Search Results (304)

Tropical sandy beaches are dynamic ecosystems where microbial communities play crucial roles in biogeochemical processes and tracking human impact. Despite their importance, these habitats remain underexplored. Here, using amplicon-based sequencing of bacterial (V3-V4 16S rRNA) and fungal (ITS2) markers, we first describe microbial communities inhabiting supralittoral–intertidal sediments of two contrasting sandy beaches in the Tadjoura Gulf (Djibouti Republic): Sagallou-Kalaf (SK, rural, siliceous sand) and Siesta Plage (SP, urban, calcareous sand). Sand samples were collected at low tide along 10 m transects perpendicular to the shoreline. Bacterial communities differed significantly between sites and along the sea-to-land gradient, suggesting an influence from both anthropogenic activity and sediment granulometry. SK was dominated by Escherichia-Shigella, Staphylococcus, and Bifidobacterium, associated with human and agricultural sources. SP showed higher richness, with enriched marine-associated genera such as Hoeflea, Xanthomarina, and Marinobacter, also linked to hydrocarbon degradation. Fungal diversity was less variable, but showed significant shifts along transects. SK communities were dominated by Kluyveromyces and Candida, while SP hosted a broader fungal assemblage, including Pichia, Rhodotorula, and Aureobasidium. The higher richness at SP suggests that calcium-rich sands, possibly due to their buffering capacity and greater moisture retention, offer more favorable conditions for microbial colonization. Full article

Background: A precise drug delivery system enables the optimization of treatments with minimal side effects if it can deliver medication only when activated by a specific light source. This study presents a controlled drug delivery system based on poly(lactic-co-glycolic acid) (PLGA) microparticles (MPs) designed for the sustained release of vancomycin hydrochloride. Methods: The MPs were co-loaded with indocyanine green (ICG), a near-infrared (NIR) responsive agent, and fabricated via the double emulsion method.They were characterized for stability, surface modification, biocompatibility, and antibacterial efficacy. Results: Dynamic light scattering and zeta potential analyses confirmed significant increases in particle size and surface charge reversal following chitosan coating. Scanning electron microscopy revealed uniform morphology in uncoated MPs (1–10 $\mathsf{\mu }$m) and irregular surfaces post-coating. Stability tests demonstrated drug retention for up to 180 days. Among formulations, PVI1 exhibited the highest yield (76.67 ± 1.3%) and encapsulation efficiency (56.2 ± 1.95%). NIR irradiation (808 nm) enhanced drug release kinetics, with formulation PVI4 achieving over 48.9% release, resulting in improved antibacterial activity. Chitosan-coated MPs (e.g., PVI4-C) effectively suppressed drug release without NIR light for up to 8 h, with cumulative release reaching only 10.89%. Without NIR light, bacterial colonies exceeded 1000 CFU; NIR-triggered release reduced them below 120 CFU. Drug release data fitted best with the zero-order and Korsmeyer–Peppas models, suggesting a combination of diffusion-controlled and constant-rate release behavior. Conclusions: These results demonstrate the promise of chitosan-coated NIR-responsive PLGA MPs for precise, on-demand antibiotic delivery and improved antibacterial performance. Full article

Understanding the distribution patterns of soil bacterial community structure and diversity across different forest types is essential for elucidating the mechanisms underlying microbial community assembly and its ecological drivers, particularly under the pressures of climate change. In this study, we examined six forest types—including four monocultures and two mixed-species stands—to systematically evaluate the structural composition, diversity metrics, and functional potential of soil bacterial communities. Significant differences in microbial structure and functional composition were observed among forest types. Mixed forests exhibited higher soil nutrient levels, more complex structures, and greater water retention capacity, resulting in significantly higher bacterial and functional diversity compared to monoculture forests. Bacterial diversity was greater in subsurface layers than in surface layers. Surface communities in monoculture forests showed relatively high structural heterogeneity, whereas deeper communities in mixed forests displayed more pronounced differentiation. The dominant bacterial phyla were mainly related to carbon and nitrogen metabolism, compound degradation, and anaerobic photosynthesis. Surface bacterial communities were primarily influenced by catalase activity, alkali-hydrolysable nitrogen, bulk density, and pH, whereas subsurface communities were largely controlled by pH, with supplementary regulation by nitrogen and potassium availability. Therefore, forest type and soil depth jointly influence the diversity, composition, and functional attributes of soil microbial communities by modulating soil physicochemical conditions. Full article

