosensors for Personalized Treatment)
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21 pages, 2596 KB  
Article
Self-Energy-Harvesting Pacemakers: An Example of Symbiotic Synthetic Biology
by Kuntal Kumar Das, Ashutosh Kumar Dubey, Bikramjit Basu and Yogendra Narain Srivastava
SynBio 2025, 3(4), 15; https://doi.org/10.3390/synbio3040015 - 4 Oct 2025
Viewed by 390
Abstract
While synthetic biology has traditionally focused on creating biological systems often through genetic engineering, emerging technologies, for example, implantable pacemakers with integrated piezo-electric and tribo-electric materials are beginning to enlarge the classical domain into what we call symbiotic synthetic biology. These devices are [...] Read more.
While synthetic biology has traditionally focused on creating biological systems often through genetic engineering, emerging technologies, for example, implantable pacemakers with integrated piezo-electric and tribo-electric materials are beginning to enlarge the classical domain into what we call symbiotic synthetic biology. These devices are permanently attached to a body, although non-living or genetically unaltered, and closely mimic biological behavior by harvesting biomechanical energy and providing functions, such as autonomous heart pacing. They form active interfaces with human tissues and operate as hybrid systems, similar to synthetic organs. In this context, the present paper first presents a short summary of previous in vivo studies on piezo-electric composites in relation to their deployment as battery-less pacemakers. This is then followed by a summary of a recent theoretical work using a damped harmonic resonance model, which is being extended to mimic the functioning of such devices. We then extend the theoretical study further to include new solutions and obtain a sum rule for the power output per cycle in such systems. In closing, we present our quantitative understanding to explore the modulation of the quantum vacuum energy (Casimir effect) by periodic body movements to power pacemakers. Taken together, the present work provides the scientific foundation of the next generation bio-integrated intelligent implementation. Full article
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25 pages, 6201 KB  
Article
Modeling the Habitat Suitability and Range Shift of Daphniphyllum macropodum in China Under Climate Change Using an Optimized MaxEnt Model
by Yangzhou Xiang, Suhang Li, Qiong Yang, Jiaojiao Liu, Ying Liu, Ling Zhao, Hua Lin, Yang Luo, Jun Ren, Xuqiang Luo and Hua Wang
Biology 2025, 14(10), 1360; https://doi.org/10.3390/biology14101360 - 3 Oct 2025
Viewed by 358
Abstract
Climate change continues to threaten global biodiversity, making it essential to assess how keystone species may shift their distributions and to use these findings to inform conservation planning. This study evaluated the current and future habitat suitability of D. macropodum, an important [...] Read more.
Climate change continues to threaten global biodiversity, making it essential to assess how keystone species may shift their distributions and to use these findings to inform conservation planning. This study evaluated the current and future habitat suitability of D. macropodum, an important tree species within subtropical evergreen broad-leaved forests in China, using 354 occurrence records and a suite of environmental variables. A parameter-optimized MaxEnt model (calibrated with ENMeval; RM = 4, FC = QHPT) was applied to simulate the species’ present distribution and projected changes under three climate scenarios (SSP126, SSP245, SSP585). The main factors influencing distribution were determined to be moisture and temperature seasonality, with the precipitation of the coldest quarter (Bio19, 36.3%), the mean diurnal range (Bio2, 37.5%), and the precipitation of the warmest quarter (Bio18, 14.2%) jointly contributing 88.0% of the total influence. The model projections indicated a 40.1% reduction in the total number of suitable habitats under high-emission scenarios (SSP585) by the 2090s, including a loss of over 80% of highly suitable areas. Centroid movements also diverged across the scenarios: a southwestern shift under SSP126 and SSP245 contrasted with a southeastern shift under SSP585, with each accompanied by significant habitat fragmentation. Key climate refugia were identified primarily in central Taiwan Province and the mountainous zones of Zhejiang and Fujian Provinces, which should be prioritized for conservation activities. These insights offer a foundational understanding for the conservation of D. macropodum and other ecologically similar subtropical evergreen species. However, direct extrapolation to other taxa should be made cautiously, as specific responses may vary based on differing ecological tolerances and dispersal capacities. Further research is needed to test the generalizability of these patterns across diverse plant functional types. Full article
(This article belongs to the Section Conservation Biology and Biodiversity)
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13 pages, 1671 KB  
Article
Genome-Wide Identification and Expression Analysis of the bHLH Transcription Factor Family in Lilium bakerianum var. rubrum
by Zhijia Gu, Mingcheng Wang, Minhui Zhang, Junji Chen and Hongzhi Wu
Genes 2025, 16(10), 1153; https://doi.org/10.3390/genes16101153 - 28 Sep 2025
Viewed by 449
Abstract
Background/Objectives: The basic helix–loop–helix (bHLH) transcription factor family regulates plant development, metabolism, and stress responses. Yet, its genome-wide composition remains unexplored in Lilium bakerianum var. rubrum (LBVR), an ornamental lily valued for its floral traits. This study aimed to identify, classify, and profile [...] Read more.
