Search Results (1,697)

To reveal how the altitude gradient regulates the effects of rhizosphere microbial dynamics on ecosystem multifunctionality in Hylodesmum podocarpum, a field experiment was conducted across four elevation transects (a.s. 896–1805 m) in the Qinling Mountains. The results showed that rhizosphere soil exhibited peak microbial diversity richness at 1805 m (HB4), with bacterial communities showing a strong interspecific cooperative relationship, while the fungal communities showed a competitive relationship. In addition, this study found the assembly process to be different. Bacterial assemblages changed from random processes (HB1, HB2, HB3) to deterministic processes (HB4), whereas fungal assemblages remained stochastic processes across all elevations. Our results also revealed that synergistic interactions among soil carbon, phosphorus, and nitrogen nutrient functions collectively enhanced nutrient-centered soil multifunctionality. Notably, carbon and phosphorus nutrient functions emerged as the primary drivers of soil multifunctionality. Further mechanistic analysis revealed that while soil pH exerted significant control over both carbon and nitrogen nutrient functions, microbial mediation exhibited functional specialization: bacterial communities predominantly regulated carbon cycling, whereas fungal communities played a more comprehensive role in modulating carbon, nitrogen, and phosphorus dynamics along with overall ecosystem multifunctionality. This finding suggested that altitude gradients indirectly affect the characteristics of the microbial community by regulating soil nutrient status, thereby driving changes in ecosystem multifunctionality. This finding provides new insights into how nutrients regulate ecosystem functions through microbial pathways. Full article

This study aimed to assess the anti-inflammatory properties of mare milk by analyzing immune markers in mice following gavage of mare milk. Metagenomic sequencing was employed to examine variations in the composition and functional profiles of the intestinal microbiota across different experimental groups. Bacterial diversity, abundance, and functional annotations of gut microbiota were evaluated for each group. The results show that, compared to the control group, the mare milk group exhibited a significant decrease in the pro-inflammatory cytokine IL-6 levels and a significant increase in secretory immunoglobulin A (SIgA) levels (p < 0.05). The fermented mare milk group and the pasteurized fermented mare milk group demonstrated a significant downregulation of the pro-inflammatory cytokines TNF-α and IL-1β, along with a significant increase in the anti-inflammatory cytokine IL-10 levels (p < 0.05). Additionally, metagenomic analysis revealed that both the mare milk and fermented mare milk groups were able to regulate the imbalance of the intestinal microenvironment by improving the diversity of the gut microbiota and reshaping its structure. Specifically, the mare milk group enhanced gut barrier function by increasing the abundance of Bacteroides acidifaciens, while the fermented mare milk group increased the proportion of Bacillota and the relative abundance of beneficial bacterial genera such as Faecalibaculum and Bifidobacterium. KEGG pathway annotation highlighted prominent functions related to carbohydrate and amino acid metabolism, followed by coenzyme and vitamin metabolism activities. In conclusion, mare milk and its fermented products demonstrate anti-inflammatory effects, particularly in modulating immune responses and inhibiting inflammatory cascades. Additionally, the administration of mare milk enhances the composition and metabolic activity of intestinal microbiota in mice, supporting intestinal microecological balance and overall gut health, and offering valuable insights for the development of mare milk-based functional foods. Full article

The rapid evolution of ventilators and their circuits, coupled with varying maximum usage durations set by different hospitals globally, poses a significant risk for the proliferation and transmission of nosocomial infections in intensive care settings. This study investigated temporal changes in bacterial community structure and predicted metabolic functions in ventilator circuits over a three-week period, with a specific focus on ESKAPE pathogens. The results of full-length 16S rRNA sequencing revealed dynamic shifts in bacterial communities, with an increased bacterial diversity and unique species prevalence in week-2 compared to week-1 and week-3. However, a marked emergence of pathogenic bacteria, including Serratia marcescens and Chryseobacterium indologenes, was observed in week-3 compared to week-1 and week-2. Additionally, the abundance of ESKAPE pathogens, including Klebsiella pneumoniae and Acinetobacter baumannii, was higher in week-3 compared to week-1 and week-2. Furthermore, the PCR analysis revealed a higher detection rate of Pseudomonas aeruginosa and K. pneumoniae in week-3 than in the previous weeks. FAPROTAX analysis further revealed a high abundance of specific functions associated with the pathogens of pneumonia, nosocomial, and septicemia in week-3 compared to the other two weeks, suggesting a shift toward more virulent or opportunistic pathogens with increased utilization of ventilator circuits. These findings highlight the microbial risks associated with prolonged use of ventilator circuits, underscoring the need for continuous microbial surveillance throughout their usage, and provide a foundation for optimizing infection control strategies in intensive care settings. Full article