Since the mid-19th century, researchers have explored the potential of bio-based polymeric materials for diverse applications, with particular promise in medicine. This review provides a focused and detailed examination of natural and synthetic biopolymers relevant to tissue engineering and biomedical applications. It emphasizes the structural diversity, functional characteristics, and processing strategies of major classes of biopolymers, including polysaccharides (e.g., hyaluronic acid, alginate, chitosan, bacterial cellulose) and proteins (e.g., collagen, silk fibroin, albumin), as well as synthetic biodegradable polymers such as polycaprolactone, polylactic acid, and polyhydroxybutyrate. The central aim of this manuscript is to elucidate how intrinsic properties—such as molecular weight, crystallinity, water retention, and bioactivity—affect the performance of biopolymers in biomedical contexts, particularly in drug delivery, wound healing, and scaffold-based tissue regeneration. This review also highlights recent advancements in polymer functionalization, composite formation, and fabrication techniques (e.g., electrospinning, bioprinting), which have expanded the application potential of these materials. By offering a comparative analysis of structure–property–function relationships across a diverse range of biopolymers, this review provides a comprehensive reference for selecting and engineering materials tailored to specific biomedical challenges. It also identifies key limitations, such as production scalability and mechanical performance, and suggests future directions for developing clinically viable and environmentally sustainable biomaterial platforms. Full article

In this study, we explored the development and characterization of fungus-immobilized foamed bacterial cellulose (FBC) scaffolds using Pleurotus ostreatus and Aspergillus oryzae. FBC, a porous biomaterial with high structural integrity and resistance to enzymatic degradation, served as a three-dimensional matrix for fungal cultivation. The results indicated effective fungal immobilization, with the 1% A. oryzae-immobilized FBC group (FBC/1A) achieving the highest production yield. The water content (97%) and swelling behavior (95.9%) analyses revealed that P. ostreatus-immobilized FBC maintained high hydration levels and rehydration capacities, whereas A. oryzae immobilization led to slightly reduced water retention. Morphological assessments via SEM confirmed the presence of fungal-derived fibers integrated with native cellulose structures, suggesting successful immobilization. A thermogravimetric analysis demonstrated enhanced thermal stability in fungus-immobilized FBC, particularly in the A. oryzae group, while FTIR spectra suggested possible structural alterations induced by fungal activity. Collectively, these findings support the potential of fungal-immobilized FBC as a robust, biodegradable material with promising applications in biotechnology and sustainable material development. Full article

Low-surface-energy and wettability-based antifouling coatings have garnered increasing attention in marine applications owing to their environmentally friendly characteristics. However, their limited functionality often results in suboptimal long-term antifouling performance, particularly under dynamic marine conditions. To address these limitations, a polydimethylsiloxane (PDMS)-based slippery (PSL) coating was fabricated on TC4 titanium alloy by integrating surface silanization via (3-Aminopropyl)triethoxysilane (APTES), antimicrobial Ag-TiO₂ nanoparticles, laser-induced hierarchical microtextures, and silicone oil infusion. The resulting PSL coating exhibited excellent oil retention and stable interfacial slipperiness even after thermal aging. Compared with bare TC4, low-surface-energy Ag-containing coatings, Ag-containing superhydrophobic coatings, and conventional slippery liquid-infused porous surfaces (SLIPS), the PSL coating demonstrated markedly superior resistance to protein adsorption, bacterial attachment, and diatom settlement, indicating an enhanced synergistic antifouling effect. Furthermore, it significantly reduced the diatom concentration in the surrounding medium without complete eradication, underscoring its eco-friendly and non-disruptive antifouling mechanism. This study offers a scalable, durable, and environmentally benign antifouling strategy for marine surface protection. Full article

