Search Results (459)

Silicon has a striking similarity to carbon and is found in plant cells. However, there is no specific role that has been assigned to silicon in the life cycle of plants. The amount of silicon in plant cells is species specific and can reach levels comparable to macronutrients. Silicon is used extensively in artificial intelligence, nanotechnology, and the digital revolution, and thus can serve as an informational molecule such as nucleic acids. The diverse potential of silicon to bond with different chemical species is analogous to carbon; thus, it can serve as a structural candidate similar to proteins. The discovery of large amounts of silicon on Mars and the moon, along with the recent development of enzyme that can incorporate silicon into organic molecules, has propelled the theory of creating silicon-based life. The bacterial cytochrome has been modified through directed evolution such that it could cleave silicon–carbon bonds in organo-silicon compounds. This consolidates the idea of utilizing silicon in biomolecules. In this article, the potential of silicon-based life forms has been hypothesized, along with the reasoning that autotrophic virus-like particles could be used to investigate such potential. Such investigations in the field of synthetic biology and astrobiology will have corollary benefits for Earth in the areas of medicine, sustainable agriculture, and environmental sustainability. Full article

The purpose of this work was to obtain specialized enrichment cultures from an original extreme acidophilic consortium of extremely acidophilic microorganisms and to study their microbial community composition and biotechnological potential. At temperatures of 25, 35, 40 and 50 °C, distinct enrichments of extremely acidophilic microorganisms used in the processes of bioleaching sulfide ores were obtained using nutrient media containing ferrous sulfate, elemental sulfur and a copper sulfide concentrate as nutrient inorganic substrates, with and without the addition of 0.02% yeast extract. The microbial community composition was studied using the sequencing of the V3–V4 hypervariable region of the 16S rRNA genes. The different growth conditions led to changes in the microbial composition and relative abundance of mesophilic and moderately thermophilic, strict autotrophic and mixotrophic microorganisms in members of the genera Acidithiobacillus, Sulfobacillus, Leptospirillum, Acidibacillus, Ferroplasma and Cuniculiplasma. The dynamics of the oxidation of ferrous iron, sulfur, and sulfide minerals (pyrite and chalcopyrite) by the enrichments was also studied in the temperature range of 25 to 50 °C. The study of enrichment cultures using the molecular biological method using the metabarcoding method of variable V3–24 V4 fragments of 16S rRNA genes showed that enrichment cultures obtained under different conditions differed in composition, which can be explained by differences in the physiological properties of the identified microorganisms. Regarding the dynamics of the oxidation of ferrous ions, sulfur, and sulfide minerals (pyrite and chalcopyrite), each enrichment culture was studied at a temperature range of 25 to 50 °C and indicated that all obtained enrichments were capable of oxidizing ferrous iron, sulfur and minerals at different rates. The obtained enrichment cultures may be used in further work to increase bioleaching by using the suitable inoculum for the temperature and process conditions. Full article

Soil respiration (Rt), consisting of heterotrophic (Rh) and autotrophic respiration (Ra), plays a vital role in terrestrial carbon cycling and is sensitive to soil temperature and moisture. In dryland agriculture, plastic film mulching (PM) is widely used to regulate soil hydrothermal conditions, but its effects on Rt components and their temperature sensitivity (Q₁₀) across regions remain unclear. A two-year field study was conducted at two rain-fed maize sites: Anding (warmer, semi-arid) and Yuzhong (colder, drier). PM significantly increased Rt, Rh, and Ra, especially Ra, due to enhanced root biomass and improved microclimate. Yield increased by 33.6–165%. Peak respiration occurred earlier in Anding, aligned with maize growth and soil temperature. PM reduced Q₁₀ of Rt and Ra in Anding, but only Ra in Yuzhong. Rh Q₁₀ remained stable, indicating microbial respiration was less sensitive to temperature changes. Structural equation modeling revealed that Rt and Ra were mainly driven by soil temperature and root biomass, while Rh was more influenced by microbial biomass carbon (MBC) and dissolved organic carbon (DOC). Despite increased CO₂ emissions, PM improved carbon emission efficiency (CEE), particularly in Yuzhong (+67%). The application of PM is recommended to enhance yield while optimizing carbon efficiency in dryland farming systems. Full article