Poultry production exposes birds to diverse environmental and physiological stressors that disrupt redox balance, impair gut–liver axis function, and undermine health and productivity. This study investigated the hepatoprotective and antioxidative effects of mangosteen pericarp extract (MPE) in an experimental model of diquat-induced oxidative stress in laying hens. A total of 270 Hy-Line White laying hens were randomly assigned to three groups: control group (CON), diquat-challenged group (DQ), and MEP intervention with diquat-challenged group (MQ), with six replicates of 15 birds each. The results showed that MPE supplementation effectively mitigated the hepatic oxidative damage caused by diquat, as evidenced by the increased ALT and AST activity, improved lipid metabolism, and reduced hepatic fibrosis. Mechanistically, MPE activated the NRF2/HO-1 antioxidant pathway, thus enhancing the liver’s ability to counteract ROS-induced damage and reducing lipid droplet accumulation in liver tissue. MPE supplementation restored intestinal barrier integrity by upregulating tight junction protein expression (Occludin-1 and ZO-1), enhancing MUC-2 expression, and thereby decreasing gut microbiota-derived LPS transferring from the intestine. Additionally, MPE also modulated gut microbiota composition by enriching beneficial bacterial genera such as Lactobacillus and Ruminococcus while suppressing the growth of potentially harmful taxa (e.g., Bacteroidales and UCG-010). Fecal microbiota transplantation (FMT) from MPE-treated donors into diquat-exposed recipients reproduced these beneficial effects, further highlighting the role of gut microbiota modulation in mediating MPE’s systemic protective actions. Together, these findings demonstrated that MPE alleviated DQ-induced liver injury and oxidative stress through a combination of antioxidant activity, protection of intestinal barrier function, and modulation of gut microbiota, positioning MPE as a promising natural strategy for mitigating oxidative stress-related liver damage by regulating the gut microbiota and gut–liver axis in poultry. Full article

The ecological interface between grasslands and farmlands forms a critical landscape component, significantly contributing to the stability and functioning of ecosystems within the agro-pastoral transition zone of northern China. Nevertheless, the variation patterns and interactions between soil physicochemical attributes and microbial community diversity at this interface remain poorly understood. In this study, we investigated nine sites located within 50 m of the grassland–farmland boundary in the Songnen Plain, northeastern China. We assessed the soil’s physicochemical properties and the composition of bacterial and fungal communities across these sites. Results indicated a declining gradient in soil physicochemical characteristics from grassland to farmland, except for pH and total phosphorus (TP). The composition of bacterial and fungal communities differed notably in response to contrasting land-use types across the ecological interface. Soil environmental variables were closely aligned with shifts observed in bacterial and fungal assemblages. Concentrations of total nitrogen (TN), available phosphorus (AP), alkali-hydrolyzable nitrogen (AN), and available potassium (AK) exhibited inverse correlations with both bacterial and fungal populations. Alterations in microbial community composition were significantly linked to TN, TP, total potassium (TK), AN, AP, AK, and soil pH levels. Variability in soil properties, as well as microbial biomass and diversity, was evident across the grassland–cropland boundary. Long-term utilization and conversion of grassland into cultivated land altered the soil’s physicochemical environment, thereby indirectly shaping the structure of microbial communities, including both bacteria and fungi. These findings provide a valuable basis for understanding the ecological implications of land-use transitions and inform microbial-based indicators for assessing soil health in agro-pastoral ecotones. Full article

Strawberry is a popular fruit with great commercial value. It is meaningful to study how to improve strawberry yield and quality in a sustainable way. In this research, the potential impacts of replacing chemical fertilizer (CF) with sheep manure organic fertilizer (SMOF) on strawberry rhizospheric bacteria, soil physicochemical properties, strawberry fruit yield, and nutritional quality were studied through a strawberry field experiment with 16 years of different fertilizer applications. This study showed that, compared with chemical fertilizer, SMOF effectively improved soil physicochemical properties and increased the relative abundance of beneficial bacteria, the absolute abundance of phosphorus-related functional genes pqqC and phoD and bacteria diversity, and enhanced synergistic action among strawberry rhizospheric bacteria. The yield, and the contents of total soluble solids, soluble sugar, soluble protein, and vitamin C, and sugar/acid ratio of strawberry fruit in SMOF treatment were significantly higher than in CF treatment by 40%, 21%, 15%, 46%, 23%, and 41%, respectively (p < 0.05). Pearson correlation coefficient analysis showed that strawberry fruit yield and nutritional quality were positive with soil pH, bacterial diversity, soil enzyme activity, and nutrient content, and negative with soil density. The results showed that long-term SMOF could efficiently improve strawberry performance and rhizospheric health. Full article