Fungal prosthetic joint infection (fPJI) is one of the orthopaedic pathologies where there is no clear evidence, guidelines or algorithm to guide the surgeon in its management. This is in addition to the difficulty with which these infections are diagnosed, isolated and treated. Fungi form notorious biofilms that are difficult to eradicate once formed and that display resistance to antimicrobial agents. These biofilms have been shown to act synergistically with biofilms of bacteria, further adding to medical treatment resistance. We have reviewed the literature for reports that describe the results of different methods in surgically treating fPJI. We found that surgical management with two stages remains the gold standard for treatment of fPJI, as is the case for bacterial PJI (bPJI). We have investigated medical treatment, debridement with implant retention (DAIR) and staged revisions and whether a reasonable recommendation can be made based on the best knowledge and practice available. From the data on bPJI, there exists a role for conservative management of acute PJI with debridement, antibiotics and implant retention (DAIR). While fPJI and bPJI both represent infections, the differences in our ability to detect these infections clinically, culture the pathogens and treat them with proper antimicrobial agents, along with the difference in the reported results of the surgical treatment, make us believe that these two types of infections should not be treated in the same manner. With all this in mind, we reviewed several reports in the literature on fPJI to determine the efficacy of current treatment modalities, including DAIR, which followed current guidelines for PJI. Data show an overall treatment success rate of 64.4% [range 17.4–100%]. Subgroup analysis revealed a success rate of 11.6% [range 0–28.7%] in patients treated with DAIR. There is no doubt that DAIR should not be encouraged as it consistently has a bad record. Although there are not enough studies or numbers of patients to show an evidence-based preference over one- or two-staged revisions, the two-stage revision of fPJI consistently shows better results and should be considered as the gold standard of management in cases of revision fPJI. This should also be coupled with proper expertise, follow-ups and recommended lengths of medical treatment, which should not be less than six months. From the review of these data, we have developed reasonable recommendations for the management of fPJI. These recommendations center on staged surgical debridement along with medical management. Medical treatment should be for at least 6 months under the guidance of an infectious disease team and based on intraoperative cultures. In the case of local antimicrobial treatment reported in the literature, many patients with fPJI were found to have a polymicrobial infection. As a result, it is our recommendation that antifungals as well as antibacterials should be incorporated into the cement spacer mix of these cases. Fungal PJI remains an exceedingly difficult pathology to treat and should be managed by experienced surgeons in a well-equipped institution. Full article

The protein fraction of slaughterhouse blood remains underutilized primarily due to challenges associated with its instability during processing and storage. This study aimed to develop stable bovine blood plasma gels using selected lactic acid bacteria and flaxseed oil cake flour. Various lactic acid bacteria strains were incorporated at concentrations of 5–20% (w/w), and gel properties such as pH, gelation time, yield stress, and freeze–thaw syneresis were evaluated. Optimal gelation was achieved at 20% inoculum, producing fibrin networks with yield stresses (372 Pa) comparable to recalcified controls (410 Pa), but accompanied by high serum loss and undesired acidic aromas at higher bacterial densities. Incorporating 5% hydrated flaxseed oil cake flour successfully reduced syneresis below 10%, improved water-holding capacity (135%), and prevented development of off-flavors, demonstrating beneficial interactions between flaxseed polysaccharides and blood plasma proteins. Thus, combining a 20% mixed lactic starter with 5% flaxseed cake flour yielded a stable plasma gel suitable for meat product applications, balancing rapid gel formation, high moisture retention, desirable rheological properties, and neutral sensory characteristics. Full article

Long-term monoculture of poplar plantations for industrial material production has been widely reported to cause severe soil degradation, while the presence of understory vegetation might enhance soil nitrogen (N) transformation and supply. This study employed a field experiment using a randomized block design with three blocks and four understory treatments, including understory removal, N-fixing species planting, single-species retention, and diverse vegetation retention, in poplar plantations on a mid-latitude alluvial plain in China over 6 years to assess the effects of different species and richness of understory on soil N transformation and related microbial traits via ¹⁵N assays and shotgun metagenomics. The results showed that understory removal significantly reduced soil N transformation rates, bacterial abundance, and gene abundance associated with N transformation. Compared to a single-species understory, retaining a diverse understory with high species richness significantly increased soil gross N transformation rate of mineralization by 149%, nitrification by 221%, and immobilization by 85%; comprehensively enriched dominant bacterial phyla; and elevated gene abundances of gdh_K15371, ureB, hao, and amoA_B associated with N transformation. No significant difference in N transformation rates existed between N-fixing species planting treatment and single-species retention treatment, while N-fixing species planting treatment specifically promoted the soil bacterial phyla Nitrospirae and Chloroflexi, and increased the gene abundances of gdh_K15371 and hao. These findings demonstrate that both introducing N-fixing species and an increase in species richness of the understory effectively promoted soil N transformation but that different underlying mechanisms existed. Planting N-fixing species selectively increased the soil bacterial phyla of Nitrospirae and Chloroflexi, whereas the increase in species richness broadly enriched soil bacterial diversity, thereby inducing the enrichment of the functional genes and enhancing soil N transformation. In conclusion, both planting N-fixing species and retaining diverse understory vegetation were effective strategies for maintaining sustainable management of poplar plantations by increasing soil N availability. Full article