Kleptoplastidy is a nutrition mode in which cells of protists and some multicellular organisms acquire, maintain, and exploit chloroplasts of prey algae cells as photosynthesis reactors. It is an important aspect of the mixotrophic feeding strategy, which plays a role in the formation of harmful algae blooms (HABs). We developed a new mathematical model, in which kleptoplastidy is regarded as a mechanism of enhancing mixotrophy of protists. The model is constructed using three thought (theoretical) experiments and the concept of biological time. We propose to measure the contribution of kleptoplastidy to mixotrophy using a new ecological indicator: the kleptoplastidy index. This index is a function of two dimensionless variables, one representing the ratio of photosynthetic production of acquired chloroplasts versus native chloroplasts, and the other representing the balance between autotrophic and heterotrophic feeding modes. The index is tested by data for the globally distributed, bloom-forming potentially toxic mixotrophic dinoflagellates Prorocentrum cordatum. The model supports our hypothesis that kleptoplastidy can increase the division rate of algae significantly (by 40%), thus boosting their population growth and promoting blooms. The proposed model can contribute to advancements in ecological modeling aimed at forecasting and management of HABs that deteriorate marine coastal environments worldwide. Full article

Groundwater at petroleum-contaminated sites typically exhibits elevated dissolved inorganic carbon (DIC) levels due to hydrocarbon biodegradation; however, our prior field investigations revealed an enigmatic DIC depletion anomaly that starkly contradicts this global pattern and points to an unrecognized carbon sink. In a breakthrough demonstration, this study provides the first experimental confirmation that sulfur-oxidizing bacteria (SOB) drive substantial carbon sequestration via a coupled sulfur oxidation autotrophic assimilation process. Through integrated hydrochemical monitoring and 16S rRNA sequencing in an enrichment culture system, we captured the complete DIC transformation trajectory: heterotrophic acetate degradation initially increased DIC to 370 mg/L, but subsequent autotrophic assimilation by SOB dramatically reduced DIC to 270 mg/L, yielding a net consumption of 85 mg/L. The distinctive pH dynamics (initial alkalization followed by acidification) further corroborated microbial regulation of carbon cycling. Critically, Pseudomonas stutzeri and P. alcaliphila were identified as the dominant carbon-fixing agents. These findings definitively establish that chemolithoautotrophic SOB convert DIC into organic carbon through a “sulfur oxidation-carbon fixation” coupling mechanism, overturning the conventional paradigm of petroleum-contaminated sites as perpetual carbon sources. The study fundamentally redefines natural attenuation frameworks by introducing microbial carbon sink potential as an essential assessment metric for environmental sustainability. Full article

In this paper, the production of biomass, pigments, lipids, and carbohydrates and the elimination of ammonium and orthophosphate by the microalgae Chlorella vulgaris, grown in synthetic wastewater (SWW), were studied under different light intensities (3000–10,000 lux), pH (7.5–9.5) and daily illumination time (8–16 h). The best conditions for the autotrophic culture of microalgae were predicted using response surface methodology (RSM). The results showed that the adaptation of the microalgae for this nutrient source was effective. The best conditions for the cultivation of Chlorella vulgaris in SWW were 8.44 pH and a light intensity of 8433 lux in the daily illumination time of 16 h. Under optimal conditions, the production of microalgal biomass, chlorophyll-a, chlorophyll-b, carotenoids, lipids and carbohydrates was 0.534 g/L, 7.46 mg/mL, 3.53 mg/mL, 2.01 mg/mL, 21.40% and 28.46%, respectively. The removal efficiencies of ammonium and orthophosphate from SWW were 97.66% and 58.78% in autotrophic cultures. This investigation introduces a new aspect by verifying the optimized cultivation conditions with real municipal wastewater, indicating that the procedure could be utilized for sustainable production of bioproducts and efficient treatment of municipal wastewater. Full article