Improving agricultural by-product utilization can alleviate tropical feed shortages. This study used corn stover (CS, Zea mays L.) at the maturity stage as the material, with four silage treatments: control, lactic acid bacteria (LAB, Lactiplantibacillus plantarum), cellulase (AC, Acremonium cellulolyticus), and LAB+AC. After 60 days fermentation in plastic drum silos, the silos were opened for sampling. PacBio single-molecule real-time sequencing technology was used to study bacterial community structure, symbiotic network functionality, and pathogenic risk to clarify CS fermentation regulatory mechanisms. The CS contained 59.9% neutral detergent fiber and 7.1% crude protein. Additive-treated silages showed better quality than the control: higher lactic acid (1.64–1.83% dry matter, DM), lower pH (3.62–3.82), and reduced ammonia nitrogen (0.54–0.81% DM). Before ensiling, the CS was dominated by Gram-negative Rhizobium larrymoorei (16.30% of the total bacterial community). Functional prediction indicated that the microbial metabolism activity in diverse environments was strong, and the proportion of potential pathogens was relatively high (14.69%). After ensiling, Lactiplantibacillus plantarum as Gram-positive bacteria were the dominant species in all the silages (58.39–84.34% of the total bacterial community). Microbial additives facilitated the establishment of a symbiotic microbial network, where Lactiplantibacillus occupied a dominant position (p < 0.01). In addition, functional predictions showed an increase in the activity of the starch and sucrose metabolism and a decrease in the proportion of potential pathogens (0.61–1.95%). Among them, the synergistic effect of LAB and AC inoculants optimized the silage effect of CS. This study confirmed that CS is a potential high-quality roughage resource, and the application of silage technology can provide a scientific basis for the efficient utilization of feed resources and the stable development of animal husbandry in the tropics. Full article

Coffee pulp, the primary residue generated during the wet processing of Coffea arabica L., is frequently applied directly to fields as a crude soil amendment. However, this practice often lacks proper microbial stabilization, limiting its agronomic potential and posing risks due to the presence of phytotoxic compounds. In Colombia, disease-resistant varieties such as Coffea arabica L. var. Castillo and var. Cenicafé 1, developed by the National Coffee Research Center (Cenicafé), are the amongst the most widely cultivated varieties in the country; however, despite their widespread adoption, the microbial ecology of postharvest residues from these varieties remains poorly characterized. This study aimed to isolate and functionally characterize native microbial communities from the pulp of Coffea arabica var. Castillo and var. Cenicafé 1, and to evaluate their role in postharvest processing and organic waste management. Fresh pulp samples were collected from a wet-processing facility located in tropical mid-elevation zones. A total of 53 microbial isolates were recovered using culture-dependent techniques on selective media targeting yeasts, lactic acid bacteria (LAB), and filamentous fungi. Amplicon sequencing of the 16S rRNA gene (V3–V4 region) and ITS1 region was conducted to profile bacterial and fungal communities, revealing diverse microbial consortia dominated by Aspergillus, Lactobacillus, Leuconostoc, Pichia, and Saccharomyces species. Enzymatic screening indicated high pectinolytic and cellulolytic activity. Composting trials using inoculated pulp showed a ~40% reduction in composting time and improved nutrient content. These findings support the use of native microbiota to enhance composting efficiency and postharvest valorization, contributing to more sustainable and circular coffee systems. Full article

Wound healing is a complex process, and propolis, a natural resin with antimicrobial, anti-inflammatory, and antioxidant properties, emerges as a promising candidate for its treatment. This systematic review analyzed 26 studies on propolis-functionalized biomaterials. Great diversity was observed in materials and incorporation techniques, including direct blending, surface coating, and nanoencapsulation. Mostly based on polysaccharides like chitosan, pectin, and bacterial cellulose, these formulations showed biocompatibility, biodegradability, and promoted inflammation reduction and tissue repair. In vitro assays confirmed high biocompatibility (>80% cell viability) and antimicrobial activity, while in vivo studies validated regenerative benefits. Despite their potential, marked heterogeneity in propolis composition (intrinsically variable due to its botanical and geographical origin, and processing methods), coupled with diverse concentrations used and the lack of standardization in assessment methods and results reporting, significantly limits cross-study comparability and reproducibility. Overcoming these challenges requires promoting greater standardization in extraction, characterization, and evaluation protocols, including chemical fingerprinting and more detailed and consistent reporting of findings. Despite these limitations, propolis–polysaccharide systems hold strong clinical potential, with further standardization and well-designed preclinical studies being essential for their effective translation, especially in chronic wound management. Full article