Bacterial cellulose (BC), an extracellular polysaccharide synthesized by various bacterial strains. It exhibits high tensile strength, water retention, crystallinity, and biocompatibility, making it valuable in biomedical, cosmetic, food, textile, and paper industries. This study examined the effects of six carbon sources on BC production by Komagataeibacter sucrofermentans, identifying fructose as the most effective. A Box–Behnken experimental design was employed to investigate the effects of three variables (fructose concentration, temperature, and cultivation time) on cellulose yield. The optimized cultivation conditions were: fructose concentration of 227.5 g/L, temperature of 28.0 °C, and cultivation time of 295 h, resulting in a BC yield of 63.07 ± 2.91 g/L. Subsequently, BC’s potential as a bacteriophage carrier was assessed. Escherichia coli phage T4 and Staphylococcus aureus phage vB_SauS_CS1 (CS1) were immobilized within BC hydrogels, and their antibacterial activities were assessed through in vitro experiments. These findings suggest BC’s promise as a phage delivery platform for biomedical applications. Full article

Water table fluctuation alters environment properties and n-alkane transformation, leading to shifts in the groundwater microbial community and functions. A diesel-contaminated aquifer column experiment of seasonal water table fluctuation was designed to explore the mechanisms. Temporal changes in geochemical parameters, n-alkane concentration, bacterial community and functional gene composition were investigated. The results showed that water table fluctuation accelerated the depletion of the diesel n-alkane leakage point. Owing to the variations in the water table, the electron donors (dissolved organic carbon) and electron acceptors (dissolved oxygen, nitrate and sulfate) underwent regular changes, and the bacterial community structure was altered. Dissolved oxygen was the major parameter correlating with the abundance of aerobic functional genes (the sum of the alk_A, alk_R and alk_P) and was beneficial for enhancing the aerobic biodegradation function potential of n-alkanes. However, the static retention of the water table at the highest level inducing water saturation and hypoxia was the critical factor influencing the abundance of anaerobic functional genes (the sum of assA and mcrA) and was favorable for the anaerobic biodegradation function potential of n-alkane. Overall, this study links seasonal water table dynamics to n-alkane biodegradation function potential in aquifers, and suggests that the quality of recharge water, which impacts microbial community assembly and function, should be considered. Full article

Wetlands and meadows are two terrestrial ecosystems that are strikingly distinct in terms of hydrological conditions and biogeochemical characteristics. Wetlands generally feature saturated soils, high accumulation of organic matter, and hypoxic environments. They support unique microbial communities and play crucial roles as carbon sinks and nutrient retainers. In contrast, meadows are characterized by lower water supply, enhanced aeration, and accelerated turnover of organic matter. The transition from wetlands to meadows under global climate change and human activities has triggered severe ecological consequences in the Sanjiangyuan region, yet the mechanisms driving microbial network stability remain unclear. This study integrates microbial sequencing, soil physicochemical analyses, and structural equation modeling (SEM) to reveal systematic changes in microbial communities during wetland degradation. Key findings indicate: (1) critical soil parameter shifts (moisture: 48.5%→19.3%; SOM: −43.6%; salinity: +170%); (2) functional microbial restructuring with drought-tolerant Actinobacteria (+62.8%) and Ascomycota (+48.3%) replacing wetland specialists (Nitrospirota: −43.2%, Basidiomycota: −28.6%); (3) fundamental network reorganization from sparse wetland connections to hypercomplex meadow networks (bacterial nodes +344%, fungal edges +139.2%); (4) SEM identifies moisture (λ = 0.82), organic matter (λ = 0.68), and salinity (λ = −0.53) as primary drivers. Particularly, the collapse of methane-oxidizing archaea (−100%) and emergence of pathogenic fungi (+28.6%) highlight functional thresholds in degradation processes. These findings provide microbial regulation targets for wetland restoration, emphasizing hydrologic management and organic carbon conservation as priority interventions. Future research should assess whether similar microbial and network transitions occur in degraded wetlands across other alpine and temperate regions, to validate the broader applicability of these ecological thresholds. Restoration efforts should prioritize re-saturating soils, reducing salinity, and enhancing organic matter retention to stabilize microbial networks and restore essential ecosystem functions. Full article