Studies have been conducted on the potential development of Hydrogenobacter thermophilus and Pseudomonas aeruginosa in an anaerobic environment, both in the presence and absence of molecular hydrogen (H₂). H. thermophilus developed better at 70 °C and pH 7.0 in the presence of molecular hydrogen. It also multiplied in its absence, but to a lesser extent. Dissolved hydrogen in an amount of 1 ppm is biologically active for this thermophilic chemolithotrophic species. The tested strains of P. aeruginosa also showed growth under anaerobic conditions in the presence of H₂ concentrations of 1 ppm and 2 ppm, which was ensured by adding Mg. The results indicate that not only the oldest microorganisms on our planet, archaebacteria, but also current species such as H. thermophilus and P. aeruginosa are capable of development under conditions characteristic of the ancient hydrosphere. DFT analyses showed that hydrogen water forms stable water clusters, whose hydrogen bond network retains and stabilizes reducing agents such as molecular hydrogen and magnesium (Mg⁰). This creates a microenvironment in which key redox processes associated with autotrophic growth and chemical evolution can occur. This is a realistic model of the Earth’s primordial hydrosphere’s conditions. Full article

Biomass-derived growth stimulants are widely recognized as green and economical solutions that can significantly enhance microalgae culture efficiency and optimize the biomanufacturing process of target products. In this paper, we investigated the effect of ethanol synergized with guaiacol (GA) on biomass and β-1,3 glucan accumulation in edible microalgae, namely Euglena gracilis. The ethanol-induced mixotrophic mode significantly increased biomass and paramylon production by 12.68 and 6.43 times, respectively, compared to the autotrophic control group. GA further exerted toxic excitatory effects (hormesis) on top of ethanol mixotrophic nutrition. At the optimal concentration of 10 mg·L⁻¹ GA, chlorophyll a, carotenoids, and paramylon production increased by 8.96%, 11.75%, and 16.67%, respectively, compared to the ethanol-treated group. However, at higher concentrations, the biomass and paramylon yield decreased significantly. This study not only establishes an effective combinatorial strategy for enhancing paramylon biosynthesis but also provides novel insights into the hormesis mechanism of phenolic compounds in microalgae cultivation. The developed approach demonstrates promising potential for sustainable production of high-value algal metabolites while reducing cultivation costs, which could significantly advance the commercialization of microalgae-based biorefineries in food and pharmaceutical industries. Full article

Gut microbes are important for saproxylophagous insects, but little is known about the specific types of microbes that we can grow in the lab and how their diet affects them. We characterized aerobic culturable microbes from the superworm Zophobas atratus larvae reared on a standard diet (SD) and a fungal-based diet (FD) using the selective plating and 16S rRNA sequencing of isolates. Five functional groups were cultured: amino acid autotrophs, enterobacteria, yeasts, cellulolytic bacteria, and molds. A quantitative assessment revealed distinct diet-dependent patterns: SD-fed larvae showed the dominance of enterobacteria and amino acid autotrophs, while FD-fed larvae exhibited a higher abundance of enterobacteria and yeasts. Mold populations remained minimal under both diets. A phylogenetic analysis of bacterial isolates showed four core bacterial phyla (Pseudomonadota, Actinobacteria, Bacillota, and Bacteroidota) with diet-sensitive genus-level variations. Pseudomonadota dominated both diets, but certain genera were associated with different diets: Micrococcus and Brucella in the SD versus Citrobacter and Pseudomonas in the FD. Shared genera (Klebsiella, Enterobacter, and Bacillus) may represent a core culturable community. These findings demonstrate the influence of diet on culturable gut microbes while highlighting the need for complementary molecular approaches to study unculturable taxa. The isolated strains provide resources for investigating microbial functions in insect nutrition. Full article