Mollusks are among the most ecologically and economically significant invertebrates; yet, their associated microbiomes remain understudied relative to those of other metazoans. This scoping review synthesizes the current literature on the diversity, composition, functional roles, and ecological implications of molluscan microbiomes, with an emphasis on three major groups: gastropods, bivalves, and cephalopods. Drawing on studies from terrestrial, freshwater, and marine systems, we identified the dominant bacterial phyla, including Proteobacteria, Bacteroidetes, and Firmicutes, and explored how microbiota vary across different habitats, diets, tissue types, and host taxonomies. We examined the contribution of molluscan microbiomes to host functions, including digestion, immune modulation, stress responses, and nutrient cycling. Particular attention was given to the role of microbiota in shell formation, pollutant degradation, and adaptation to environmental stressors. The review also evaluated microbial interactions at different developmental stages and under aquaculture conditions. Factors influencing microbiome assembly, such as the host’s genetics, life history traits, and environmental exposure, were mapped using conceptual and graphical tools. Applications of molluscan microbiome research in aquaculture, conservation biology, and environmental biomonitoring are highlighted. However, inconsistencies in the sampling methods, taxonomic focus, and functional annotations limit the generalizability across taxa. We identify key knowledge gaps and propose future directions, including the use of meta-omics, standardized protocols, and experimental validation to deepen insights. By synthesizing emerging findings, this review contributes to a growing framework for understanding mollusk–microbiome interactions and their relevance to host fitness and ecosystem health. It further establishes the importance of mollusks as model systems for advancing microbiome science. Full article

Dictyophora indusiata cultivation is severely impeded by premature hyphal regression. This study elucidates the spatiotemporal dynamics of mycelial regression and associated microbial succession in both substrate and soil matrices across progressive regression stages (CK: normal growth; S1: initial recession; S2: advanced recession; S3: complete recession). Microscopic analysis revealed preferential mycelial regression in the substrate, preceding soil regression by 1–2 stages. High-throughput sequencing demonstrated significant fungal community restructuring, characterized by a sharp decline in Phallus abundance (substrate: 99.7% → 7.0%; soil: 78.3% → 5.5%) and concomitant explosive proliferation of Trichoderma (substrate: 0% → 45.2%; soil: 0.1% → 55.3%). Soil fungal communities exhibited a higher richness (Chao1, p < 0.05) and stability, attributed to functional redundancy (e.g., Aspergillus, Conocybe) and physical protection by organic–mineral complexes. Conversely, substrate bacterial diversity dominated, driven by organic matter availability (e.g., the Burkholderia–Caballeronia–Paraburkholderia complex surged to 59%) and optimized porosity. Niche analysis confirmed intensified competition in post-regression soil (niche differentiation) versus substrate niche contraction under Trichoderma dominance. Critically, Trichoderma overgrowing was mechanistically linked to (1) nutrient competition via activated hydrolases (e.g., Chit42) and (2) pathogenic activity (e.g., T. koningii causing rot). We propose ecological control strategies: application of antagonistic Bacillus subtilis (reducing Trichoderma by 63%), substrate C/N ratio modulation via soybean meal amendment, and Sphingomonas–biochar soil remediation. This work provides the first integrated microbial niche model for D. indusiata regression, establishing a foundation for sustainable cultivation. Full article

Background: Obesity and periodontitis are two chronic inflammatory diseases with a bidirectional relationship possibly mediated by microbial and immunologic signaling pathways. This narrative review aims to investigate how microbial dysbiosis and inflammation link these diseases, focusing on the interactions between the oral and gut microbiomes. Materials and methods: Peer-reviewed studies (2015–2024) from PubMed, MEDLINE, Ovid and Google Scholar were selected for their relevance to microbial dysbiosis and inflammation, prioritizing clear methodology. Non-peer-reviewed sources or studies lacking microbial/inflammatory data were excluded. Conflicting results and methodological differences, including sampling and study design, were assessed qualitatively on the basis of coherence and methodological rigor. Results: Obesity has been shown to significantly alter the composition of the oral microbiome, characterized by reduced diversity and an increased Firmicutes/Bacteroidetes ratio. At the same time, periodontal pathogens such as Porphyromonas gingivalis can invade the gut, impair barrier function and promote systemic inflammation. Both diseases share common inflammatory pathways involving adipokines and immune-system dysregulation, creating a feedback loop that exacerbates disease progression in both conditions. Obesity also appears to impair the effectiveness of conventional periodontal treatments. Conclusions: The microbial axis between the oral cavity and the gut represents a central pathway in the complex interactions between obesity and periodontitis. This relationship involves microbial dysbiosis, bacterial translocation and shared inflammatory mechanisms that collectively contribute to disease progression. Clinical relevance: A better understanding of the relationship between obesity and periodontitis supports the development of customized treatment strategies for obese patients with periodontal disease. Future research should focus on developing targeted interventions that address both conditions simultaneously to improve patient outcomes and develop more effective prevention and treatment strategies. Full article