This review systematically examines the critical mechanisms and process optimization strategies of algal–bacterial granular sludge (ABGS) technology in wastewater treatment. The key findings highlight the following: (1) enhanced pollutant removal—ABGS achieves >90% COD removal, >80% total nitrogen elimination via nitrification–denitrification coupling, and 70–95% phosphorus uptake through polyphosphate-accumulating organisms (PAOs), with simultaneous adsorption of heavy metals (e.g., Cu²⁺, Pb²⁺) via EPS binding; (2) energy-saving advantages—microalgal oxygen production reduces aeration energy consumption by 30–50% compared to conventional activated sludge, while the granular stability maintains >85% biomass retention under hydraulic shocks; (3) AI-driven optimization—machine learning models enable real-time prediction of nutrient removal efficiency (±5% error) by correlating microbial composition (e.g., Nitrosomonas abundance) with operational parameters (DO: 2–4 mg/L, pH: 7.5–8.5). This review further identifies EPS-mediated microbial co-aggregation and Chlorella–Pseudomonas cross-feeding as pivotal for system resilience. These advances position ABGS as a sustainable solution for low-carbon wastewater treatment, although challenges persist in scaling photobioreactors and maintaining symbiosis under fluctuating industrial loads. Full article

This study investigates the impact of two months of drought stress on the microbial diversity, enzyme activities and functional diversity in four agricultural soils (Gniewkowo (G); Lulkowo (L); Nieszawa (N); Suchatówka (S)) from Poland during summer season. The physicochemical parameters (pH, organic carbon, calcium carbonate, total nitrogen, nitrate, ammonium, total phosphorus and available phosphate), microbial abundance, community-level physiological profiling, and soil enzymes (acid and alkaline phosphatases, dehydrogenase and urease) were investigated at two time intervals: zero-week (T0) and the eighth week (T8). Generally, microbial enumeration showed higher bacterial populations (496.63 × 10⁴ CFU g⁻¹ dry soil) compared to actinomycetes (13.43 × 10⁴ CFU g⁻¹ dry soil), and the fungal population was the lowest (67.68 × 10² CFU g⁻¹ dry soil) at T8. Functional diversity showed a strong, statistically significant positive effect in the G, N and S sites at T8. Acidobacteriota and Actinobacteriota declined in most places, while Firmicutes, Crenarchaeota and drought-tolerant bacteria such as Gemmatimonadota exhibited resistance. The fungal communities showed site-specific responses, with an increase in drought-tolerant Mortierellomycota and Chytridiomycota and a decrease in Ascomycota and Basidiomycota, suggesting possible adaptability. Overall, the microbial populations, enzyme activity, and functional diversity were positively correlated with soil moisture content across all four investigated sites. The significance of organic matter, soil structure, and moisture retention in determining microbial resilience to drought is underscored by these changes in microbial diversity and function, which in turn affect nutrient cycling and soil ecosystem stability. The findings of our study indicate that soil biological activities in agricultural regions can be modified by a mere two months of drought. Full article

Microbial necromass carbon (MNC) is the dominant contributor to soil organic carbon (SOC). However, the contribution of MNC in different soil compartments to SOC sequestration has not been comprehensively studied, especially under the organic fertilizers input. To address this gap, we conducted a rice root box experiment by adding organic fertilizer (straw and straw biochar) and chemical fertilizer alone to red loamy paddy soil, respectively. We found that although SOC accumulation was stimulated by both biochar and straw in the rhizosphere, more substantial SOC was sequestered in the rhizosphere due to biochar addition (increased by 25.82% compared to straw addition). Additionally, the input of organic fertilizers resulted in varying degrees of MNC retention in the different soil compartments. Compared with that in bulk soil, fungal necromass carbon (FNC) content was reduced by 1.37% and 7.06%, and bacterial necromass carbon (BNC) content was reduced by 5.53% and 9.49% in the rhizosphere and hyphosphere, respectively, following straw addition. Conversely, the addition of biochar leads to a significant increase of FNC (increased by 2.92%) and BNC (increased by 2.00%) in the rhizosphere compared with bulk soil. However, straw addition also significantly enhanced SOC thermal stability within the rhizosphere and hyphosphere soils. Based on partial least squares path modeling, we found that SOC thermal stability was significantly and positively influenced by FNC, which was strongly associated with carbon degradation gene abundance. These results emphasize the critical role of soil compartments in SOC sequestration under organic fertilizer application and underscore the importance of FNC in enhancing SOC stability in the rhizosphere. Full article