The structure of microbial communities in sponge-sand filters, used for the treatment of real domestic sewage with elevated ammonium nitrogen concentrations (approximately 155 mg·dm⁻³), was characterized using 16S rRNA gene sequencing. Analyses using the Illumina technique allowed us to perform a comparison of filters by layer (two or three layers) and type of fill (waste PUR foams with 95% open porosity, sand). Proteobacteria, actinobacteria, and firmicutes were shown to be the most abundant phyla. The number and type of fill layers had a significant impact on the diversity of nitrifying bacteria. The presence of Nitrosomonas and Nitrospira was observed in every sponge fill sample, but the abundance of autotrophic nitrifiers was negligible in the two-layer filter. The conditions there proved more favorable for the growth of aerobic heterotrophic bacteria. Also in the Schmutzdecke layer, a dominance of heterotrophic nitrifiers was found. The abundance of bacteria with nitrifying activity (AOB, comammox, HNAD) in the biomass of spongy fill placed in casings was 1.7 times lower than in foams without casings. In addition, anammox bacteria (unidentified Planctomycetes), found mainly in the sponge fill and Schmutzdecke of the three-layer filters, may have been responsible for NH4⁺-N removal exceeding 70%. In the case of the two-layer filter, the removal of this pollutant reached 92%. Burkholderia and Sphingopyxis were identified as the predominant denitrifying bacteria. The foam-filled filter in the casings showed an increase in o_Caldilineaceae, involved in nitrate removal as non-denitrifiers. Actinomycetes Pseudonocardia and Amycolatopsis, as well as Proteobacteria Devosia, Acinetobacter, and Bdellovibrio, were found to be involved in phosphorus removal in the waste PUR foams. Full article

Global population growth makes an increase in food production inevitable, and protein plays a vital role as an essential nutrient. However, as the proportion of land used for agriculture and animal protein production decreases, the search for sustainable, low-cost alternatives to proteins has become a research priority. Microalgae can synthesize a wide range of proteins, among which phycocyanin is of interest due to its unique biological activity. It has a complete amino acid profile, contains essential amino acids, and is a high-quality source of protein. Most of the existing studies have focused on single influencing factors, improved methods, or specific culture conditions for the synthesis of phycocyanin in microalgae and have not yet analyzed the culture conditions, influencing factors, and improved strategies for the synthesis of phycocyanin in microalgae in a systematic and integrated manner, and the studies lacked comprehensiveness and consistency. In this paper, the key factors, mechanisms of action, and improvement strategies affecting the accumulation of phycocyanin in microalgae are reviewed. The growth of microalgae under autotrophic, heterotrophic, and mixed culture conditions and their effects on phycocyanin synthesis were systematically described. The aim is to accelerate the application of phycocyanin in the food industry and alternative proteins by improving the production efficiency of microalgae, promoting their comprehensive utilization, and injecting a new impetus into the development of a sustainable protein industry. Full article

Pyrite-based autotrophic denitrification is an effective method for nitrate removal. However, pyrite does not exist alone and is inevitably accompanied by the presence of organic matter in nature, and thus the influence of organic co-substrates on pyrite-based denitrification should be taken into consideration. Even in a circumstance where no addition of an exogenous organic carbon source is implemented, the introduction of pyrite into groundwater and sediment is capable of stimulating both autotrophic and heterotrophic denitrifying bacteria. In this study, the impact of the initial addition of organic co-substrates on the performance and dynamics of bacterial communities in pyrite-based denitrification processes was evaluated under low-concentration conditions. The findings suggest that the initial addition of organic co-substrates at low concentrations (6–48 mg L⁻¹) could enhance the efficiency of pyrite-based autotrophic denitrification. In contrast, the competitive effects of organic co-substrates became positive with increasing additions of initial organic co-substrates. When an organic co-substrate was added at an initial concentration of 96 mg L⁻¹, the competition between heterotrophic denitrification and pyrite-based autotrophic denitrification was found to be more pronounced than their promotion role as the majority of nitrate was consumed by heterotrophic denitrification. Thiobacillus was the most dominant bacterium in the denitrification system, where pyrite served as the sole electron donor. At the same time, the addition of organic co-substrate under low initial concentration, led to a different microorganism composition. Full article