Background/Objectives: The basic helix–loop–helix (bHLH) transcription factor family regulates plant development, metabolism, and stress responses. Yet, its genome-wide composition remains unexplored in Lilium bakerianum var. rubrum (LBVR), an ornamental lily valued for its floral traits. This study aimed to identify, classify, and profile the bHLH family in LBVR using full-length transcriptomic resources. Methods: PacBio HiFi full-length transcriptome sequencing was combined with Illumina RNA-seq for accurate structural annotation and expression quantification. Candidate bHLHs were identified by iTAK and HMMER-Pfam, and their physicochemical properties, secondary structures, motifs, and phylogenetic positions were examined. Expression patterns were analyzed across four floral stages (bud, initial bloom, full bloom, and late bloom). Results: A total of 113 high-confidence bHLH genes were identified, with ~90% successfully annotated. The proteins displayed variation in molecular weight, isoelectric point, structural features, and motif composition. Phylogenetic analysis placed them into 13 clades consistent with Arabidopsis subfamilies, revealing lineage-specific expansions and contractions. Expression profiling showed that 95 genes were active in at least one stage, with two transcriptional waves: a strong bud-to-initial-bloom activation and a secondary wave spanning anthesis. Seventeen genes were expressed exclusively at the bud stage, suggesting roles in early floral-organ initiation and pigmentation. Conclusions: This work provides the first genome-wide characterization of bHLHs in LBVR. The integrated sequencing approach generated a robust catalogue and developmental expression map, offering candidates for functional studies and resources for breeding in lilies. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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24 pages, 6918 KB  
Article
Effects of Biofertilizer and Green Manure on Soil Bacterial Community in Korla Fragrant Pear Orchard
by Jie Li, Xing Shen, Bolang Chen, Zhanyi He, Linsen Yan, Lele Yang, Bangxin Ding and Zhongping Chai
Microorganisms 2025, 13(10), 2252; https://doi.org/10.3390/microorganisms13102252 - 25 Sep 2025
Viewed by 305
Abstract
The sustainability of Korla fragrant pear orchards has been increasingly threatened by prolonged intensive agricultural practices. In response, biofertilizers and green manures have gained attention due to their potential to enhance soil structure, activate microbial functions, and improve nutrient uptake. However, the dynamic [...] Read more.