Iron, an essential element for virtually all known organisms, serves not only as a micronutrient but also as an energy source for bacteria. Iron-oxidizing microorganisms mediate Fe(II) oxidation under diverse redox conditions, yielding amorphous iron (hydr)oxides or crystalline iron minerals. This globally significant biogeochemical process drives modern iron cycling across terrestrial and aquatic ecosystems. The resulting biomineralization not only produces secondary minerals but also effectively immobilizes heavy metals, offering a sustainable strategy for environmental remediation. This review systematically examines (1) the biogeochemical mechanisms and mineralogical signatures of Fe(II) oxidation by four distinct iron oxidizers: acidophilic aerobes (e.g., Acidithiobacillus), neutrophilic microaerophiles (e.g., Gallionella), nitrate-reducing anaerobes (e.g., Acidovorax), and anoxygenic phototrophs (e.g., Rhodobacter); (2) research advances in heavy metal immobilization by biogenic iron minerals: adsorption, coprecipitation, and structural incorporation; and (3) the impact of pH, temperature, organic matter, and coexisting ions on Fe(II) oxidation efficiency and iron mineral formation by iron-oxidizing bacteria. By characterizing iron-oxidizing bacterial species and their functional processes under varying pH and redox conditions, this study provides critical insights into microbial behaviors driving the evolution of acid mine drainage (AMD). Full article

Altered precipitation regimes, both in intensity and duration, can profoundly influence the structure and function of soil microbial communities, yet the patterns and drivers of these responses remain unclear across ecosystem types. Here, using data exclusively from 101 field experiments conducted in China (yielding 695 observations), we investigated the impacts of altered precipitation on soil microbial biomass, diversity, and enzymatic activity in forest and grassland ecosystems. Soil microbial biomass carbon (MBC) and nitrogen (MBN) increased in response to precipitation addition, particularly in grasslands, but they decreased under reduced precipitation, with the decline being more pronounced in forests. The magnitude and duration of precipitation manipulation significantly influenced these effects, with moderate and long-term changes producing divergent responses. Bacterial diversity was largely unaffected by all precipitation treatments, whereas fungal diversity decreased significantly under intense and short-term reductions in precipitation. Enzyme activities exhibited the following element-specific patterns: carbon- and phosphorus-cycling enzymes and antioxidant enzymes were suppressed by precipitation reduction, especially in grasslands, while nitrogen-cycling enzymes showed no consistent response. Moreover, microbial responses were significantly shaped by environmental factors, including mean annual temperature (MAT), mean annual precipitation (MAP), and elevation. Our region-specific analysis highlights precipitation-driven microbial dynamics across China’s diverse climatic and ecological conditions. These findings demonstrate that soil microbial communities respond asymmetrically to precipitation changes, with responses shaped by both ecosystem type and climatic context, underscoring the need to account for environmental heterogeneity when predicting belowground feedback to climate change. Full article

Soil microorganisms play an important role in maintaining the functioning of terrestrial ecosystems. Soil microbial communities usually contain both abundant and rare microorganisms. However, in forest ecosystems, the differences in the functions and assembly processes of abundant and rare microbial taxa in soils between planted pure and mixed forests are currently unknown. In this study, four different forest types in the Zhongtiao Mountains were selected, and the diversity and assembly processes of abundant and rare microbial communities in their soils were quantitatively analyzed. The results show that there are differences in the diversity and assembly processes of abundant and rare microorganisms in the four forests. Significant differences in the α-diversity (Shannon index) of abundant bacteria (p = 0.019) and rare fungi (p = 0.049) were obtained in the four forests. The assembly of abundant bacterial and fungal communities in the four forest types was mainly influenced by stochastic processes, the assembly of rare bacterial communities was mainly influenced by deterministic processes, and the assembly of rare fungal communities was influenced by a combination of deterministic and stochastic processes. Planted mixed forests increase the relative contribution of deterministic processes in the assembly of rare fungal communities compared to planted pure forests. This study determined the relative contributions of deterministic and stochastic processes in the assembly of abundant and rare microbial communities among different forest types, providing a theoretical basis for forest management in mixed forests. Full article