Synthetic biology (SynBio) is an emerging interdisciplinary field that applies engineering principles to the design and construction of novel biological systems or the redesign of existing natural systems for new functions. As autotrophs with complex cellular architectures, plants possess inherent capabilities to serve as “living factories” for SynBio applications. Recent advancements in genetic engineering, genome editing, and transformation techniques are improving the precision and programmability of plant systems. Innovations, such as CRISPR systems, prime editing strategies, and in planta and nanoparticle-mediated delivery, are expanding the SynBio toolkit for plants. However, the efficient delivery of genetic constructs remains a barrier due to plant systems’ complexity. To address these limitations, SynBio is increasingly integrating iterative Design–Build–Test–Learn (DBTL) cycles, standardization, modular DNA assembly systems, and plant-optimized toolkits to enable predictable trait engineering. This review explores the technological foundations of plant SynBio, including genome editing and transformation methods, and examines their integration into engineered systems. Applications, such as biofuel production, pharmaceutical biosynthesis, and agricultural innovation, are highlighted, along with their ethical, technical, and regulatory challenges. Ultimately, SynBio could offer a transformative path toward sustainable solutions, provided it continues to align technological advances with public interest and global sustainability goals. Full article

Seamounts are distributed globally across the oceans and are generally considered oases of biomass abundance as well as hotspots of species richness. Diverse microbial communities are essential for biogeochemical cycling, yet their functional partitioning among seamounts with geographic features remains poorly investigated. Through metagenomic sequencing and genome-resolved analysis, we revealed that Proteobacteria (33.18–40.35%) dominated the bacterial communities, while Thaumarchaeota (5.98–10.86%) were the predominant archaea. Metagenome-assembled genomes uncovered 117 medium-quality genomes, 81.91% of which lacked species-level annotation, highlighting uncultured diversity. In the Nazuna seamount, which is located in the Marcus-Wake seamount region, microbiomes exhibited heightened autotrophic potential via the 3-hydroxypropionate cycle and dissimilatory nitrate reduction, whereas in the Magellan seamounts regions, nitrification and organic nitrogen metabolism were prioritized. Sulfur oxidation genes dominated Nazuna seamount microbes, with 33 MAGs coupling denitrification to sulfur redox pathways. Metal resistance genes for tellurium, mercury, and copper were prevalent, alongside habitat-specific iron transport systems. Cross-feeding interactions mediated by manganese, reduced ferredoxin, and sulfur–metal integration suggested adaptive detoxification strategies. This study elucidates how deep-sea microbes partition metabolic roles and evolve metal resilience mechanisms across geographical niches. It also supports the view that microbial community structure and metabolic function across seamount regions are likely influenced by the geomorphological features of the seamounts. Full article

This study presents a cost-effective and feasible technique for the deep denitrification of wastewater, based on sulfur autotrophic denitrification mediated by polysulfides (${\mathrm{S}}_{\mathrm{n}}^{2-}$). Various polysulfides were used as electron donors in an aerobic/anoxic sequencing batch reactor (SBR) to simulate nitrification and denitrification processes. The performance of different polysulfide species and their respective dosages were evaluated to determine the optimal conditions for nitrogen removal. Under optimal nitrogen removal conditions with a dosing of 19.2 mg S/L from Na₂S₃, the system was operated continuously for 38 days, with low sludge production during the process. During stable operation, the system achieved an average removal of 7.3 mg/L of $\mathrm{N}{\mathrm{O}}_3^{-}\text{-}\mathrm{N}$, corresponding to a removal efficiency of 23.1%. No significant accumulation of $\mathrm{N}{\mathrm{O}}_2^{-}\text{-}\mathrm{N}$ was observed in the effluent, and the average utilization efficiency of Na₂S₃ reached 83.7%. Continuous dosing of Na₂S₃ promoted the enrichment of sulfur autotrophic denitrification-related microorganisms within the system. Full article