The sustainability of Korla fragrant pear orchards has been increasingly threatened by prolonged intensive agricultural practices. In response, biofertilizers and green manures have gained attention due to their potential to enhance soil structure, activate microbial functions, and improve nutrient uptake. However, the dynamic changes in soil bacterial communities under such interventions remain inadequately understood. This study was conducted from 2022 to 2023 in 7- to 8-year-old Korla fragrant pear orchards in Bayin’guoleng Mongol Autonomous Prefecture, Xinjiang. The treatments included: conventional fertilization (CK), biofertilizer (JF), oil sunflowers (DK1) with 25 cm row spacing and a seeding rate of 27 kg·hm−2, oil sunflowers (DK2) with 25 cm row spacing and a seeding rate of 33 kg·hm−2, sweet clover (CM1) with 20 cm row spacing and a seeding rate of 21 kg·hm−2, and sweet clover (CM2) with 20 cm row spacing and a seeding rate of 27 kg·hm−2. During the 2023 pear season, soil samples from the 0–20 cm layer were collected at the fruit setting, expansion, and maturity stages. Their physical and chemical properties were analyzed, and the structure and diversity of the soil bacterial community were examined using 16S rRNA gene high-throughput sequencing. Fruit yield was assessed at the maturity stage. Compared to CK, the relative abundance of Actinobacteria increased by 101.00%, 38.99%, and 50.38% in the JF, DK2, and CM1 treatments, respectively. DK1 and CM1 treatments resulted in a 152.28% and 145.70% increase in the relative abundance of the taxon Subgroup_7, while JF and DK2 treatments enhanced the relative abundance of the taxon Gitt-GS-136 by 318.91% and 324.04%, respectively. The Chao1 index for CM2 was 18.76% higher than CK. LEfSe analysis showed that the DK2 and CM2 treatments had a more significant regulatory effect on bacterial community structure. All treatments led to higher fruit numbers and yield compared to CK, with JF showing the largest yield increase. Fertilizer type, soil nutrients, and bacterial community structure all significantly positively influenced pear yield. In conclusion, high-density oil sunflower planting is the most effective approach for maintaining soil microbial community stability, followed by low-density sweet clover. This study provides a systematic evaluation of the dynamic effects of bio-fertilizers and different green manure planting patterns on soil microbial communities in Korla fragrant pear orchards, presenting practical, microbe-based strategies for sustainable orchard management. Full article
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Article
Constructed Wetlands with Novel Substrate Exposed to Nano-Plastics: Mitigating the Effects of Substrate Enzyme and Ecological Processes
by Luming Wang, Juan Huang, Jing Tuo, Jin Xu and Xinwei Li
Toxics 2025, 13(9), 800; https://doi.org/10.3390/toxics13090800 - 20 Sep 2025
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Abstract
The widespread occurrence of nano-plastics (NPs) in aquatic environments poses emerging challenges to the pollutant removal performance and ecological stability of constructed wetlands (CWs). This study investigates the performance of calcium-modified (Ca-MBF) and manganese-modified basalt fiber (Mn-MBF) bio-nests as novel substrates to mitigate [...] Read more.
The widespread occurrence of nano-plastics (NPs) in aquatic environments poses emerging challenges to the pollutant removal performance and ecological stability of constructed wetlands (CWs). This study investigates the performance of calcium-modified (Ca-MBF) and manganese-modified basalt fiber (Mn-MBF) bio-nests as novel substrates to mitigate NP-induced inhibition of CWs. Laboratory-scale CWs were operated for 180 days to evaluate substrate-associated enzyme activities, microbial community structure, and functional gene profiles. Results showed that Mn-MBF bio-nests enhanced the activities of dehydrogenase (DHA), urease (UR), ammonia monooxygenase (AMO), nitrite oxidoreductase (NOR), nitrate reductase (NAR), nitrite reductase (NIR), and phosphatase (PST) by 86.2%, 65.5%, 127.0%, 62.8%, 131.5%, 65.3%, and 107.0%, respectively, compared with the control. In contrast, Ca-MBF bio-nests increased these enzyme activities by 48.6%, 53.5%, 67.0%, 30.6%, 95.0%, 45.3%, and 54.6%, respectively. MBF bio-nests also enhanced microbial diversity, enriched denitrifying and phosphorus-removing bacteria (e.g., Thauera, Plasticicumulans), and promoted extracellular polymeric substance secretion. Functional gene prediction indicated elevated abundances of nitrogen cycle-related genes, thereby enhancing nitrification, denitrification, and phosphorus removal processes. These synergistic effects collectively improved nitrification, denitrification, and phosphorus removal efficiency, with Mn-MBF showing superior performance. This study highlights MBF bio-nests as a sustainable strategy to enhance the resilience and long-term operational stability of CWs in environments impacted by nano-plastic pollution. Full article
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